RNA–Protein interactions for RNA: ENST00000480961.1

CTSA-206, Transcript of cathepsin A, humanhuman

TSL 2

Gene CTSA, Length 513 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-206ENST00000480961 ZNF777Q9ULD5 760 aaPredicted RBP31.88■■■□□ 2.69
CTSA-206ENST00000480961 GPATCH8Q9UKJ3 1502 aaKnown RBP31.88■■■□□ 2.69
CTSA-206ENST00000480961 MYO5CQ9NQX4 1742 aa31.87■■■□□ 2.69
CTSA-206ENST00000480961 NCOA2Q15596 1464 aa31.84■■■□□ 2.69
CTSA-206ENST00000480961 CFDP1Q9UEE9 299 aaPredicted RBP31.84■■■□□ 2.69
CTSA-206ENST00000480961 SCAPERQ9BY12 1400 aa31.83■■■□□ 2.69
CTSA-206ENST00000480961 ADGRL1O94910 1474 aa31.82■■■□□ 2.68
CTSA-206ENST00000480961 DENND4BO75064 1496 aaPredicted RBP31.8■■■□□ 2.68
CTSA-206ENST00000480961 CFAP74Q9C0B2 1584 aa31.79■■■□□ 2.68
CTSA-206ENST00000480961 PREX2Q70Z35 1606 aa31.78■■■□□ 2.68
CTSA-206ENST00000480961 CDC42BPBQ9Y5S2 1711 aa31.78■■■□□ 2.68
CTSA-206ENST00000480961 CDC42BPAQ5VT25 1732 aa31.77■■■□□ 2.68
CTSA-206ENST00000480961 ZNF644Q9H582 1327 aaPredicted RBP31.75■■■□□ 2.67
CTSA-206ENST00000480961 SUPT6HQ7KZ85 1726 aaKnown RBP31.75■■■□□ 2.67
CTSA-206ENST00000480961 PPARGC1BQ86YN6 1023 aaKnown RBP31.75■■■□□ 2.67
CTSA-206ENST00000480961 AFAP1Q8N556 730 aa31.72■■■□□ 2.67
CTSA-206ENST00000480961 HNRNPMP52272 730 aaKnown RBP eCLIP31.71■■■□□ 2.67
CTSA-206ENST00000480961 FRMPD1Q5SYB0 1578 aa31.69■■■□□ 2.66
CTSA-206ENST00000480961 ARHGEF12Q9NZN5 1544 aa31.69■■■□□ 2.66
CTSA-206ENST00000480961 POGZQ7Z3K3 1410 aa31.68■■■□□ 2.66
CTSA-206ENST00000480961 TRAPPC8Q9Y2L5 1435 aa31.66■■■□□ 2.66
CTSA-206ENST00000480961 SAMD9LQ8IVG5 1584 aa31.65■■■□□ 2.66
CTSA-206ENST00000480961 ABCC1P33527 1531 aa31.64■■■□□ 2.66
CTSA-206ENST00000480961 RICTORQ6R327 1708 aa31.61■■■□□ 2.65
CTSA-206ENST00000480961 MYT1LQ9UL68 1186 aa31.61■■■□□ 2.65
CTSA-206ENST00000480961 MYOM3Q5VTT5 1437 aa31.59■■■□□ 2.65
CTSA-206ENST00000480961 SYCP2Q9BX26 1530 aa31.59■■■□□ 2.65
CTSA-206ENST00000480961 ITSN2Q9NZM3 1697 aa31.58■■■□□ 2.65
CTSA-206ENST00000480961 ZNF518AQ6AHZ1 1483 aa31.58■■■□□ 2.65
CTSA-206ENST00000480961 KIAA1107Q9UPP5 1409 aa31.57■■■□□ 2.64
CTSA-206ENST00000480961 PLEKHH2Q8IVE3 1493 aa31.56■■■□□ 2.64
CTSA-206ENST00000480961 YEATS2Q9ULM3 1422 aa31.56■■■□□ 2.64
CTSA-206ENST00000480961 CAMSAP2Q08AD1 1489 aa31.52■■■□□ 2.64
CTSA-206ENST00000480961 ZMYM4Q5VZL5 1548 aa31.52■■■□□ 2.64
CTSA-206ENST00000480961 MIA2Q96PC5 1412 aa31.49■■■□□ 2.63
CTSA-206ENST00000480961 MBD5Q9P267 1494 aa31.49■■■□□ 2.63
CTSA-206ENST00000480961 SPAG9O60271 1321 aaKnown RBP31.49■■■□□ 2.63
CTSA-206ENST00000480961 ZFYVE16Q7Z3T8 1539 aa31.48■■■□□ 2.63
CTSA-206ENST00000480961 KDM5CP41229 1560 aa31.47■■■□□ 2.63
CTSA-206ENST00000480961 MAGI2Q86UL8 1455 aa31.47■■■□□ 2.63
CTSA-206ENST00000480961 ARID4BQ4LE39 1312 aaPredicted RBP31.45■■■□□ 2.62
CTSA-206ENST00000480961 FGD6Q6ZV73 1430 aa31.44■■■□□ 2.62
CTSA-206ENST00000480961 MLH3Q9UHC1 1453 aa31.43■■■□□ 2.62
CTSA-206ENST00000480961 ARHGEF40Q8TER5 1519 aa31.43■■■□□ 2.62
CTSA-206ENST00000480961 KDM4FA0A1W2PPD8 638 aa31.4■■■□□ 2.62
CTSA-206ENST00000480961 ATP10AO60312 1499 aa31.39■■■□□ 2.62
CTSA-206ENST00000480961 HECW2Q9P2P5 1572 aa31.39■■■□□ 2.61
CTSA-206ENST00000480961 FAM50AQ14320 339 aaKnown RBP31.38■■■□□ 2.61
CTSA-206ENST00000480961 RSPH4AQ5TD94 716 aa31.37■■■□□ 2.61
CTSA-206ENST00000480961 CCDC141Q6ZP82 1450 aa31.37■■■□□ 2.61
CTSA-206ENST00000480961 PTPN23Q9H3S7 1636 aa31.35■■■□□ 2.61
CTSA-206ENST00000480961 TSPY4P0CV99 314 aa31.34■■■□□ 2.61
CTSA-206ENST00000480961 TSPY10P0CW01 314 aa31.34■■■□□ 2.61
CTSA-206ENST00000480961 MLECQ14165 292 aa31.32■■■□□ 2.6
CTSA-206ENST00000480961 C9orf84Q5VXU9 1444 aa31.32■■■□□ 2.6
CTSA-206ENST00000480961 DIP2CQ9Y2E4 1556 aa31.31■■■□□ 2.6
CTSA-206ENST00000480961 TCOF1Q13428 1488 aaKnown RBP31.31■■■□□ 2.6
CTSA-206ENST00000480961 ABCA6Q8N139 1617 aa31.31■■■□□ 2.6
CTSA-206ENST00000480961 KIDINS220Q9ULH0 1771 aa31.3■■■□□ 2.6
CTSA-206ENST00000480961 ATP7AQ04656 1500 aa31.3■■■□□ 2.6
CTSA-206ENST00000480961 ARHGEF5Q12774 1597 aa31.3■■■□□ 2.6
CTSA-206ENST00000480961 ABCC5O15440 1437 aa31.26■■■□□ 2.6
CTSA-206ENST00000480961 INO80Q9ULG1 1556 aaPredicted RBP31.26■■■□□ 2.59
CTSA-206ENST00000480961 RTEL1-TNFRSF6BF6WH68 1400 aa31.25■■■□□ 2.59
CTSA-206ENST00000480961 SIGLEC1Q9BZZ2 1709 aa31.24■■■□□ 2.59
CTSA-206ENST00000480961 CHIC2Q9UKJ5 165 aa31.23■■■□□ 2.59
CTSA-206ENST00000480961 DAPK1P53355 1430 aa31.21■■■□□ 2.59
CTSA-206ENST00000480961 AEBP2Q6ZN18 517 aaPredicted RBP31.19■■■□□ 2.58
CTSA-206ENST00000480961 A2MP01023 1474 aa31.18■■■□□ 2.58
CTSA-206ENST00000480961 ITGAEP38570 1179 aa31.17■■■□□ 2.58
CTSA-206ENST00000480961 RRP7BPQ9NSQ0 103 aa31.14■■■□□ 2.58
CTSA-206ENST00000480961 REREQ9P2R6 1566 aa31.13■■■□□ 2.57
CTSA-206ENST00000480961 DHX29Q7Z478 1369 aaKnown RBP31.13■■■□□ 2.57
CTSA-206ENST00000480961 DNMT1P26358 1616 aaKnown RBP31.13■■■□□ 2.57
CTSA-206ENST00000480961 BCORL1Q5H9F3 1711 aa31.11■■■□□ 2.57
CTSA-206ENST00000480961 MAST1Q9Y2H9 1570 aa31.11■■■□□ 2.57
CTSA-206ENST00000480961 AGLP35573 1532 aa31.09■■■□□ 2.57
CTSA-206ENST00000480961 SHANK2Q9UPX8 1470 aa31.08■■■□□ 2.57
CTSA-206ENST00000480961 PTPRKQ15262 1439 aa31.08■■■□□ 2.57
CTSA-206ENST00000480961 RRBP1Q9P2E9 1410 aaKnown RBP31.07■■■□□ 2.57
CTSA-206ENST00000480961 GGT6Q6P531 493 aa31.07■■■□□ 2.56
CTSA-206ENST00000480961 PLPPR3Q6T4P5 718 aa31.07■■■□□ 2.56
CTSA-206ENST00000480961 ADAMTSL3P82987 1691 aa31.06■■■□□ 2.56
CTSA-206ENST00000480961 KIF3BO15066 747 aa31.06■■■□□ 2.56
CTSA-206ENST00000480961 PLXNC1O60486 1568 aa31.05■■■□□ 2.56
CTSA-206ENST00000480961 KIF15Q9NS87 1388 aa31.05■■■□□ 2.56
CTSA-206ENST00000480961 ADGBQ8N7X0 1667 aa31.03■■■□□ 2.56
CTSA-206ENST00000480961 MADDQ8WXG6 1647 aa31.03■■■□□ 2.56
CTSA-206ENST00000480961 ANKRD30AQ9BXX3 1397 aa31.03■■■□□ 2.56
CTSA-206ENST00000480961 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.03■■■□□ 2.56
CTSA-206ENST00000480961 CROCC2H7BZ55 1655 aa31.03■■■□□ 2.56
CTSA-206ENST00000480961 NCOA1Q15788 1441 aa30.99■■■□□ 2.55
CTSA-206ENST00000480961 ESF1Q9H501 851 aaKnown RBP30.98■■■□□ 2.55
CTSA-206ENST00000480961 PTPRMP28827 1452 aa30.97■■■□□ 2.55
CTSA-206ENST00000480961 DUOX2Q9NRD8 1548 aa30.94■■■□□ 2.54
CTSA-206ENST00000480961 CEBPAP49715 358 aaPredicted RBP30.94■■■□□ 2.54
CTSA-206ENST00000480961 ADGRL2O95490 1459 aa30.94■■■□□ 2.54
CTSA-206ENST00000480961 RIMS1Q86UR5 1692 aaKnown RBP30.93■■■□□ 2.54
CTSA-206ENST00000480961 FER1L4A9Z1Z3 1794 aa30.87■■■□□ 2.53
CTSA-206ENST00000480961 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.86■■■□□ 2.534e-7■□□□□ 11
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms