RNA–Protein interactions for RNA: ENST00000477508.1

TOP3A-205, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 600 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-205ENST00000477508 NISCHQ9Y2I1 1504 aa31.45■■■□□ 2.63
TOP3A-205ENST00000477508 CCDC180Q9P1Z9 1646 aa27.9■■■□□ 2.06
TOP3A-205ENST00000477508 ABCC9O60706 1549 aa27.06■■□□□ 1.92
TOP3A-205ENST00000477508 ZCCHC6Q5VYS8 1495 aaKnown RBP26.22■■□□□ 1.79
TOP3A-205ENST00000477508 NACADO15069 1562 aa26.21■■□□□ 1.79
TOP3A-205ENST00000477508 DCAF8L2P0C7V8 631 aa26.2■■□□□ 1.78
TOP3A-205ENST00000477508 RB1CC1Q8TDY2 1594 aa26.18■■□□□ 1.78
TOP3A-205ENST00000477508 MYO15BQ96JP2 1530 aa26.14■■□□□ 1.78
TOP3A-205ENST00000477508 DCAF1Q9Y4B6 1507 aa26.09■■□□□ 1.77
TOP3A-205ENST00000477508 UNC13AQ9UPW8 1703 aa25.5■■□□□ 1.67
TOP3A-205ENST00000477508 AEBP2Q6ZN18 517 aaPredicted RBP25.47■■□□□ 1.67
TOP3A-205ENST00000477508 CHIC1Q5VXU3 224 aa25.45■■□□□ 1.66
TOP3A-205ENST00000477508 SCRIBQ14160 1630 aa25.4■■□□□ 1.66
TOP3A-205ENST00000477508 PABPN1Q86U42 306 aaKnown RBP eCLIP25.32■■□□□ 1.64
TOP3A-205ENST00000477508 BICRAQ9NZM4 1560 aa25.31■■□□□ 1.64
TOP3A-205ENST00000477508 SHROOM4Q9ULL8 1493 aa25.19■■□□□ 1.62
TOP3A-205ENST00000477508 DNAJC5BQ9UF47 199 aa24.7■■□□□ 1.54
TOP3A-205ENST00000477508 EIF4G1Q04637 1599 aaKnown RBP24.66■■□□□ 1.54
TOP3A-205ENST00000477508 CC2D2AQ9P2K1 1620 aa24.5■■□□□ 1.51
TOP3A-205ENST00000477508 CECR2Q9BXF3 1484 aa24.43■■□□□ 1.5
TOP3A-205ENST00000477508 BAZ1AQ9NRL2 1556 aaPredicted RBP24.38■■□□□ 1.49
TOP3A-205ENST00000477508 SMARCA4P51532 1647 aa24.35■■□□□ 1.49
TOP3A-205ENST00000477508 SMARCA2P51531 1590 aa24.2■■□□□ 1.47
TOP3A-205ENST00000477508 MROH2BQ7Z745 1585 aa24.2■■□□□ 1.46
TOP3A-205ENST00000477508 ATAD2BQ9ULI0 1458 aa24.19■■□□□ 1.46
TOP3A-205ENST00000477508 NCAPD3P42695 1498 aa24.18■■□□□ 1.46
TOP3A-205ENST00000477508 PEG3Q9GZU2 1588 aa24.14■■□□□ 1.45
TOP3A-205ENST00000477508 HMGXB3Q12766 1538 aa24.06■■□□□ 1.44
TOP3A-205ENST00000477508 RSF1Q96T23 1441 aaPredicted RBP24.02■■□□□ 1.44
TOP3A-205ENST00000477508 BAZ1BQ9UIG0 1483 aaKnown RBP24■■□□□ 1.43
TOP3A-205ENST00000477508 WIZO95785 1651 aa23.93■■□□□ 1.42
TOP3A-205ENST00000477508 TOP2AP11388 1531 aaKnown RBP23.74■■□□□ 1.39
TOP3A-205ENST00000477508 SUPT5HO00267 1087 aaKnown RBP23.54■■□□□ 1.36
TOP3A-205ENST00000477508 LAMC3Q9Y6N6 1575 aa23.51■■□□□ 1.35
TOP3A-205ENST00000477508 CADPSQ9ULU8 1353 aa23.48■■□□□ 1.35
TOP3A-205ENST00000477508 CCDC88BA6NC98 1476 aa23.45■■□□□ 1.34
TOP3A-205ENST00000477508 NESP48681 1621 aa23.44■■□□□ 1.34
TOP3A-205ENST00000477508 PDS5BQ9NTI5 1447 aa23.38■■□□□ 1.33
TOP3A-205ENST00000477508 CFTRP13569 1480 aa23.37■■□□□ 1.33
TOP3A-205ENST00000477508 ERCC6Q03468 1493 aa23.36■■□□□ 1.33
TOP3A-205ENST00000477508 PRDM2Q13029 1718 aa23.19■■□□□ 1.3
TOP3A-205ENST00000477508 KIF21AQ7Z4S6 1674 aa23.19■■□□□ 1.3
TOP3A-205ENST00000477508 FANCD2Q9BXW9 1451 aa23.18■■□□□ 1.3
TOP3A-205ENST00000477508 CEP164Q9UPV0 1460 aa23.15■■□□□ 1.3
TOP3A-205ENST00000477508 CUX2O14529 1486 aa23.08■■□□□ 1.29
TOP3A-205ENST00000477508 MRC2Q9UBG0 1479 aa23.08■■□□□ 1.29
TOP3A-205ENST00000477508 THOC2Q8NI27 1593 aaKnown RBP23.07■■□□□ 1.28
TOP3A-205ENST00000477508 WDR62O43379 1518 aa22.98■■□□□ 1.27
TOP3A-205ENST00000477508 ABCC8Q09428 1581 aa22.93■■□□□ 1.26
TOP3A-205ENST00000477508 URB2Q14146 1524 aaKnown RBP22.91■■□□□ 1.26
TOP3A-205ENST00000477508 DNAJC5Q9H3Z4 198 aa22.88■■□□□ 1.25
TOP3A-205ENST00000477508 DNMBPQ6XZF7 1577 aa22.83■■□□□ 1.25
TOP3A-205ENST00000477508 TOPBP1Q92547 1522 aa22.82■■□□□ 1.24
TOP3A-205ENST00000477508 CUX1P39880 1505 aa22.7■■□□□ 1.22
TOP3A-205ENST00000477508 IFT140Q96RY7 1462 aa22.67■■□□□ 1.22
TOP3A-205ENST00000477508 WRNQ14191 1432 aaPredicted RBP eCLIP22.66■■□□□ 1.22
TOP3A-205ENST00000477508 POLA1P09884 1462 aaPredicted RBP22.64■■□□□ 1.21
TOP3A-205ENST00000477508 FGD5Q6ZNL6 1462 aa22.6■■□□□ 1.21
TOP3A-205ENST00000477508 SOGA1O94964 1423 aa22.58■■□□□ 1.21
TOP3A-205ENST00000477508 TOP2BQ02880 1626 aa22.58■■□□□ 1.21
TOP3A-205ENST00000477508 BIVM-ERCC5R4GMW8 1640 aa22.57■■□□□ 1.2
TOP3A-205ENST00000477508 TARBP1Q13395 1621 aaKnown RBP22.55■■□□□ 1.2
TOP3A-205ENST00000477508 SYNJ1O43426 1573 aa22.53■■□□□ 1.2
TOP3A-205ENST00000477508 RAD54L2Q9Y4B4 1467 aa22.51■■□□□ 1.19
TOP3A-205ENST00000477508 ZNF608Q9ULD9 1512 aaPredicted RBP22.48■■□□□ 1.19
TOP3A-205ENST00000477508 WDR97A6NE52 1622 aa22.46■■□□□ 1.19
TOP3A-205ENST00000477508 ABCA10Q8WWZ4 1543 aa22.43■■□□□ 1.18
TOP3A-205ENST00000477508 EIF4G3O43432 1585 aaKnown RBP22.42■■□□□ 1.18
TOP3A-205ENST00000477508 TDRD9Q8NDG6 1382 aaKnown RBP22.4■■□□□ 1.18
TOP3A-205ENST00000477508 AQRO60306 1485 aaKnown RBP eCLIP22.4■■□□□ 1.184e-6■□□□□ 9.9
TOP3A-205ENST00000477508 PHF23Q9BUL5 403 aaPredicted RBP22.33■■□□□ 1.17
TOP3A-205ENST00000477508 GAPVD1Q14C86 1478 aa22.32■■□□□ 1.16
TOP3A-205ENST00000477508 GRIN2BQ13224 1484 aa22.31■■□□□ 1.16
TOP3A-205ENST00000477508 ABCA5Q8WWZ7 1642 aa22.28■■□□□ 1.16
TOP3A-205ENST00000477508 TRIM41Q8WV44 630 aa22.28■■□□□ 1.16
TOP3A-205ENST00000477508 MAGI1Q96QZ7 1491 aaPredicted RBP22.24■■□□□ 1.15
TOP3A-205ENST00000477508 PBRM1Q86U86 1689 aa22.21■■□□□ 1.15
TOP3A-205ENST00000477508 KIF27Q86VH2 1401 aa22.21■■□□□ 1.15
TOP3A-205ENST00000477508 SNAPC4Q5SXM2 1469 aa22.2■■□□□ 1.14
TOP3A-205ENST00000477508 ERICH3Q5RHP9 1530 aa22.18■■□□□ 1.14
TOP3A-205ENST00000477508 OSCARQ8IYS5 282 aa22.18■■□□□ 1.14
TOP3A-205ENST00000477508 CHMP7Q8WUX9 453 aaPredicted RBP22.14■■□□□ 1.13
TOP3A-205ENST00000477508 SYNJ2O15056 1496 aa22.14■■□□□ 1.13
TOP3A-205ENST00000477508 FBLN2P98095 1184 aa22.13■■□□□ 1.13
TOP3A-205ENST00000477508 FHAD1B1AJZ9 1412 aa22.09■■□□□ 1.13
TOP3A-205ENST00000477508 CHD1O14646 1710 aa22.09■■□□□ 1.13
TOP3A-205ENST00000477508 IGF1RP08069 1367 aa22.07■■□□□ 1.12
TOP3A-205ENST00000477508 ADAMTS12P58397 1594 aa22.06■■□□□ 1.12
TOP3A-205ENST00000477508 CUL7Q14999 1698 aa22.01■■□□□ 1.11
TOP3A-205ENST00000477508 GRIN2AQ12879 1464 aa21.99■■□□□ 1.11
TOP3A-205ENST00000477508 CARMIL1Q5VZK9 1371 aa21.95■■□□□ 1.1
TOP3A-205ENST00000477508 RUSC2Q8N2Y8 1516 aa21.95■■□□□ 1.1
TOP3A-205ENST00000477508 EEA1Q15075 1411 aa21.94■■□□□ 1.1
TOP3A-205ENST00000477508 NUP160Q12769 1436 aa21.89■■□□□ 1.1
TOP3A-205ENST00000477508 CLASP1Q7Z460 1538 aa21.88■■□□□ 1.09
TOP3A-205ENST00000477508 CSRNP3Q8WYN3 585 aa21.85■■□□□ 1.09
TOP3A-205ENST00000477508 CEP170Q5SW79 1584 aa21.84■■□□□ 1.09
TOP3A-205ENST00000477508 RAPGEF2Q9Y4G8 1499 aa21.83■■□□□ 1.09
TOP3A-205ENST00000477508 PRXQ9BXM0 1461 aa21.79■■□□□ 1.08
TOP3A-205ENST00000477508 KIAA0586Q9BVV6 1533 aa21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms