RNA–Protein interactions for RNA: ENST00000480961.1

CTSA-206, Transcript of cathepsin A, humanhuman

TSL 2

Gene CTSA, Length 513 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-206ENST00000480961 NISCHQ9Y2I1 1504 aa48.89■■■■■ 5.42
CTSA-206ENST00000480961 CCDC180Q9P1Z9 1646 aa43.18■■■■■ 4.5
CTSA-206ENST00000480961 ABCC9O60706 1549 aa42.37■■■■■ 4.37
CTSA-206ENST00000480961 DCAF8L2P0C7V8 631 aa41.07■■■■■ 4.17
CTSA-206ENST00000480961 ZCCHC6Q5VYS8 1495 aaKnown RBP40.74■■■■■ 4.11
CTSA-206ENST00000480961 RB1CC1Q8TDY2 1594 aa40.65■■■■■ 4.1
CTSA-206ENST00000480961 NACADO15069 1562 aa40.65■■■■■ 4.1
CTSA-206ENST00000480961 MYO15BQ96JP2 1530 aa40.41■■■■■ 4.06
CTSA-206ENST00000480961 DCAF1Q9Y4B6 1507 aa40.34■■■■■ 4.05
CTSA-206ENST00000480961 PABPN1Q86U42 306 aaKnown RBP eCLIP39.77■■■■□ 3.968e-6■□□□□ 8.9
CTSA-206ENST00000480961 UNC13AQ9UPW8 1703 aa39.65■■■■□ 3.94
CTSA-206ENST00000480961 SCRIBQ14160 1630 aa39.64■■■■□ 3.94
CTSA-206ENST00000480961 BICRAQ9NZM4 1560 aa39.47■■■■□ 3.91
CTSA-206ENST00000480961 SHROOM4Q9ULL8 1493 aa39■■■■□ 3.83
CTSA-206ENST00000480961 DNAJC5BQ9UF47 199 aa38.83■■■■□ 3.81
CTSA-206ENST00000480961 EIF4G1Q04637 1599 aaKnown RBP38.41■■■■□ 3.74
CTSA-206ENST00000480961 CC2D2AQ9P2K1 1620 aa38.21■■■■□ 3.71
CTSA-206ENST00000480961 CECR2Q9BXF3 1484 aa38.18■■■■□ 3.7
CTSA-206ENST00000480961 SMARCA4P51532 1647 aa37.85■■■■□ 3.65
CTSA-206ENST00000480961 BAZ1AQ9NRL2 1556 aaPredicted RBP37.83■■■■□ 3.65
CTSA-206ENST00000480961 MROH2BQ7Z745 1585 aa37.75■■■■□ 3.63
CTSA-206ENST00000480961 ATAD2BQ9ULI0 1458 aa37.67■■■■□ 3.62
CTSA-206ENST00000480961 NCAPD3P42695 1498 aa37.58■■■■□ 3.61
CTSA-206ENST00000480961 SMARCA2P51531 1590 aa37.54■■■■□ 3.6
CTSA-206ENST00000480961 RSF1Q96T23 1441 aaPredicted RBP37.41■■■■□ 3.58
CTSA-206ENST00000480961 PEG3Q9GZU2 1588 aa37.41■■■■□ 3.58
CTSA-206ENST00000480961 BAZ1BQ9UIG0 1483 aaKnown RBP37.36■■■■□ 3.57
CTSA-206ENST00000480961 HMGXB3Q12766 1538 aa37.32■■■■□ 3.57
CTSA-206ENST00000480961 WIZO95785 1651 aa37.3■■■■□ 3.56
CTSA-206ENST00000480961 TOP2AP11388 1531 aaKnown RBP36.88■■■■□ 3.49
CTSA-206ENST00000480961 SUPT5HO00267 1087 aaKnown RBP36.81■■■■□ 3.48
CTSA-206ENST00000480961 NESP48681 1621 aa36.73■■■■□ 3.47
CTSA-206ENST00000480961 CADPSQ9ULU8 1353 aa36.55■■■■□ 3.44
CTSA-206ENST00000480961 CCDC88BA6NC98 1476 aa36.55■■■■□ 3.44
CTSA-206ENST00000480961 LAMC3Q9Y6N6 1575 aa36.47■■■■□ 3.43
CTSA-206ENST00000480961 ERCC6Q03468 1493 aa36.46■■■■□ 3.43
CTSA-206ENST00000480961 CFTRP13569 1480 aa36.33■■■■□ 3.41
CTSA-206ENST00000480961 PDS5BQ9NTI5 1447 aa36.33■■■■□ 3.41
CTSA-206ENST00000480961 KIF21AQ7Z4S6 1674 aa36.13■■■■□ 3.37
CTSA-206ENST00000480961 FANCD2Q9BXW9 1451 aa36.12■■■■□ 3.37
CTSA-206ENST00000480961 CEP164Q9UPV0 1460 aa36.03■■■■□ 3.36
CTSA-206ENST00000480961 THOC2Q8NI27 1593 aaKnown RBP35.95■■■■□ 3.35
CTSA-206ENST00000480961 MRC2Q9UBG0 1479 aa35.93■■■■□ 3.34
CTSA-206ENST00000480961 CUX2O14529 1486 aa35.88■■■■□ 3.33
CTSA-206ENST00000480961 PRDM2Q13029 1718 aa35.82■■■■□ 3.32
CTSA-206ENST00000480961 URB2Q14146 1524 aaKnown RBP35.76■■■■□ 3.31
CTSA-206ENST00000480961 WDR62O43379 1518 aa35.75■■■■□ 3.31
CTSA-206ENST00000480961 TOPBP1Q92547 1522 aa35.55■■■■□ 3.28
CTSA-206ENST00000480961 ABCC8Q09428 1581 aa35.47■■■■□ 3.27
CTSA-206ENST00000480961 DNMBPQ6XZF7 1577 aa35.47■■■■□ 3.27
CTSA-206ENST00000480961 CUX1P39880 1505 aa35.38■■■■□ 3.25
CTSA-206ENST00000480961 POLA1P09884 1462 aaPredicted RBP35.28■■■■□ 3.24
CTSA-206ENST00000480961 IFT140Q96RY7 1462 aa35.26■■■■□ 3.23
CTSA-206ENST00000480961 WRNQ14191 1432 aaPredicted RBP eCLIP35.24■■■■□ 3.23
CTSA-206ENST00000480961 FGD5Q6ZNL6 1462 aa35.23■■■■□ 3.23
CTSA-206ENST00000480961 RAD54L2Q9Y4B4 1467 aa35.21■■■■□ 3.23
CTSA-206ENST00000480961 SOGA1O94964 1423 aa35.19■■■■□ 3.22
CTSA-206ENST00000480961 ZNF608Q9ULD9 1512 aaPredicted RBP35.17■■■■□ 3.22
CTSA-206ENST00000480961 SYNJ1O43426 1573 aa35.12■■■■□ 3.21
CTSA-206ENST00000480961 TARBP1Q13395 1621 aaKnown RBP35.09■■■■□ 3.21
CTSA-206ENST00000480961 TOP2BQ02880 1626 aa35.04■■■■□ 3.2
CTSA-206ENST00000480961 AQRO60306 1485 aaKnown RBP eCLIP35.03■■■■□ 3.21e-8■■■■□ 19.3
CTSA-206ENST00000480961 TDRD9Q8NDG6 1382 aaKnown RBP35.03■■■■□ 3.2
CTSA-206ENST00000480961 BIVM-ERCC5R4GMW8 1640 aa34.99■■■■□ 3.19
CTSA-206ENST00000480961 EIF4G3O43432 1585 aaKnown RBP34.91■■■■□ 3.18
CTSA-206ENST00000480961 ABCA10Q8WWZ4 1543 aa34.84■■■■□ 3.17
CTSA-206ENST00000480961 WDR97A6NE52 1622 aa34.76■■■■□ 3.15
CTSA-206ENST00000480961 GAPVD1Q14C86 1478 aa34.74■■■■□ 3.15
CTSA-206ENST00000480961 DNAJC5Q9H3Z4 198 aa34.71■■■■□ 3.15
CTSA-206ENST00000480961 GRIN2BQ13224 1484 aa34.69■■■■□ 3.14
CTSA-206ENST00000480961 TRIM41Q8WV44 630 aa34.68■■■■□ 3.14
CTSA-206ENST00000480961 FBLN2P98095 1184 aa34.67■■■■□ 3.14
CTSA-206ENST00000480961 SNAPC4Q5SXM2 1469 aa34.65■■■■□ 3.14
CTSA-206ENST00000480961 ABCA5Q8WWZ7 1642 aa34.63■■■■□ 3.13
CTSA-206ENST00000480961 OSCARQ8IYS5 282 aa34.6■■■■□ 3.13
CTSA-206ENST00000480961 CHMP7Q8WUX9 453 aaPredicted RBP34.53■■■■□ 3.12
CTSA-206ENST00000480961 MAGI1Q96QZ7 1491 aaPredicted RBP34.52■■■■□ 3.12
CTSA-206ENST00000480961 PBRM1Q86U86 1689 aa34.5■■■■□ 3.11
CTSA-206ENST00000480961 KIF27Q86VH2 1401 aa34.48■■■■□ 3.11
CTSA-206ENST00000480961 SYNJ2O15056 1496 aa34.42■■■■□ 3.1
CTSA-206ENST00000480961 CHIC1Q5VXU3 224 aa34.41■■■■□ 3.1
CTSA-206ENST00000480961 ERICH3Q5RHP9 1530 aa34.4■■■■□ 3.1
CTSA-206ENST00000480961 CHD1O14646 1710 aa34.39■■■■□ 3.1
CTSA-206ENST00000480961 IGF1RP08069 1367 aa34.38■■■■□ 3.09
CTSA-206ENST00000480961 RUSC2Q8N2Y8 1516 aa34.35■■■■□ 3.09
CTSA-206ENST00000480961 FHAD1B1AJZ9 1412 aa34.34■■■■□ 3.09
CTSA-206ENST00000480961 ADAMTS12P58397 1594 aa34.32■■■■□ 3.08
CTSA-206ENST00000480961 GRIN2AQ12879 1464 aa34.24■■■■□ 3.07
CTSA-206ENST00000480961 CARMIL1Q5VZK9 1371 aa34.17■■■■□ 3.06
CTSA-206ENST00000480961 FAM9AQ8IZU1 332 aaPredicted RBP34.08■■■■□ 3.05
CTSA-206ENST00000480961 CLASP1Q7Z460 1538 aa34.07■■■■□ 3.04
CTSA-206ENST00000480961 CUL7Q14999 1698 aa34.06■■■■□ 3.04
CTSA-206ENST00000480961 NUP160Q12769 1436 aa34.06■■■■□ 3.04
CTSA-206ENST00000480961 CEP170Q5SW79 1584 aa34.05■■■■□ 3.04
CTSA-206ENST00000480961 CSRNP3Q8WYN3 585 aa33.99■■■■□ 3.03
CTSA-206ENST00000480961 ARHGEF11O15085 1522 aa33.94■■■■□ 3.02
CTSA-206ENST00000480961 RAPGEF2Q9Y4G8 1499 aa33.93■■■■□ 3.02
CTSA-206ENST00000480961 RIMBP3CA6NJZ7 1639 aa33.9■■■■□ 3.02
CTSA-206ENST00000480961 RIMBP3BA6NNM3 1639 aa33.9■■■■□ 3.02
CTSA-206ENST00000480961 RIMBP3Q9UFD9 1639 aa33.9■■■■□ 3.02
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms