RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 LRRC9Q6ZRR7 1453 aa35.93■■■■□ 3.34
CCDC28B-203ENST00000461819 AKNAQ7Z591 1439 aa35.93■■■■□ 3.34
CCDC28B-203ENST00000461819 EFCAB2Q5VUJ9 269 aa35.89■■■■□ 3.34
CCDC28B-203ENST00000461819 CCNB3Q8WWL7 1395 aa35.88■■■■□ 3.33
CCDC28B-203ENST00000461819 ITSN2Q9NZM3 1697 aa35.88■■■■□ 3.33
CCDC28B-203ENST00000461819 ADGRL1O94910 1474 aa35.86■■■■□ 3.33
CCDC28B-203ENST00000461819 GPATCH8Q9UKJ3 1502 aaKnown RBP35.84■■■■□ 3.33
CCDC28B-203ENST00000461819 NCOA2Q15596 1464 aa35.84■■■■□ 3.33
CCDC28B-203ENST00000461819 RICTORQ6R327 1708 aa35.83■■■■□ 3.33
CCDC28B-203ENST00000461819 DENND4BO75064 1496 aaPredicted RBP35.82■■■■□ 3.32
CCDC28B-203ENST00000461819 KANK4Q5T7N3 995 aaPredicted RBP35.81■■■■□ 3.32
CCDC28B-203ENST00000461819 FRMPD1Q5SYB0 1578 aa35.81■■■■□ 3.32
CCDC28B-203ENST00000461819 SCAPERQ9BY12 1400 aa35.77■■■■□ 3.32
CCDC28B-203ENST00000461819 RAPGEF3O95398 923 aa35.77■■■■□ 3.32
CCDC28B-203ENST00000461819 ABCC1P33527 1531 aa35.73■■■■□ 3.31
CCDC28B-203ENST00000461819 SAMD9LQ8IVG5 1584 aa35.73■■■■□ 3.31
CCDC28B-203ENST00000461819 CFDP1Q9UEE9 299 aaPredicted RBP35.73■■■■□ 3.31
CCDC28B-203ENST00000461819 ZNF777Q9ULD5 760 aaPredicted RBP35.72■■■■□ 3.31
CCDC28B-203ENST00000461819 POGZQ7Z3K3 1410 aa35.71■■■■□ 3.31
CCDC28B-203ENST00000461819 ZMYM4Q5VZL5 1548 aa35.66■■■■□ 3.3
CCDC28B-203ENST00000461819 ZNF518AQ6AHZ1 1483 aa35.65■■■■□ 3.3
CCDC28B-203ENST00000461819 SYCP2Q9BX26 1530 aa35.63■■■■□ 3.29
CCDC28B-203ENST00000461819 PLEKHH2Q8IVE3 1493 aa35.62■■■■□ 3.29
CCDC28B-203ENST00000461819 ARHGEF12Q9NZN5 1544 aa35.61■■■■□ 3.29
CCDC28B-203ENST00000461819 KDM5CP41229 1560 aa35.58■■■■□ 3.29
CCDC28B-203ENST00000461819 ARHGEF40Q8TER5 1519 aa35.57■■■■□ 3.29
CCDC28B-203ENST00000461819 MYOM3Q5VTT5 1437 aa35.57■■■■□ 3.28
CCDC28B-203ENST00000461819 ZFYVE16Q7Z3T8 1539 aa35.56■■■■□ 3.28
CCDC28B-203ENST00000461819 TRAPPC8Q9Y2L5 1435 aa35.55■■■■□ 3.28
CCDC28B-203ENST00000461819 CAMSAP2Q08AD1 1489 aa35.54■■■■□ 3.28
CCDC28B-203ENST00000461819 KIAA1107Q9UPP5 1409 aa35.54■■■■□ 3.28
CCDC28B-203ENST00000461819 HECW2Q9P2P5 1572 aa35.54■■■■□ 3.28
CCDC28B-203ENST00000461819 MAGI2Q86UL8 1455 aa35.54■■■■□ 3.28
CCDC28B-203ENST00000461819 AFAP1Q8N556 730 aa35.53■■■■□ 3.28
CCDC28B-203ENST00000461819 ZNF644Q9H582 1327 aaPredicted RBP35.53■■■■□ 3.28
CCDC28B-203ENST00000461819 HNRNPMP52272 730 aaKnown RBP eCLIP35.5■■■■□ 3.27
CCDC28B-203ENST00000461819 MIA2Q96PC5 1412 aa35.48■■■■□ 3.27
CCDC28B-203ENST00000461819 MYT1LQ9UL68 1186 aa35.47■■■■□ 3.27
CCDC28B-203ENST00000461819 YEATS2Q9ULM3 1422 aa35.47■■■■□ 3.27
CCDC28B-203ENST00000461819 MLH3Q9UHC1 1453 aa35.42■■■■□ 3.26
CCDC28B-203ENST00000461819 PTPN23Q9H3S7 1636 aa35.41■■■■□ 3.26
CCDC28B-203ENST00000461819 MBD5Q9P267 1494 aa35.41■■■■□ 3.26
CCDC28B-203ENST00000461819 KIDINS220Q9ULH0 1771 aa35.41■■■■□ 3.26
CCDC28B-203ENST00000461819 ABCA6Q8N139 1617 aa35.39■■■■□ 3.26
CCDC28B-203ENST00000461819 PPARGC1BQ86YN6 1023 aaKnown RBP35.38■■■■□ 3.25
CCDC28B-203ENST00000461819 FGD6Q6ZV73 1430 aa35.38■■■■□ 3.25
CCDC28B-203ENST00000461819 ARHGEF5Q12774 1597 aa35.38■■■■□ 3.25
CCDC28B-203ENST00000461819 DIP2CQ9Y2E4 1556 aa35.38■■■■□ 3.25
CCDC28B-203ENST00000461819 CCDC141Q6ZP82 1450 aa35.37■■■■□ 3.25
CCDC28B-203ENST00000461819 INO80Q9ULG1 1556 aaPredicted RBP35.37■■■■□ 3.25
CCDC28B-203ENST00000461819 SPAG9O60271 1321 aaKnown RBP35.36■■■■□ 3.25
CCDC28B-203ENST00000461819 ATP7AQ04656 1500 aa35.36■■■■□ 3.25
CCDC28B-203ENST00000461819 ATP10AO60312 1499 aa35.34■■■■□ 3.25
CCDC28B-203ENST00000461819 C9orf84Q5VXU9 1444 aa35.32■■■■□ 3.25
CCDC28B-203ENST00000461819 ARID4BQ4LE39 1312 aaPredicted RBP35.31■■■■□ 3.24
CCDC28B-203ENST00000461819 SIGLEC1Q9BZZ2 1709 aa35.3■■■■□ 3.24
CCDC28B-203ENST00000461819 RSPH4AQ5TD94 716 aa35.29■■■■□ 3.24
CCDC28B-203ENST00000461819 TCOF1Q13428 1488 aaKnown RBP35.28■■■■□ 3.24
CCDC28B-203ENST00000461819 REREQ9P2R6 1566 aa35.25■■■■□ 3.23
CCDC28B-203ENST00000461819 BCORL1Q5H9F3 1711 aa35.24■■■■□ 3.23
CCDC28B-203ENST00000461819 CROCC2H7BZ55 1655 aa35.24■■■■□ 3.23
CCDC28B-203ENST00000461819 ADGBQ8N7X0 1667 aa35.22■■■■□ 3.23
CCDC28B-203ENST00000461819 RTEL1-TNFRSF6BF6WH68 1400 aa35.21■■■■□ 3.23
CCDC28B-203ENST00000461819 KDM4FA0A1W2PPD8 638 aa35.2■■■■□ 3.23
CCDC28B-203ENST00000461819 DNMT1P26358 1616 aaKnown RBP35.2■■■■□ 3.23
CCDC28B-203ENST00000461819 TSPY4P0CV99 314 aa35.19■■■■□ 3.22
CCDC28B-203ENST00000461819 TSPY10P0CW01 314 aa35.19■■■■□ 3.22
CCDC28B-203ENST00000461819 MAST1Q9Y2H9 1570 aa35.18■■■■□ 3.22
CCDC28B-203ENST00000461819 FAM50AQ14320 339 aaKnown RBP35.16■■■■□ 3.22
CCDC28B-203ENST00000461819 ADAMTSL3P82987 1691 aa35.14■■■■□ 3.22
CCDC28B-203ENST00000461819 DAPK1P53355 1430 aa35.13■■■■□ 3.21
CCDC28B-203ENST00000461819 A2MP01023 1474 aa35.12■■■■□ 3.21
CCDC28B-203ENST00000461819 SHANK2Q9UPX8 1470 aa35.11■■■■□ 3.21
CCDC28B-203ENST00000461819 ABCC5O15440 1437 aa35.11■■■■□ 3.21
CCDC28B-203ENST00000461819 AGLP35573 1532 aa35.11■■■■□ 3.21
CCDC28B-203ENST00000461819 PLXNC1O60486 1568 aa35.1■■■■□ 3.21
CCDC28B-203ENST00000461819 MADDQ8WXG6 1647 aa35.09■■■■□ 3.21
CCDC28B-203ENST00000461819 AEBP2Q6ZN18 517 aaPredicted RBP35.08■■■■□ 3.21
CCDC28B-203ENST00000461819 MLECQ14165 292 aa35.07■■■■□ 3.2
CCDC28B-203ENST00000461819 FER1L4A9Z1Z3 1794 aa35.07■■■■□ 3.2
CCDC28B-203ENST00000461819 RIMS1Q86UR5 1692 aaKnown RBP35.03■■■■□ 3.2
CCDC28B-203ENST00000461819 DHX29Q7Z478 1369 aaKnown RBP34.99■■■■□ 3.19
CCDC28B-203ENST00000461819 RRBP1Q9P2E9 1410 aaKnown RBP34.96■■■■□ 3.19
CCDC28B-203ENST00000461819 CHIC2Q9UKJ5 165 aa34.94■■■■□ 3.18
CCDC28B-203ENST00000461819 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP34.94■■■■□ 3.18
CCDC28B-203ENST00000461819 DUOX2Q9NRD8 1548 aa34.91■■■■□ 3.18
CCDC28B-203ENST00000461819 ANKRD30AQ9BXX3 1397 aa34.91■■■■□ 3.18
CCDC28B-203ENST00000461819 KIF15Q9NS87 1388 aa34.91■■■■□ 3.18
CCDC28B-203ENST00000461819 PTPRMP28827 1452 aa34.9■■■■□ 3.18
CCDC28B-203ENST00000461819 EIF2AK4Q9P2K8 1649 aaKnown RBP34.88■■■■□ 3.17
CCDC28B-203ENST00000461819 ADGRL2O95490 1459 aa34.88■■■■□ 3.17
CCDC28B-203ENST00000461819 RRP7BPQ9NSQ0 103 aa34.87■■■■□ 3.17
CCDC28B-203ENST00000461819 ITGAEP38570 1179 aa34.86■■■■□ 3.17
CCDC28B-203ENST00000461819 ESF1Q9H501 851 aaKnown RBP34.85■■■■□ 3.17
CCDC28B-203ENST00000461819 KIF3BO15066 747 aa34.84■■■■□ 3.17
CCDC28B-203ENST00000461819 GGT6Q6P531 493 aa34.84■■■■□ 3.17
CCDC28B-203ENST00000461819 NCOA1Q15788 1441 aa34.83■■■■□ 3.17
CCDC28B-203ENST00000461819 PTPRKQ15262 1439 aa34.82■■■■□ 3.17
CCDC28B-203ENST00000461819 ERBINQ96RT1 1412 aa34.81■■■■□ 3.16
CCDC28B-203ENST00000461819 CLTCQ00610 1675 aaKnown RBP34.8■■■■□ 3.16
Retrieved 100 of 20,778 RNA–protein pairs in 128.9 ms