RNA–Protein interactions for RNA: ENST00000477508.1

TOP3A-205, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 600 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-205ENST00000477508 CCNB3Q8WWL7 1395 aa20.51■□□□□ 0.87
TOP3A-205ENST00000477508 SUPT6HQ7KZ85 1726 aaKnown RBP20.51■□□□□ 0.87
TOP3A-205ENST00000477508 AKNAQ7Z591 1439 aa20.51■□□□□ 0.87
TOP3A-205ENST00000477508 ARHGAP5Q13017 1502 aa20.5■□□□□ 0.87
TOP3A-205ENST00000477508 KANK4Q5T7N3 995 aaPredicted RBP20.49■□□□□ 0.87
TOP3A-205ENST00000477508 PREX2Q70Z35 1606 aa20.49■□□□□ 0.87
TOP3A-205ENST00000477508 GPATCH8Q9UKJ3 1502 aaKnown RBP20.48■□□□□ 0.87
TOP3A-205ENST00000477508 CDC42BPAQ5VT25 1732 aa20.47■□□□□ 0.87
TOP3A-205ENST00000477508 NCOA2Q15596 1464 aa20.47■□□□□ 0.87
TOP3A-205ENST00000477508 COL17A1Q9UMD9 1497 aaPredicted RBP20.47■□□□□ 0.87
TOP3A-205ENST00000477508 CDC42BPBQ9Y5S2 1711 aa20.46■□□□□ 0.87
TOP3A-205ENST00000477508 CFDP1Q9UEE9 299 aaPredicted RBP20.45■□□□□ 0.86
TOP3A-205ENST00000477508 DENND4BO75064 1496 aaPredicted RBP20.43■□□□□ 0.86
TOP3A-205ENST00000477508 ADGRL1O94910 1474 aa20.43■□□□□ 0.86
TOP3A-205ENST00000477508 ITSN2Q9NZM3 1697 aa20.43■□□□□ 0.86
TOP3A-205ENST00000477508 SCAPERQ9BY12 1400 aa20.41■□□□□ 0.86
TOP3A-205ENST00000477508 PLEKHH2Q8IVE3 1493 aa20.39■□□□□ 0.85
TOP3A-205ENST00000477508 RAPGEF3O95398 923 aa20.39■□□□□ 0.85
TOP3A-205ENST00000477508 ZNF777Q9ULD5 760 aaPredicted RBP20.38■□□□□ 0.85
TOP3A-205ENST00000477508 POGZQ7Z3K3 1410 aa20.36■□□□□ 0.85
TOP3A-205ENST00000477508 KIAA1107Q9UPP5 1409 aa20.36■□□□□ 0.85
TOP3A-205ENST00000477508 ABCC1P33527 1531 aa20.35■□□□□ 0.85
TOP3A-205ENST00000477508 RICTORQ6R327 1708 aa20.35■□□□□ 0.85
TOP3A-205ENST00000477508 MYOM3Q5VTT5 1437 aa20.35■□□□□ 0.85
TOP3A-205ENST00000477508 ZNF518AQ6AHZ1 1483 aa20.34■□□□□ 0.85
TOP3A-205ENST00000477508 MIA2Q96PC5 1412 aa20.34■□□□□ 0.85
TOP3A-205ENST00000477508 SAMD9LQ8IVG5 1584 aa20.34■□□□□ 0.85
TOP3A-205ENST00000477508 MAGI2Q86UL8 1455 aa20.32■□□□□ 0.84
TOP3A-205ENST00000477508 FRMPD1Q5SYB0 1578 aa20.32■□□□□ 0.84
TOP3A-205ENST00000477508 ZMYM4Q5VZL5 1548 aa20.32■□□□□ 0.84
TOP3A-205ENST00000477508 RSPH4AQ5TD94 716 aa20.3■□□□□ 0.84
TOP3A-205ENST00000477508 AFAP1Q8N556 730 aa20.29■□□□□ 0.84
TOP3A-205ENST00000477508 ARHGEF12Q9NZN5 1544 aa20.28■□□□□ 0.84
TOP3A-205ENST00000477508 HNRNPMP52272 730 aaKnown RBP eCLIP20.28■□□□□ 0.84
TOP3A-205ENST00000477508 ZNF644Q9H582 1327 aaPredicted RBP20.27■□□□□ 0.84
TOP3A-205ENST00000477508 SYCP2Q9BX26 1530 aa20.27■□□□□ 0.84
TOP3A-205ENST00000477508 KDM5CP41229 1560 aa20.27■□□□□ 0.84
TOP3A-205ENST00000477508 TRAPPC8Q9Y2L5 1435 aa20.27■□□□□ 0.83
TOP3A-205ENST00000477508 CAMSAP2Q08AD1 1489 aa20.26■□□□□ 0.83
TOP3A-205ENST00000477508 MLH3Q9UHC1 1453 aa20.24■□□□□ 0.83
TOP3A-205ENST00000477508 FGD6Q6ZV73 1430 aa20.24■□□□□ 0.83
TOP3A-205ENST00000477508 MBD5Q9P267 1494 aa20.24■□□□□ 0.83
TOP3A-205ENST00000477508 MYT1LQ9UL68 1186 aa20.23■□□□□ 0.83
TOP3A-205ENST00000477508 ZFYVE16Q7Z3T8 1539 aa20.22■□□□□ 0.83
TOP3A-205ENST00000477508 SPAG9O60271 1321 aaKnown RBP20.22■□□□□ 0.83
TOP3A-205ENST00000477508 HECW2Q9P2P5 1572 aa20.21■□□□□ 0.83
TOP3A-205ENST00000477508 ARHGEF40Q8TER5 1519 aa20.21■□□□□ 0.83
TOP3A-205ENST00000477508 ARHGEF5Q12774 1597 aa20.21■□□□□ 0.83
TOP3A-205ENST00000477508 CCDC141Q6ZP82 1450 aa20.2■□□□□ 0.82
TOP3A-205ENST00000477508 PTPN23Q9H3S7 1636 aa20.2■□□□□ 0.82
TOP3A-205ENST00000477508 PPARGC1BQ86YN6 1023 aaKnown RBP20.19■□□□□ 0.82
TOP3A-205ENST00000477508 TCOF1Q13428 1488 aaKnown RBP20.18■□□□□ 0.82
TOP3A-205ENST00000477508 TSPY4P0CV99 314 aa20.18■□□□□ 0.82
TOP3A-205ENST00000477508 TSPY10P0CW01 314 aa20.18■□□□□ 0.82
TOP3A-205ENST00000477508 YEATS2Q9ULM3 1422 aa20.18■□□□□ 0.82
TOP3A-205ENST00000477508 ATP10AO60312 1499 aa20.18■□□□□ 0.82
TOP3A-205ENST00000477508 RTEL1-TNFRSF6BF6WH68 1400 aa20.17■□□□□ 0.82
TOP3A-205ENST00000477508 KIDINS220Q9ULH0 1771 aa20.14■□□□□ 0.81
TOP3A-205ENST00000477508 ATP7AQ04656 1500 aa20.13■□□□□ 0.81
TOP3A-205ENST00000477508 C9orf84Q5VXU9 1444 aa20.13■□□□□ 0.81
TOP3A-205ENST00000477508 INO80Q9ULG1 1556 aaPredicted RBP20.12■□□□□ 0.81
TOP3A-205ENST00000477508 ARID4BQ4LE39 1312 aaPredicted RBP20.11■□□□□ 0.81
TOP3A-205ENST00000477508 FAM50AQ14320 339 aaKnown RBP20.11■□□□□ 0.81
TOP3A-205ENST00000477508 REREQ9P2R6 1566 aa20.11■□□□□ 0.81
TOP3A-205ENST00000477508 DIP2CQ9Y2E4 1556 aa20.11■□□□□ 0.81
TOP3A-205ENST00000477508 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.1■□□□□ 0.81
TOP3A-205ENST00000477508 ABCA6Q8N139 1617 aa20.09■□□□□ 0.81
TOP3A-205ENST00000477508 MAST1Q9Y2H9 1570 aa20.08■□□□□ 0.81
TOP3A-205ENST00000477508 ABCC5O15440 1437 aa20.08■□□□□ 0.8
TOP3A-205ENST00000477508 SHANK2Q9UPX8 1470 aa20.07■□□□□ 0.8
TOP3A-205ENST00000477508 DNMT1P26358 1616 aaKnown RBP20.07■□□□□ 0.8
TOP3A-205ENST00000477508 DAPK1P53355 1430 aa20.07■□□□□ 0.8
TOP3A-205ENST00000477508 ADGBQ8N7X0 1667 aa20.05■□□□□ 0.8
TOP3A-205ENST00000477508 A2MP01023 1474 aa20.05■□□□□ 0.8
TOP3A-205ENST00000477508 RRBP1Q9P2E9 1410 aaKnown RBP20.04■□□□□ 0.8
TOP3A-205ENST00000477508 AGLP35573 1532 aa20.04■□□□□ 0.8
TOP3A-205ENST00000477508 CROCC2H7BZ55 1655 aa20.03■□□□□ 0.8
TOP3A-205ENST00000477508 DHX29Q7Z478 1369 aaKnown RBP20.02■□□□□ 0.8
TOP3A-205ENST00000477508 KDM4FA0A1W2PPD8 638 aa20.01■□□□□ 0.79
TOP3A-205ENST00000477508 PLXNC1O60486 1568 aa20■□□□□ 0.79
TOP3A-205ENST00000477508 BCORL1Q5H9F3 1711 aa20■□□□□ 0.79
TOP3A-205ENST00000477508 ANKRD30AQ9BXX3 1397 aa19.99■□□□□ 0.79
TOP3A-205ENST00000477508 SIGLEC1Q9BZZ2 1709 aa19.97■□□□□ 0.79
TOP3A-205ENST00000477508 FOXD1Q16676 465 aa19.97■□□□□ 0.79
TOP3A-205ENST00000477508 ADGRL2O95490 1459 aa19.96■□□□□ 0.79
TOP3A-205ENST00000477508 ADAMTSL3P82987 1691 aa19.96■□□□□ 0.79
TOP3A-205ENST00000477508 KIF15Q9NS87 1388 aa19.95■□□□□ 0.79
TOP3A-205ENST00000477508 NCOA1Q15788 1441 aa19.95■□□□□ 0.78
TOP3A-205ENST00000477508 MLECQ14165 292 aa19.95■□□□□ 0.78
TOP3A-205ENST00000477508 CHIC2Q9UKJ5 165 aa19.95■□□□□ 0.78
TOP3A-205ENST00000477508 DUOX2Q9NRD8 1548 aa19.95■□□□□ 0.78
TOP3A-205ENST00000477508 RRP7BPQ9NSQ0 103 aa19.94■□□□□ 0.78
TOP3A-205ENST00000477508 PPP6R1Q9UPN7 881 aa19.94■□□□□ 0.78
TOP3A-205ENST00000477508 ROCK1Q13464 1354 aa19.93■□□□□ 0.78
TOP3A-205ENST00000477508 KIF3BO15066 747 aa19.91■□□□□ 0.78
TOP3A-205ENST00000477508 ITGAEP38570 1179 aa19.91■□□□□ 0.78
TOP3A-205ENST00000477508 ESF1Q9H501 851 aaKnown RBP19.91■□□□□ 0.78
TOP3A-205ENST00000477508 PTPRKQ15262 1439 aa19.9■□□□□ 0.78
TOP3A-205ENST00000477508 ERBINQ96RT1 1412 aa19.9■□□□□ 0.78
TOP3A-205ENST00000477508 MADDQ8WXG6 1647 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 329 ms