RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 AEBP2Q6ZN18 517 aaPredicted RBP18.06■□□□□ 0.48
VPS41-212ENST00000482217 CHIC1Q5VXU3 224 aa17.55■□□□□ 0.4
VPS41-212ENST00000482217 SENP3Q9H4L4 574 aaPredicted RBP15.47■□□□□ 0.07
VPS41-212ENST00000482217 PHF23Q9BUL5 403 aaPredicted RBP15.35■□□□□ 0.05
VPS41-212ENST00000482217 FOXD1Q16676 465 aa14.29□□□□□ -0.12
VPS41-212ENST00000482217 PLPPR3Q6T4P5 718 aa14.21□□□□□ -0.13
VPS41-212ENST00000482217 PPP6R1Q9UPN7 881 aa13.58□□□□□ -0.24
VPS41-212ENST00000482217 ADRA2BP18089 450 aa13.56□□□□□ -0.24
VPS41-212ENST00000482217 PIAS4Q8N2W9 510 aaPredicted RBP13.47□□□□□ -0.25
VPS41-212ENST00000482217 MSH5O43196 834 aa13.34□□□□□ -0.27
VPS41-212ENST00000482217 POTEDQ86YR6 584 aa13.07□□□□□ -0.32
VPS41-212ENST00000482217 SCAF1Q9H7N4 1312 aaKnown RBP12.56□□□□□ -0.4
VPS41-212ENST00000482217 PPP4R3CPQ6ZMV5 832 aa12.45□□□□□ -0.42
VPS41-212ENST00000482217 MAPK8IP2Q13387 824 aaPredicted RBP12.33□□□□□ -0.44
VPS41-212ENST00000482217 DMRT2Q9Y5R5 561 aa12.29□□□□□ -0.44
VPS41-212ENST00000482217 CNKSR2Q8WXI2 1034 aa12.19□□□□□ -0.46
VPS41-212ENST00000482217 NCBP3Q53F19 620 aaKnown RBP12.15□□□□□ -0.46
VPS41-212ENST00000482217 RNF216Q9NWF9 866 aaPredicted RBP12□□□□□ -0.49
VPS41-212ENST00000482217 HOXD11P31277 338 aaPredicted RBP11.99□□□□□ -0.49
VPS41-212ENST00000482217 KCNA4P22459 653 aa11.93□□□□□ -0.5
VPS41-212ENST00000482217 NPM3O75607 178 aaKnown RBP11.88□□□□□ -0.51
VPS41-212ENST00000482217 DCAF8L1A6NGE4 600 aa11.72□□□□□ -0.53
VPS41-212ENST00000482217 DNAJC5BQ9UF47 199 aa11.69□□□□□ -0.54
VPS41-212ENST00000482217 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.4□□□□□ -0.586e-7■■□□□ 12.6
VPS41-212ENST00000482217 SLC4A1APQ9BWU0 796 aaKnown RBP11.37□□□□□ -0.59
VPS41-212ENST00000482217 RNF39Q9H2S5 420 aa11.37□□□□□ -0.59
VPS41-212ENST00000482217 C1QBPQ07021 282 aaKnown RBP11.27□□□□□ -0.61
VPS41-212ENST00000482217 SLC4A2P04920 1241 aa11.25□□□□□ -0.61
VPS41-212ENST00000482217 CACNB1Q02641 598 aaPredicted RBP11.19□□□□□ -0.62
VPS41-212ENST00000482217 U3KPZ7 1027 aaPredicted RBP11.17□□□□□ -0.62
VPS41-212ENST00000482217 EHMT2Q96KQ7 1210 aa11.15□□□□□ -0.62
VPS41-212ENST00000482217 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.09□□□□□ -0.63
VPS41-212ENST00000482217 HNRNPUL2Q1KMD3 747 aaKnown RBP11.09□□□□□ -0.63
VPS41-212ENST00000482217 FOXD4L1Q9NU39 408 aa11.09□□□□□ -0.63
VPS41-212ENST00000482217 MYCNP04198 464 aaPredicted RBP11.05□□□□□ -0.64
VPS41-212ENST00000482217 APLP2Q06481 763 aa11.03□□□□□ -0.64
VPS41-212ENST00000482217 SAMD1Q6SPF0 538 aaPredicted RBP11.01□□□□□ -0.65
VPS41-212ENST00000482217 ZBTB22O15209 634 aa10.95□□□□□ -0.66
VPS41-212ENST00000482217 CSRNP3Q8WYN3 585 aa10.95□□□□□ -0.66
VPS41-212ENST00000482217 CAPN15O75808 1086 aa10.88□□□□□ -0.67
VPS41-212ENST00000482217 SPINK5Q9NQ38 1064 aaPredicted RBP10.87□□□□□ -0.67
VPS41-212ENST00000482217 ZNF219Q9P2Y4 722 aaPredicted RBP10.85□□□□□ -0.67
VPS41-212ENST00000482217 ATXN8OSP0DMR3 200 aa10.78□□□□□ -0.68
VPS41-212ENST00000482217 TRHP20396 242 aaPredicted RBP10.77□□□□□ -0.69
VPS41-212ENST00000482217 DSG3P32926 999 aa10.74□□□□□ -0.69
VPS41-212ENST00000482217 ATF5Q9Y2D1 282 aaPredicted RBP10.65□□□□□ -0.7
VPS41-212ENST00000482217 ABCB7O75027 752 aa10.61□□□□□ -0.71
VPS41-212ENST00000482217 POLA2Q14181 598 aa10.57□□□□□ -0.72
VPS41-212ENST00000482217 ZBTB12Q9Y330 459 aaPredicted RBP10.5□□□□□ -0.73
VPS41-212ENST00000482217 FBLN2P98095 1184 aa10.34□□□□□ -0.75
VPS41-212ENST00000482217 RBM42Q9BTD8 480 aaKnown RBP10.33□□□□□ -0.76
VPS41-212ENST00000482217 MKRN4PQ13434 485 aaPredicted RBP10.2□□□□□ -0.78
VPS41-212ENST00000482217 OSCARQ8IYS5 282 aa10.2□□□□□ -0.78
VPS41-212ENST00000482217 POTEHQ6S545 545 aa10.17□□□□□ -0.78
VPS41-212ENST00000482217 SPDYE2BA6NHP3 402 aa10.16□□□□□ -0.78
VPS41-212ENST00000482217 SPDYE6P0CI01 402 aa10.16□□□□□ -0.78
VPS41-212ENST00000482217 SPDYE2Q495Y8 402 aa10.16□□□□□ -0.78
VPS41-212ENST00000482217 AKT1S1Q96B36 256 aa10.13□□□□□ -0.79
VPS41-212ENST00000482217 ZNF692Q9BU19 519 aaPredicted RBP10.04□□□□□ -0.8
VPS41-212ENST00000482217 SSUH2Q9Y2M2 353 aa10.03□□□□□ -0.8
VPS41-212ENST00000482217 REM2Q8IYK8 340 aaPredicted RBP9.99□□□□□ -0.81
VPS41-212ENST00000482217 SPDYE4A6NLX3 237 aa9.94□□□□□ -0.82
VPS41-212ENST00000482217 CHRDL2Q6WN34 429 aa9.91□□□□□ -0.82
VPS41-212ENST00000482217 PABPN1Q86U42 306 aaKnown RBP eCLIP9.89□□□□□ -0.83
VPS41-212ENST00000482217 SPDYE1Q8NFV5 336 aaPredicted RBP9.89□□□□□ -0.83
VPS41-212ENST00000482217 FKBP8Q14318 412 aa9.88□□□□□ -0.83
VPS41-212ENST00000482217 PITPNM1O00562 1244 aa9.86□□□□□ -0.83
VPS41-212ENST00000482217 CLEC11AQ9Y240 323 aa9.79□□□□□ -0.84
VPS41-212ENST00000482217 PROM2Q8N271 834 aa9.78□□□□□ -0.84
VPS41-212ENST00000482217 STAG3Q9UJ98 1225 aa9.78□□□□□ -0.84
VPS41-212ENST00000482217 FXR2P51116 673 aaKnown RBP eCLIP9.74□□□□□ -0.85
VPS41-212ENST00000482217 PRR29P0C7W0 189 aa9.72□□□□□ -0.85
VPS41-212ENST00000482217 PIP4P2Q8N4L2 257 aa9.72□□□□□ -0.85
VPS41-212ENST00000482217 PRKAR2AP13861 404 aaKnown RBP9.62□□□□□ -0.87
VPS41-212ENST00000482217 FBXO3Q9UK99 471 aa9.56□□□□□ -0.88
VPS41-212ENST00000482217 CHADLQ6NUI6 762 aa9.53□□□□□ -0.88
VPS41-212ENST00000482217 CREBZFQ9NS37 354 aa9.52□□□□□ -0.89
VPS41-212ENST00000482217 PLEKHG5O94827 1062 aa9.49□□□□□ -0.89
VPS41-212ENST00000482217 FARP1Q9Y4F1 1045 aaPredicted RBP9.49□□□□□ -0.89
VPS41-212ENST00000482217 AMER1Q5JTC6 1135 aaPredicted RBP9.48□□□□□ -0.89
VPS41-212ENST00000482217 HAX1O00165 279 aa9.46□□□□□ -0.9
VPS41-212ENST00000482217 MIER1Q8N108 512 aa9.44□□□□□ -0.9
VPS41-212ENST00000482217 NPM1P06748 294 aaKnown RBP eCLIP9.43□□□□□ -0.9
VPS41-212ENST00000482217 PLCD3Q8N3E9 789 aa9.42□□□□□ -0.9
VPS41-212ENST00000482217 C19orf67A6NJJ6 358 aa9.41□□□□□ -0.9
VPS41-212ENST00000482217 MNX1P50219 401 aaPredicted RBP9.41□□□□□ -0.9
VPS41-212ENST00000482217 ZBTB47Q9UFB7 747 aaPredicted RBP9.41□□□□□ -0.9
VPS41-212ENST00000482217 RTN4Q9NQC3 1192 aaKnown RBP9.38□□□□□ -0.91
VPS41-212ENST00000482217 VASPP50552 380 aaPredicted RBP9.37□□□□□ -0.91
VPS41-212ENST00000482217 CD44P16070 742 aaKnown RBP9.34□□□□□ -0.91
VPS41-212ENST00000482217 SP7Q8TDD2 431 aaPredicted RBP9.34□□□□□ -0.91
VPS41-212ENST00000482217 PAK3O75914 559 aaPredicted RBP9.32□□□□□ -0.92
VPS41-212ENST00000482217 CLCN6P51797 869 aa9.29□□□□□ -0.92
VPS41-212ENST00000482217 EVX2Q03828 476 aa9.29□□□□□ -0.92
VPS41-212ENST00000482217 ZRANB1Q9UGI0 708 aa9.25□□□□□ -0.93
VPS41-212ENST00000482217 KLHL34Q8N239 644 aa9.24□□□□□ -0.93
VPS41-212ENST00000482217 ZNF579Q8NAF0 562 aaKnown RBP9.24□□□□□ -0.93
VPS41-212ENST00000482217 IFNLR1Q8IU57 520 aaPredicted RBP9.23□□□□□ -0.93
VPS41-212ENST00000482217 NUBP1P53384 320 aa9.21□□□□□ -0.94
VPS41-212ENST00000482217 RASEFQ8IZ41 740 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 112.7 ms