RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 SLAIN1Q8ND83 568 aa8.45□□□□□ -1.06
VPS41-212ENST00000482217 MICALL2Q8IY33 904 aa8.44□□□□□ -1.06
VPS41-212ENST00000482217 TSHZ2Q9NRE2 1034 aa8.42□□□□□ -1.06
VPS41-212ENST00000482217 SNPHO15079 494 aa8.39□□□□□ -1.07
VPS41-212ENST00000482217 KDM2AQ9Y2K7 1162 aa8.39□□□□□ -1.07
VPS41-212ENST00000482217 PPP1R37O75864 691 aa8.33□□□□□ -1.08
VPS41-212ENST00000482217 TMEM92Q6UXU6 159 aa8.3□□□□□ -1.08
VPS41-212ENST00000482217 FAM163AQ96GL9 167 aaPredicted RBP8.29□□□□□ -1.08
VPS41-212ENST00000482217 BCANQ96GW7 911 aa8.29□□□□□ -1.08
VPS41-212ENST00000482217 DOK7Q18PE1 504 aa8.28□□□□□ -1.08
VPS41-212ENST00000482217 TMC2Q8TDI7 906 aa8.28□□□□□ -1.08
VPS41-212ENST00000482217 KIF3CO14782 793 aa8.27□□□□□ -1.09
VPS41-212ENST00000482217 RIMBP2O15034 1052 aa8.26□□□□□ -1.09
VPS41-212ENST00000482217 POTEMA6NI47 508 aa8.25□□□□□ -1.09
VPS41-212ENST00000482217 ST18O60284 1047 aa8.25□□□□□ -1.09
VPS41-212ENST00000482217 C2orf72A6NCS6 295 aa8.24□□□□□ -1.09
VPS41-212ENST00000482217 HOXB3P14651 431 aaPredicted RBP8.24□□□□□ -1.09
VPS41-212ENST00000482217 LCE2DQ5TA82 110 aaPredicted RBP8.24□□□□□ -1.09
VPS41-212ENST00000482217 ZSWIM6Q9HCJ5 1215 aa8.24□□□□□ -1.09
VPS41-212ENST00000482217 ZNF710Q8N1W2 664 aa8.23□□□□□ -1.09
VPS41-212ENST00000482217 GPHNQ9NQX3 736 aaPredicted RBP8.23□□□□□ -1.09
VPS41-212ENST00000482217 FOXK1P85037 733 aa8.2□□□□□ -1.1
VPS41-212ENST00000482217 POTEGQ6S5H5 508 aa8.2□□□□□ -1.1
VPS41-212ENST00000482217 CRISPLD2Q9H0B8 497 aa8.2□□□□□ -1.1
VPS41-212ENST00000482217 SLC34A2O95436 690 aa8.19□□□□□ -1.1
VPS41-212ENST00000482217 PDE4AP27815 886 aa8.19□□□□□ -1.1
VPS41-212ENST00000482217 CADPS2Q86UW7 1296 aa8.19□□□□□ -1.1
VPS41-212ENST00000482217 HOXB1P14653 301 aaPredicted RBP8.18□□□□□ -1.1
VPS41-212ENST00000482217 WDR70Q9NW82 654 aa8.17□□□□□ -1.1
VPS41-212ENST00000482217 PCDH10Q9P2E7 1040 aa8.17□□□□□ -1.1
VPS41-212ENST00000482217 P3H3Q8IVL6 736 aa8.16□□□□□ -1.1
VPS41-212ENST00000482217 NCKAP5LQ9HCH0 1330 aa8.15□□□□□ -1.1
VPS41-212ENST00000482217 EMP3P54852 163 aa8.15□□□□□ -1.1
VPS41-212ENST00000482217 DSG2Q14126 1118 aa8.15□□□□□ -1.1
VPS41-212ENST00000482217 PLPP6Q8IY26 295 aa8.15□□□□□ -1.1
VPS41-212ENST00000482217 NBR1Q14596 966 aa8.14□□□□□ -1.11
VPS41-212ENST00000482217 GPR153Q6NV75 609 aa8.14□□□□□ -1.11
VPS41-212ENST00000482217 PPP1R15BQ5SWA1 713 aa8.13□□□□□ -1.11
VPS41-212ENST00000482217 DDX27Q96GQ7 796 aaKnown RBP8.13□□□□□ -1.11
VPS41-212ENST00000482217 MFSD10Q14728 455 aa8.12□□□□□ -1.11
VPS41-212ENST00000482217 PTCD2Q8WV60 388 aaKnown RBP8.12□□□□□ -1.11
VPS41-212ENST00000482217 MARVELD3Q96A59 401 aa8.12□□□□□ -1.11
VPS41-212ENST00000482217 LARP6Q9BRS8 491 aaKnown RBP8.11□□□□□ -1.11
VPS41-212ENST00000482217 TBC1D12O60347 775 aa8.1□□□□□ -1.11
VPS41-212ENST00000482217 ARSIQ5FYB1 569 aa8.09□□□□□ -1.11
VPS41-212ENST00000482217 PCDHGA4Q9Y5G9 962 aa8.09□□□□□ -1.11
VPS41-212ENST00000482217 FAM205CA6NFA0 338 aa8.07□□□□□ -1.12
VPS41-212ENST00000482217 ERBB3P21860 1342 aa8.06□□□□□ -1.12
VPS41-212ENST00000482217 KCNV2Q8TDN2 545 aa8.06□□□□□ -1.12
VPS41-212ENST00000482217 OXER1Q8TDS5 423 aa8.06□□□□□ -1.12
VPS41-212ENST00000482217 HS3ST6Q96QI5 342 aa8.06□□□□□ -1.12
VPS41-212ENST00000482217 E2F4Q16254 413 aa8.05□□□□□ -1.12
VPS41-212ENST00000482217 CDAN1Q8IWY9 1227 aa8.05□□□□□ -1.12
VPS41-212ENST00000482217 PSDA5PKW4 1024 aaPredicted RBP8.04□□□□□ -1.12
VPS41-212ENST00000482217 ZNF316A6NFI3 1004 aaPredicted RBP8.04□□□□□ -1.12
VPS41-212ENST00000482217 NUDT7P0C024 238 aa8.04□□□□□ -1.12
VPS41-212ENST00000482217 ARHGEF1Q92888 912 aaKnown RBP8.03□□□□□ -1.12
VPS41-212ENST00000482217 CAMK2BQ13554 666 aa8.02□□□□□ -1.13
VPS41-212ENST00000482217 VARS2Q5ST30 1063 aaKnown RBP8.02□□□□□ -1.13
VPS41-212ENST00000482217 KHSRPQ92945 711 aaKnown RBP eCLIP8.02□□□□□ -1.13
VPS41-212ENST00000482217 KDM4FA0A1W2PPD8 638 aa8.01□□□□□ -1.13
VPS41-212ENST00000482217 UPF1Q92900 1129 aaKnown RBP eCLIP8□□□□□ -1.13
VPS41-212ENST00000482217 DAXXQ9UER7 740 aaPredicted RBP8□□□□□ -1.13
VPS41-212ENST00000482217 POTEB3A0JP26 581 aa7.99□□□□□ -1.13
VPS41-212ENST00000482217 POTEBQ6S5H4 581 aa7.99□□□□□ -1.13
VPS41-212ENST00000482217 ZNF687Q8N1G0 1237 aa7.99□□□□□ -1.13
VPS41-212ENST00000482217 ARIH1Q9Y4X5 557 aaPredicted RBP7.99□□□□□ -1.13
VPS41-212ENST00000482217 MAP3K9P80192 1104 aa7.98□□□□□ -1.13
VPS41-212ENST00000482217 EMILIN3Q9NT22 766 aa7.98□□□□□ -1.13
VPS41-212ENST00000482217 LHX6Q9UPM6 363 aa7.98□□□□□ -1.13
VPS41-212ENST00000482217 TPRNQ4KMQ1 711 aa7.96□□□□□ -1.14
VPS41-212ENST00000482217 ANO8Q9HCE9 1232 aaPredicted RBP7.96□□□□□ -1.14
VPS41-212ENST00000482217 EVI5O60447 810 aa7.95□□□□□ -1.14
VPS41-212ENST00000482217 PBX2P40425 430 aa7.95□□□□□ -1.14
VPS41-212ENST00000482217 PPP4R3BQ5MIZ7 849 aa7.94□□□□□ -1.14
VPS41-212ENST00000482217 TULP1O00294 542 aaPredicted RBP7.93□□□□□ -1.14
VPS41-212ENST00000482217 KRTAP3-3Q9BYR6 98 aa7.93□□□□□ -1.14
VPS41-212ENST00000482217 KRTAP3-2Q9BYR7 98 aa7.93□□□□□ -1.14
VPS41-212ENST00000482217 PRKCSHP14314 528 aaPredicted RBP7.92□□□□□ -1.14
VPS41-212ENST00000482217 JPH4Q96JJ6 628 aa7.92□□□□□ -1.14
VPS41-212ENST00000482217 DPYSL4O14531 572 aa7.91□□□□□ -1.14
VPS41-212ENST00000482217 SPDYE16A6NNV3 312 aaPredicted RBP7.9□□□□□ -1.14
VPS41-212ENST00000482217 FOSBP53539 338 aa7.9□□□□□ -1.14
VPS41-212ENST00000482217 TESPA1A2RU30 521 aaPredicted RBP7.89□□□□□ -1.15
VPS41-212ENST00000482217 PDIA6Q15084 440 aa7.89□□□□□ -1.15
VPS41-212ENST00000482217 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.89□□□□□ -1.15
VPS41-212ENST00000482217 ZNF454Q8N9F8 522 aa7.89□□□□□ -1.15
VPS41-212ENST00000482217 KCNH8Q96L42 1107 aa7.89□□□□□ -1.15
VPS41-212ENST00000482217 ARHGAP33O14559 1287 aa7.88□□□□□ -1.15
VPS41-212ENST00000482217 SEMA3EO15041 775 aa7.88□□□□□ -1.15
VPS41-212ENST00000482217 SMYD5Q6GMV2 418 aa7.88□□□□□ -1.15
VPS41-212ENST00000482217 PTGER2P43116 358 aa7.87□□□□□ -1.15
VPS41-212ENST00000482217 FBXW7Q969H0 707 aa7.87□□□□□ -1.15
VPS41-212ENST00000482217 BCL2L12Q9HB09 334 aa7.87□□□□□ -1.15
VPS41-212ENST00000482217 PHF14O94880 888 aa7.86□□□□□ -1.15
VPS41-212ENST00000482217 LMOD2Q6P5Q4 547 aa7.86□□□□□ -1.15
VPS41-212ENST00000482217 ZDHHC16Q969W1 377 aa7.86□□□□□ -1.15
VPS41-212ENST00000482217 LSM11P83369 360 aaKnown RBP eCLIP7.85□□□□□ -1.15
VPS41-212ENST00000482217 EPAS1Q99814 870 aa7.85□□□□□ -1.15
VPS41-212ENST00000482217 TYW1BQ6NUM6 668 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 244.3 ms