RNA–Protein interactions for RNA: ENST00000477561.5

HDAC6-221, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 764 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-221ENST00000477561 MYO5CQ9NQX4 1742 aa13.21□□□□□ -0.3
HDAC6-221ENST00000477561 ARHGAP5Q13017 1502 aa13.2□□□□□ -0.3
HDAC6-221ENST00000477561 RICTORQ6R327 1708 aa13.18□□□□□ -0.3
HDAC6-221ENST00000477561 ARID4BQ4LE39 1312 aaPredicted RBP13.17□□□□□ -0.3
HDAC6-221ENST00000477561 ZNF777Q9ULD5 760 aaPredicted RBP13.17□□□□□ -0.3
HDAC6-221ENST00000477561 MTUS2Q5JR59 1369 aa13.17□□□□□ -0.3
HDAC6-221ENST00000477561 AFAP1Q8N556 730 aa13.16□□□□□ -0.3
HDAC6-221ENST00000477561 CDC42BPBQ9Y5S2 1711 aa13.16□□□□□ -0.3
HDAC6-221ENST00000477561 POGZQ7Z3K3 1410 aa13.15□□□□□ -0.3
HDAC6-221ENST00000477561 YEATS2Q9ULM3 1422 aa13.15□□□□□ -0.3
HDAC6-221ENST00000477561 MYT1LQ9UL68 1186 aa13.14□□□□□ -0.31
HDAC6-221ENST00000477561 PREX2Q70Z35 1606 aa13.13□□□□□ -0.31
HDAC6-221ENST00000477561 ZMYM4Q5VZL5 1548 aa13.13□□□□□ -0.31
HDAC6-221ENST00000477561 GPATCH8Q9UKJ3 1502 aaKnown RBP13.13□□□□□ -0.31
HDAC6-221ENST00000477561 VPS8Q8N3P4 1428 aa13.13□□□□□ -0.31
HDAC6-221ENST00000477561 CDC42BPAQ5VT25 1732 aa13.12□□□□□ -0.31
HDAC6-221ENST00000477561 ZFYVE16Q7Z3T8 1539 aa13.12□□□□□ -0.31
HDAC6-221ENST00000477561 ARHGEF40Q8TER5 1519 aa13.12□□□□□ -0.31
HDAC6-221ENST00000477561 CCNB3Q8WWL7 1395 aa13.11□□□□□ -0.31
HDAC6-221ENST00000477561 CFDP1Q9UEE9 299 aaPredicted RBP13.11□□□□□ -0.31
HDAC6-221ENST00000477561 ARHGEF12Q9NZN5 1544 aa13.11□□□□□ -0.31
HDAC6-221ENST00000477561 HNRNPMP52272 730 aaKnown RBP eCLIP13.1□□□□□ -0.31
HDAC6-221ENST00000477561 MLECQ14165 292 aa13.1□□□□□ -0.31
HDAC6-221ENST00000477561 TRAPPC8Q9Y2L5 1435 aa13.1□□□□□ -0.31
HDAC6-221ENST00000477561 ZNF518AQ6AHZ1 1483 aa13.1□□□□□ -0.31
HDAC6-221ENST00000477561 MAGI2Q86UL8 1455 aa13.1□□□□□ -0.31
HDAC6-221ENST00000477561 EHBP1L1Q8N3D4 1523 aa13.09□□□□□ -0.31
HDAC6-221ENST00000477561 ABCC1P33527 1531 aa13.08□□□□□ -0.31
HDAC6-221ENST00000477561 TIAM1Q13009 1591 aa13.07□□□□□ -0.32
HDAC6-221ENST00000477561 SIGLEC1Q9BZZ2 1709 aa13.07□□□□□ -0.32
HDAC6-221ENST00000477561 ZNF644Q9H582 1327 aaPredicted RBP13.07□□□□□ -0.32
HDAC6-221ENST00000477561 SAMD9LQ8IVG5 1584 aa13.07□□□□□ -0.32
HDAC6-221ENST00000477561 ITSN2Q9NZM3 1697 aa13.06□□□□□ -0.32
HDAC6-221ENST00000477561 ATP10AO60312 1499 aa13.06□□□□□ -0.32
HDAC6-221ENST00000477561 BCORL1Q5H9F3 1711 aa13.06□□□□□ -0.32
HDAC6-221ENST00000477561 KANK4Q5T7N3 995 aaPredicted RBP13.06□□□□□ -0.32
HDAC6-221ENST00000477561 KDM5CP41229 1560 aa13.06□□□□□ -0.32
HDAC6-221ENST00000477561 ADAMTSL3P82987 1691 aa13.05□□□□□ -0.32
HDAC6-221ENST00000477561 FOXD1Q16676 465 aa13.05□□□□□ -0.32
HDAC6-221ENST00000477561 NCOA2Q15596 1464 aa13.04□□□□□ -0.32
HDAC6-221ENST00000477561 SYCP2Q9BX26 1530 aa13.04□□□□□ -0.32
HDAC6-221ENST00000477561 HECW2Q9P2P5 1572 aa13.04□□□□□ -0.32
HDAC6-221ENST00000477561 C9orf84Q5VXU9 1444 aa13.04□□□□□ -0.32
HDAC6-221ENST00000477561 PTPRMP28827 1452 aa13.04□□□□□ -0.32
HDAC6-221ENST00000477561 LRRC9Q6ZRR7 1453 aa13.04□□□□□ -0.32
HDAC6-221ENST00000477561 MADDQ8WXG6 1647 aa13.03□□□□□ -0.32
HDAC6-221ENST00000477561 MLH3Q9UHC1 1453 aa13.03□□□□□ -0.32
HDAC6-221ENST00000477561 SUPT6HQ7KZ85 1726 aaKnown RBP13.02□□□□□ -0.32
HDAC6-221ENST00000477561 APLP2Q06481 763 aa13.02□□□□□ -0.33
HDAC6-221ENST00000477561 SPAG9O60271 1321 aaKnown RBP13.02□□□□□ -0.33
HDAC6-221ENST00000477561 DIP2CQ9Y2E4 1556 aa13.02□□□□□ -0.33
HDAC6-221ENST00000477561 KIAA1107Q9UPP5 1409 aa13.01□□□□□ -0.33
HDAC6-221ENST00000477561 PLEKHH2Q8IVE3 1493 aa13.01□□□□□ -0.33
HDAC6-221ENST00000477561 ABCA6Q8N139 1617 aa13.01□□□□□ -0.33
HDAC6-221ENST00000477561 KIDINS220Q9ULH0 1771 aa12.99□□□□□ -0.33
HDAC6-221ENST00000477561 RIMS1Q86UR5 1692 aaKnown RBP12.99□□□□□ -0.33
HDAC6-221ENST00000477561 MAP3K1Q13233 1512 aa12.98□□□□□ -0.33
HDAC6-221ENST00000477561 MBD5Q9P267 1494 aa12.97□□□□□ -0.33
HDAC6-221ENST00000477561 CAMSAP2Q08AD1 1489 aa12.96□□□□□ -0.34
HDAC6-221ENST00000477561 ATP7AQ04656 1500 aa12.95□□□□□ -0.34
HDAC6-221ENST00000477561 CEBPAP49715 358 aaPredicted RBP12.95□□□□□ -0.34
HDAC6-221ENST00000477561 REREQ9P2R6 1566 aa12.94□□□□□ -0.34
HDAC6-221ENST00000477561 FER1L4A9Z1Z3 1794 aa12.94□□□□□ -0.34
HDAC6-221ENST00000477561 ESF1Q9H501 851 aaKnown RBP12.93□□□□□ -0.34
HDAC6-221ENST00000477561 INO80Q9ULG1 1556 aaPredicted RBP12.93□□□□□ -0.34
HDAC6-221ENST00000477561 MYOM3Q5VTT5 1437 aa12.92□□□□□ -0.34
