RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 SUPT16HQ9Y5B9 1047 aaKnown RBP27■■□□□ 1.91
VIM-203ENST00000469543 RAPGEF6Q8TEU7 1601 aa26.99■■□□□ 1.91
VIM-203ENST00000469543 CFDP1Q9UEE9 299 aaPredicted RBP26.99■■□□□ 1.91
VIM-203ENST00000469543 SYNJ2O15056 1496 aa26.97■■□□□ 1.91
VIM-203ENST00000469543 ANP32CO43423 234 aa26.97■■□□□ 1.91
VIM-203ENST00000469543 GCC2Q8IWJ2 1684 aa26.96■■□□□ 1.91
VIM-203ENST00000469543 MAGI1Q96QZ7 1491 aaPredicted RBP26.95■■□□□ 1.9
VIM-203ENST00000469543 HSPA5P11021 654 aaKnown RBP26.94■■□□□ 1.9
VIM-203ENST00000469543 SLC4A1APQ9BWU0 796 aaKnown RBP26.93■■□□□ 1.9
VIM-203ENST00000469543 AKNAQ7Z591 1439 aa26.9■■□□□ 1.9
VIM-203ENST00000469543 WASHC2AQ641Q2 1341 aa26.88■■□□□ 1.89
VIM-203ENST00000469543 TROQ12816 1431 aaPredicted RBP26.88■■□□□ 1.89
VIM-203ENST00000469543 NBPF8Q3BBV2 869 aa26.86■■□□□ 1.89
VIM-203ENST00000469543 KIF14Q15058 1648 aa26.86■■□□□ 1.89
VIM-203ENST00000469543 C11orf95C9JLR9 678 aaPredicted RBP26.85■■□□□ 1.89
VIM-203ENST00000469543 GPATCH8Q9UKJ3 1502 aaKnown RBP26.84■■□□□ 1.89
VIM-203ENST00000469543 ROCK1Q13464 1354 aa26.84■■□□□ 1.89
VIM-203ENST00000469543 ANKRD30BQ9BXX2 1392 aa26.84■■□□□ 1.89
VIM-203ENST00000469543 DNMT1P26358 1616 aaKnown RBP26.83■■□□□ 1.89
VIM-203ENST00000469543 CARMIL2Q6F5E8 1435 aa26.82■■□□□ 1.88
VIM-203ENST00000469543 NUP160Q12769 1436 aa26.82■■□□□ 1.88
VIM-203ENST00000469543 CAMSAP2Q08AD1 1489 aa26.82■■□□□ 1.88
VIM-203ENST00000469543 PLEKHD1A6NEE1 506 aa26.81■■□□□ 1.88
VIM-203ENST00000469543 EIF4G2P78344 907 aaKnown RBP eCLIP26.81■■□□□ 1.88
VIM-203ENST00000469543 BCANQ96GW7 911 aa26.8■■□□□ 1.88
VIM-203ENST00000469543 CCER2I3L3R5 266 aa26.79■■□□□ 1.88
VIM-203ENST00000469543 NCOA1Q15788 1441 aa26.77■■□□□ 1.88
VIM-203ENST00000469543 ATP10BO94823 1461 aa26.73■■□□□ 1.87
VIM-203ENST00000469543 ZNF326Q5BKZ1 582 aaKnown RBP26.73■■□□□ 1.87
VIM-203ENST00000469543 HNRNPMP52272 730 aaKnown RBP eCLIP26.72■■□□□ 1.87
VIM-203ENST00000469543 RPRD2Q5VT52 1461 aaKnown RBP26.71■■□□□ 1.87
VIM-203ENST00000469543 PKD2Q13563 968 aa26.71■■□□□ 1.87
VIM-203ENST00000469543 FKBP8Q14318 412 aa26.7■■□□□ 1.86
VIM-203ENST00000469543 CCDC184Q52MB2 194 aa26.7■■□□□ 1.86
VIM-203ENST00000469543 PZPP20742 1482 aa26.69■■□□□ 1.86
VIM-203ENST00000469543 CNGB1Q14028 1251 aaPredicted RBP26.66■■□□□ 1.86
VIM-203ENST00000469543 TEX14Q8IWB6 1497 aa26.65■■□□□ 1.86
VIM-203ENST00000469543 PTPRGP23470 1445 aa26.62■■□□□ 1.85
VIM-203ENST00000469543 ABCA8O94911 1581 aa26.62■■□□□ 1.85
VIM-203ENST00000469543 ANKRD30AQ9BXX3 1397 aa26.61■■□□□ 1.85
VIM-203ENST00000469543 ANKRD50Q9ULJ7 1429 aa26.6■■□□□ 1.85
VIM-203ENST00000469543 HNRNPUQ00839 825 aaKnown RBP eCLIP26.6■■□□□ 1.85
VIM-203ENST00000469543 ITSN2Q9NZM3 1697 aa26.59■■□□□ 1.85
VIM-203ENST00000469543 ABCC10Q5T3U5 1492 aa26.58■■□□□ 1.85
VIM-203ENST00000469543 TSPY4P0CV99 314 aa26.58■■□□□ 1.85
VIM-203ENST00000469543 TSPY10P0CW01 314 aa26.58■■□□□ 1.85
VIM-203ENST00000469543 NUP155O75694 1391 aa26.58■■□□□ 1.85
VIM-203ENST00000469543 POLR3GLQ9BT43 218 aa26.57■■□□□ 1.84
VIM-203ENST00000469543 CCDC7Q96M83 1385 aa26.57■■□□□ 1.84
VIM-203ENST00000469543 ADCY10Q96PN6 1610 aa26.57■■□□□ 1.84
VIM-203ENST00000469543 CDC42BPAQ5VT25 1732 aa26.56■■□□□ 1.84
VIM-203ENST00000469543 KIF7Q2M1P5 1343 aa26.55■■□□□ 1.84
VIM-203ENST00000469543 C9orf84Q5VXU9 1444 aa26.53■■□□□ 1.84
VIM-203ENST00000469543 KIAA1107Q9UPP5 1409 aa26.53■■□□□ 1.84
VIM-203ENST00000469543 KDM2AQ9Y2K7 1162 aa26.52■■□□□ 1.84
VIM-203ENST00000469543 ADGRL2O95490 1459 aa26.52■■□□□ 1.84
VIM-203ENST00000469543 SPATA31E1Q6ZUB1 1445 aa26.51■■□□□ 1.83
VIM-203ENST00000469543 PRKRIP1Q9H875 184 aaPredicted RBP26.5■■□□□ 1.83
VIM-203ENST00000469543 CNTLNQ9NXG0 1405 aa26.5■■□□□ 1.83
VIM-203ENST00000469543 FAM9BQ8IZU0 186 aa26.49■■□□□ 1.83
VIM-203ENST00000469543 ADGBQ8N7X0 1667 aa26.49■■□□□ 1.83
VIM-203ENST00000469543 CROCC2H7BZ55 1655 aa26.48■■□□□ 1.83
VIM-203ENST00000469543 KIF15Q9NS87 1388 aa26.46■■□□□ 1.83
VIM-203ENST00000469543 IRX6P78412 446 aaPredicted RBP26.44■■□□□ 1.82
VIM-203ENST00000469543 ERCC6L2Q5T890 1561 aa26.43■■□□□ 1.82
VIM-203ENST00000469543 TSHZ2Q9NRE2 1034 aa26.43■■□□□ 1.82
VIM-203ENST00000469543 MBD5Q9P267 1494 aa26.42■■□□□ 1.82
VIM-203ENST00000469543 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.42■■□□□ 1.822e-9■■□□□ 12.6
VIM-203ENST00000469543 MRS2Q9HD23 443 aa26.42■■□□□ 1.82
VIM-203ENST00000469543 CHD1O14646 1710 aa26.4■■□□□ 1.82
VIM-203ENST00000469543 SENP3-EIF4A1A0A087X0R7 540 aa26.4■■□□□ 1.82
VIM-203ENST00000469543 NEFLP07196 543 aa26.4■■□□□ 1.82
VIM-203ENST00000469543 DCAF11Q8TEB1 546 aa26.4■■□□□ 1.82
VIM-203ENST00000469543 USP47Q96K76 1375 aa26.39■■□□□ 1.82
VIM-203ENST00000469543 RGL3Q3MIN7 710 aa26.35■■□□□ 1.81
VIM-203ENST00000469543 SAMD9LQ8IVG5 1584 aa26.35■■□□□ 1.81
VIM-203ENST00000469543 CARD11Q9BXL7 1154 aa26.34■■□□□ 1.81
VIM-203ENST00000469543 CDC42BPBQ9Y5S2 1711 aa26.34■■□□□ 1.81
VIM-203ENST00000469543 SHANK2Q9UPX8 1470 aa26.32■■□□□ 1.8
VIM-203ENST00000469543 BCORL1Q5H9F3 1711 aa26.31■■□□□ 1.8
VIM-203ENST00000469543 ST20-MTHFSA0A0A6YYL1 179 aa26.29■■□□□ 1.8
VIM-203ENST00000469543 TTC37Q6PGP7 1564 aa26.28■■□□□ 1.8
VIM-203ENST00000469543 CCDC141Q6ZP82 1450 aa26.28■■□□□ 1.8
VIM-203ENST00000469543 SYCP2Q9BX26 1530 aa26.28■■□□□ 1.8
VIM-203ENST00000469543 ARHGAP5Q13017 1502 aa26.27■■□□□ 1.8
VIM-203ENST00000469543 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.25■■□□□ 1.796e-7■□□□□ 9.4
VIM-203ENST00000469543 DHX29Q7Z478 1369 aaKnown RBP26.24■■□□□ 1.79
VIM-203ENST00000469543 ARHGEF5Q12774 1597 aa26.22■■□□□ 1.79
VIM-203ENST00000469543 PREX2Q70Z35 1606 aa26.22■■□□□ 1.79
VIM-203ENST00000469543 NBPF1Q3BBV0 1214 aa26.21■■□□□ 1.79
VIM-203ENST00000469543 FAM135AQ9P2D6 1515 aa26.21■■□□□ 1.79
VIM-203ENST00000469543 RSPH4AQ5TD94 716 aa26.2■■□□□ 1.78
VIM-203ENST00000469543 KDM5CP41229 1560 aa26.19■■□□□ 1.78
VIM-203ENST00000469543 PLEKHH2Q8IVE3 1493 aa26.18■■□□□ 1.78
VIM-203ENST00000469543 ARHGEF12Q9NZN5 1544 aa26.18■■□□□ 1.78
VIM-203ENST00000469543 UHRF1BP1Q6BDS2 1440 aa26.17■■□□□ 1.78
VIM-203ENST00000469543 SHROOM2Q13796 1616 aa26.17■■□□□ 1.78
VIM-203ENST00000469543 KDM5DQ9BY66 1539 aa26.16■■□□□ 1.78
VIM-203ENST00000469543 ROCK2O75116 1388 aaKnown RBP26.14■■□□□ 1.78
VIM-203ENST00000469543 ABCC2Q92887 1545 aa26.14■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms