RNA–Protein interactions for RNA: ENST00000474409.1

CNN3-205, Transcript of calponin 3, humanhuman

TSL 3

Gene CNN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNN3-205ENST00000474409 SAMD9LQ8IVG5 1584 aa12.85□□□□□ -0.35
CNN3-205ENST00000474409 ADGBQ8N7X0 1667 aa12.84□□□□□ -0.35
CNN3-205ENST00000474409 GPATCH8Q9UKJ3 1502 aaKnown RBP12.83□□□□□ -0.35
CNN3-205ENST00000474409 FGD6Q6ZV73 1430 aa12.83□□□□□ -0.36
CNN3-205ENST00000474409 CAMSAP2Q08AD1 1489 aa12.82□□□□□ -0.36
CNN3-205ENST00000474409 DNMT1P26358 1616 aaKnown RBP12.8□□□□□ -0.36
CNN3-205ENST00000474409 MIA2Q96PC5 1412 aa12.8□□□□□ -0.36
CNN3-205ENST00000474409 ABCC1P33527 1531 aa12.8□□□□□ -0.36
CNN3-205ENST00000474409 RRBP1Q9P2E9 1410 aaKnown RBP12.79□□□□□ -0.36
CNN3-205ENST00000474409 CD109Q6YHK3 1445 aa12.79□□□□□ -0.36
CNN3-205ENST00000474409 FANCAO15360 1455 aa12.78□□□□□ -0.36
CNN3-205ENST00000474409 TCOF1Q13428 1488 aaKnown RBP12.78□□□□□ -0.36
CNN3-205ENST00000474409 SYCP2Q9BX26 1530 aa12.78□□□□□ -0.36
CNN3-205ENST00000474409 RICTORQ6R327 1708 aa12.78□□□□□ -0.36
CNN3-205ENST00000474409 PLCH2O75038 1416 aa12.78□□□□□ -0.36
CNN3-205ENST00000474409 TEX14Q8IWB6 1497 aa12.78□□□□□ -0.36
CNN3-205ENST00000474409 ARHGEF5Q12774 1597 aa12.77□□□□□ -0.37
CNN3-205ENST00000474409 FAM69CQ0P6D2 419 aa12.76□□□□□ -0.37
CNN3-205ENST00000474409 PLEKHH2Q8IVE3 1493 aa12.75□□□□□ -0.37
CNN3-205ENST00000474409 GCC2Q8IWJ2 1684 aa12.75□□□□□ -0.37
CNN3-205ENST00000474409 CFDP1Q9UEE9 299 aaPredicted RBP12.75□□□□□ -0.37
CNN3-205ENST00000474409 NEO1Q92859 1461 aa12.74□□□□□ -0.37
CNN3-205ENST00000474409 ADGRL1O94910 1474 aa12.73□□□□□ -0.37
CNN3-205ENST00000474409 ZNF777Q9ULD5 760 aaPredicted RBP12.73□□□□□ -0.37
CNN3-205ENST00000474409 FAM50AQ14320 339 aaKnown RBP12.72□□□□□ -0.37
CNN3-205ENST00000474409 CCDC141Q6ZP82 1450 aa12.71□□□□□ -0.38
CNN3-205ENST00000474409 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.7□□□□□ -0.38
CNN3-205ENST00000474409 HECW2Q9P2P5 1572 aa12.7□□□□□ -0.38
CNN3-205ENST00000474409 INO80Q9ULG1 1556 aaPredicted RBP12.7□□□□□ -0.38
CNN3-205ENST00000474409 MAST1Q9Y2H9 1570 aa12.7□□□□□ -0.38
CNN3-205ENST00000474409 TRHP20396 242 aaPredicted RBP12.7□□□□□ -0.38
CNN3-205ENST00000474409 EFCAB2Q5VUJ9 269 aa12.7□□□□□ -0.38
CNN3-205ENST00000474409 AKNAQ7Z591 1439 aa12.7□□□□□ -0.38
CNN3-205ENST00000474409 KDM6BO15054 1643 aa12.7□□□□□ -0.38
CNN3-205ENST00000474409 FRMPD1Q5SYB0 1578 aa12.69□□□□□ -0.38
CNN3-205ENST00000474409 TRIM26Q12899 539 aaPredicted RBP12.69□□□□□ -0.38
CNN3-205ENST00000474409 SHANK2Q9UPX8 1470 aa12.69□□□□□ -0.38
CNN3-205ENST00000474409 DAPK1P53355 1430 aa12.69□□□□□ -0.38
CNN3-205ENST00000474409 PLXNC1O60486 1568 aa12.69□□□□□ -0.38
CNN3-205ENST00000474409 KIDINS220Q9ULH0 1771 aa12.68□□□□□ -0.38
CNN3-205ENST00000474409 KDM5CP41229 1560 aa12.68□□□□□ -0.38
CNN3-205ENST00000474409 ARHGEF12Q9NZN5 1544 aa12.67□□□□□ -0.38
CNN3-205ENST00000474409 KIAA1107Q9UPP5 1409 aa12.67□□□□□ -0.38
CNN3-205ENST00000474409 ZFYVE16Q7Z3T8 1539 aa12.67□□□□□ -0.38
CNN3-205ENST00000474409 ZNF518AQ6AHZ1 1483 aa12.66□□□□□ -0.38
CNN3-205ENST00000474409 ZNF644Q9H582 1327 aaPredicted RBP12.66□□□□□ -0.38
CNN3-205ENST00000474409 POGZQ7Z3K3 1410 aa12.66□□□□□ -0.38
CNN3-205ENST00000474409 ATP7AQ04656 1500 aa12.66□□□□□ -0.38
CNN3-205ENST00000474409 MBD5Q9P267 1494 aa12.65□□□□□ -0.38
CNN3-205ENST00000474409 SCAPERQ9BY12 1400 aa12.65□□□□□ -0.38
CNN3-205ENST00000474409 ZMYM4Q5VZL5 1548 aa12.64□□□□□ -0.39
CNN3-205ENST00000474409 ABCA6Q8N139 1617 aa12.64□□□□□ -0.39
CNN3-205ENST00000474409 ITGAEP38570 1179 aa12.64□□□□□ -0.39
CNN3-205ENST00000474409 DENND4BO75064 1496 aaPredicted RBP12.64□□□□□ -0.39
CNN3-205ENST00000474409 ABCC5O15440 1437 aa12.63□□□□□ -0.39
CNN3-205ENST00000474409 C9orf84Q5VXU9 1444 aa12.62□□□□□ -0.39
CNN3-205ENST00000474409 TRAPPC8Q9Y2L5 1435 aa12.62□□□□□ -0.39
CNN3-205ENST00000474409 ADGRL2O95490 1459 aa12.61□□□□□ -0.39
CNN3-205ENST00000474409 HNRNPMP52272 730 aaKnown RBP eCLIP12.61□□□□□ -0.396e-8■■■□□ 17.8
CNN3-205ENST00000474409 ARHGEF40Q8TER5 1519 aa12.61□□□□□ -0.39
CNN3-205ENST00000474409 PTPRKQ15262 1439 aa12.6□□□□□ -0.39
CNN3-205ENST00000474409 DIP2CQ9Y2E4 1556 aa12.6□□□□□ -0.39
CNN3-205ENST00000474409 EIF2AK4Q9P2K8 1649 aaKnown RBP12.59□□□□□ -0.39
CNN3-205ENST00000474409 PCGF6Q9BYE7 350 aa12.59□□□□□ -0.39
CNN3-205ENST00000474409 RSPH4AQ5TD94 716 aa12.58□□□□□ -0.4
CNN3-205ENST00000474409 BCORL1Q5H9F3 1711 aa12.57□□□□□ -0.4
CNN3-205ENST00000474409 ROCK1Q13464 1354 aa12.56□□□□□ -0.4
CNN3-205ENST00000474409 ANKRD30AQ9BXX3 1397 aa12.56□□□□□ -0.4
CNN3-205ENST00000474409 TSPY4P0CV99 314 aa12.56□□□□□ -0.4
CNN3-205ENST00000474409 TSPY10P0CW01 314 aa12.56□□□□□ -0.4
CNN3-205ENST00000474409 MLH3Q9UHC1 1453 aa12.56□□□□□ -0.4
CNN3-205ENST00000474409 DUOX2Q9NRD8 1548 aa12.56□□□□□ -0.4
CNN3-205ENST00000474409 HFM1A2PYH4 1435 aa12.55□□□□□ -0.4
CNN3-205ENST00000474409 RTEL1-TNFRSF6BF6WH68 1400 aa12.55□□□□□ -0.4
CNN3-205ENST00000474409 CHIC2Q9UKJ5 165 aa12.55□□□□□ -0.4
CNN3-205ENST00000474409 MYT1LQ9UL68 1186 aa12.55□□□□□ -0.4
CNN3-205ENST00000474409 SPAG9O60271 1321 aaKnown RBP12.55□□□□□ -0.4
CNN3-205ENST00000474409 MAGI2Q86UL8 1455 aa12.54□□□□□ -0.4
CNN3-205ENST00000474409 DEPDC5O75140 1603 aa12.54□□□□□ -0.4
CNN3-205ENST00000474409 SIGLEC1Q9BZZ2 1709 aa12.54□□□□□ -0.4
CNN3-205ENST00000474409 COL17A1Q9UMD9 1497 aaPredicted RBP12.53□□□□□ -0.4
CNN3-205ENST00000474409 UNC13BO14795 1591 aa12.53□□□□□ -0.4
CNN3-205ENST00000474409 RAPGEF3O95398 923 aa12.53□□□□□ -0.4
CNN3-205ENST00000474409 AFAP1Q8N556 730 aa12.53□□□□□ -0.4
CNN3-205ENST00000474409 CEP152O94986 1710 aa12.53□□□□□ -0.4
CNN3-205ENST00000474409 KIF15Q9NS87 1388 aa12.53□□□□□ -0.4
CNN3-205ENST00000474409 NCOA1Q15788 1441 aa12.53□□□□□ -0.4
CNN3-205ENST00000474409 REREQ9P2R6 1566 aa12.52□□□□□ -0.4
CNN3-205ENST00000474409 RNF17Q9BXT8 1623 aaKnown RBP12.52□□□□□ -0.4
CNN3-205ENST00000474409 NAIPQ13075 1403 aa12.52□□□□□ -0.41
CNN3-205ENST00000474409 ERBINQ96RT1 1412 aa12.51□□□□□ -0.41
CNN3-205ENST00000474409 RRP7BPQ9NSQ0 103 aa12.5□□□□□ -0.41
CNN3-205ENST00000474409 ZC3H13Q5T200 1668 aaKnown RBP12.49□□□□□ -0.41
CNN3-205ENST00000474409 A2MP01023 1474 aa12.49□□□□□ -0.41
CNN3-205ENST00000474409 SETD5Q9C0A6 1442 aa12.49□□□□□ -0.41
CNN3-205ENST00000474409 YEATS2Q9ULM3 1422 aa12.49□□□□□ -0.41
CNN3-205ENST00000474409 FER1L4A9Z1Z3 1794 aa12.48□□□□□ -0.41
CNN3-205ENST00000474409 IQGAP3Q86VI3 1631 aa12.48□□□□□ -0.41
CNN3-205ENST00000474409 ANKRD50Q9ULJ7 1429 aa12.48□□□□□ -0.41
CNN3-205ENST00000474409 CFAP65Q6ZU64 1925 aaKnown RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 106.4 ms