HDAC6-221ENST00000477561 AGLP35573 1532 aa12.92□□□□□ -0.34
HDAC6-221ENST00000477561 A2MP01023 1474 aa12.91□□□□□ -0.34
HDAC6-221ENST00000477561 CCDC141Q6ZP82 1450 aa12.91□□□□□ -0.34
HDAC6-221ENST00000477561 RSPH4AQ5TD94 716 aa12.91□□□□□ -0.34
HDAC6-221ENST00000477561 TSPY4P0CV99 314 aa12.9□□□□□ -0.34
HDAC6-221ENST00000477561 TSPY10P0CW01 314 aa12.9□□□□□ -0.34
HDAC6-221ENST00000477561 GGT6Q6P531 493 aa12.9□□□□□ -0.34
HDAC6-221ENST00000477561 RTEL1-TNFRSF6BF6WH68 1400 aa12.89□□□□□ -0.35
HDAC6-221ENST00000477561 MIA2Q96PC5 1412 aa12.88□□□□□ -0.35
HDAC6-221ENST00000477561 HSPA2P54652 639 aa12.88□□□□□ -0.35
HDAC6-221ENST00000477561 ARHGEF5Q12774 1597 aa12.87□□□□□ -0.35
HDAC6-221ENST00000477561 LMTK3Q96Q04 1460 aa12.87□□□□□ -0.35
HDAC6-221ENST00000477561 PPARGC1BQ86YN6 1023 aaKnown RBP12.87□□□□□ -0.35
HDAC6-221ENST00000477561 PLXNC1O60486 1568 aa12.86□□□□□ -0.35
HDAC6-221ENST00000477561 DHX29Q7Z478 1369 aaKnown RBP12.86□□□□□ -0.35
HDAC6-221ENST00000477561 ADGBQ8N7X0 1667 aa12.86□□□□□ -0.35
HDAC6-221ENST00000477561 KIF3BO15066 747 aa12.85□□□□□ -0.35
HDAC6-221ENST00000477561 PTPN23Q9H3S7 1636 aa12.84□□□□□ -0.35
HDAC6-221ENST00000477561 FGD6Q6ZV73 1430 aa12.83□□□□□ -0.36
HDAC6-221ENST00000477561 C3P01024 1663 aa12.83□□□□□ -0.36
HDAC6-221ENST00000477561 ZMYM3Q14202 1370 aa12.82□□□□□ -0.36
HDAC6-221ENST00000477561 CNTLNQ9NXG0 1405 aa12.82□□□□□ -0.36
HDAC6-221ENST00000477561 ABCC5O15440 1437 aa12.81□□□□□ -0.36
HDAC6-221ENST00000477561 CLTCQ00610 1675 aaKnown RBP12.81□□□□□ -0.36
HDAC6-221ENST00000477561 FAM50AQ14320 339 aaKnown RBP12.81□□□□□ -0.36
HDAC6-221ENST00000477561 CHIC2Q9UKJ5 165 aa12.81□□□□□ -0.36
HDAC6-221ENST00000477561 RRP7BPQ9NSQ0 103 aa12.8□□□□□ -0.36
HDAC6-221ENST00000477561 MAST1Q9Y2H9 1570 aa12.8□□□□□ -0.36
HDAC6-221ENST00000477561 TCOF1Q13428 1488 aaKnown RBP12.79□□□□□ -0.36
HDAC6-221ENST00000477561 DAPK1P53355 1430 aa12.79□□□□□ -0.36
HDAC6-221ENST00000477561 UHRF1BP1Q6BDS2 1440 aa12.79□□□□□ -0.36
HDAC6-221ENST00000477561 PREX1Q8TCU6 1659 aa12.78□□□□□ -0.36
HDAC6-221ENST00000477561 PPP6R1Q9UPN7 881 aa12.78□□□□□ -0.36
HDAC6-221ENST00000477561 WASHC2CQ9Y4E1 1318 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms