RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 MAGI2Q86UL8 1455 aa20.46■□□□□ 0.87
HDAC4-207ENST00000461113 FER1L4A9Z1Z3 1794 aa20.44■□□□□ 0.86
HDAC4-207ENST00000461113 ARHGEF12Q9NZN5 1544 aa20.43■□□□□ 0.86
HDAC4-207ENST00000461113 PREX1Q8TCU6 1659 aa20.42■□□□□ 0.86
HDAC4-207ENST00000461113 UHRF1BP1Q6BDS2 1440 aa20.41■□□□□ 0.86
HDAC4-207ENST00000461113 HECW1Q76N89 1606 aa20.41■□□□□ 0.86
HDAC4-207ENST00000461113 STRCQ7RTU9 1775 aa20.41■□□□□ 0.86
HDAC4-207ENST00000461113 PTPRTO14522 1441 aa20.4■□□□□ 0.86
HDAC4-207ENST00000461113 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.4■□□□□ 0.86
HDAC4-207ENST00000461113 CFAP74Q9C0B2 1584 aa20.4■□□□□ 0.86
HDAC4-207ENST00000461113 ATP10AO60312 1499 aa20.39■□□□□ 0.85
HDAC4-207ENST00000461113 SCAPERQ9BY12 1400 aa20.39■□□□□ 0.85
HDAC4-207ENST00000461113 SAMD9Q5K651 1589 aa20.38■□□□□ 0.85
HDAC4-207ENST00000461113 UBTFP17480 764 aaKnown RBP20.38■□□□□ 0.85
HDAC4-207ENST00000461113 RANGAP1P46060 587 aaPredicted RBP20.37■□□□□ 0.85
HDAC4-207ENST00000461113 C9orf84Q5VXU9 1444 aa20.36■□□□□ 0.85
HDAC4-207ENST00000461113 EHMT2Q96KQ7 1210 aa20.36■□□□□ 0.85
HDAC4-207ENST00000461113 LTBP4Q8N2S1 1624 aa20.34■□□□□ 0.85
HDAC4-207ENST00000461113 IQSEC2Q5JU85 1478 aa20.3■□□□□ 0.84
HDAC4-207ENST00000461113 PLCH2O75038 1416 aa20.29■□□□□ 0.84
HDAC4-207ENST00000461113 UBAP1LF5GYI3 381 aa20.26■□□□□ 0.83
HDAC4-207ENST00000461113 EFCAB2Q5VUJ9 269 aa20.26■□□□□ 0.83
HDAC4-207ENST00000461113 MYT1LQ9UL68 1186 aa20.25■□□□□ 0.83
HDAC4-207ENST00000461113 NCOA1Q15788 1441 aa20.23■□□□□ 0.83
HDAC4-207ENST00000461113 AFAP1Q8N556 730 aa20.23■□□□□ 0.83
HDAC4-207ENST00000461113 ESF1Q9H501 851 aaKnown RBP20.22■□□□□ 0.83
HDAC4-207ENST00000461113 TRAPPC8Q9Y2L5 1435 aa20.21■□□□□ 0.83
HDAC4-207ENST00000461113 CDK13Q14004 1512 aaKnown RBP20.19■□□□□ 0.82
HDAC4-207ENST00000461113 ZNF335Q9H4Z2 1342 aaPredicted RBP20.19■□□□□ 0.82
HDAC4-207ENST00000461113 SETD1BQ9UPS6 1966 aaKnown RBP20.19■□□□□ 0.82
HDAC4-207ENST00000461113 ZNF518AQ6AHZ1 1483 aa20.18■□□□□ 0.82
HDAC4-207ENST00000461113 NCKAP5LQ9HCH0 1330 aa20.16■□□□□ 0.82
HDAC4-207ENST00000461113 C3P01024 1663 aa20.13■□□□□ 0.81
HDAC4-207ENST00000461113 ATP1B4Q9UN42 357 aaPredicted RBP20.12■□□□□ 0.81
HDAC4-207ENST00000461113 DIP2CQ9Y2E4 1556 aa20.12■□□□□ 0.81
HDAC4-207ENST00000461113 CAMSAP1Q5T5Y3 1602 aa20.11■□□□□ 0.81
HDAC4-207ENST00000461113 KDM5CP41229 1560 aa20.11■□□□□ 0.81
HDAC4-207ENST00000461113 HSPA1LP34931 641 aa20.09■□□□□ 0.81
HDAC4-207ENST00000461113 REREQ9P2R6 1566 aa20.08■□□□□ 0.81
HDAC4-207ENST00000461113 SCAF1Q9H7N4 1312 aaKnown RBP20.08■□□□□ 0.81
HDAC4-207ENST00000461113 ARHGAP5Q13017 1502 aa20.07■□□□□ 0.8
HDAC4-207ENST00000461113 CNTLNQ9NXG0 1405 aa20.07■□□□□ 0.8
HDAC4-207ENST00000461113 AGLP35573 1532 aa20.07■□□□□ 0.8
HDAC4-207ENST00000461113 MLH3Q9UHC1 1453 aa20.06■□□□□ 0.8
HDAC4-207ENST00000461113 CDK11AQ9UQ88 783 aaPredicted RBP20.06■□□□□ 0.8
HDAC4-207ENST00000461113 MED1Q15648 1581 aaPredicted RBP20.05■□□□□ 0.8
HDAC4-207ENST00000461113 LOC105371045A0A1W2PR82 267 aa20.05■□□□□ 0.8
HDAC4-207ENST00000461113 PIP4K2BP78356 416 aa20.05■□□□□ 0.8
HDAC4-207ENST00000461113 ABCA6Q8N139 1617 aa20.05■□□□□ 0.8
HDAC4-207ENST00000461113 MYO5CQ9NQX4 1742 aa20.05■□□□□ 0.8
HDAC4-207ENST00000461113 PKD2Q13563 968 aa20.04■□□□□ 0.8
HDAC4-207ENST00000461113 NPATQ14207 1427 aa20.03■□□□□ 0.8
HDAC4-207ENST00000461113 ZMYM3Q14202 1370 aa20.01■□□□□ 0.79
HDAC4-207ENST00000461113 PHF23Q9BUL5 403 aaPredicted RBP20.01■□□□□ 0.79
HDAC4-207ENST00000461113 KIF14Q15058 1648 aa20.01■□□□□ 0.79
HDAC4-207ENST00000461113 PPP6R1Q9UPN7 881 aa20■□□□□ 0.79
HDAC4-207ENST00000461113 TOM1O60784 492 aa19.98■□□□□ 0.79
HDAC4-207ENST00000461113 TROQ12816 1431 aaPredicted RBP19.98■□□□□ 0.79
HDAC4-207ENST00000461113 CLIP1P30622 1438 aa19.97■□□□□ 0.79
HDAC4-207ENST00000461113 PLA2R1Q13018 1463 aa19.97■□□□□ 0.79
HDAC4-207ENST00000461113 TCOF1Q13428 1488 aaKnown RBP19.96■□□□□ 0.79
HDAC4-207ENST00000461113 FMN1Q68DA7 1419 aa19.93■□□□□ 0.78
HDAC4-207ENST00000461113 ARHGAP35Q9NRY4 1499 aa19.93■□□□□ 0.78
HDAC4-207ENST00000461113 CEP162Q5TB80 1403 aa19.9■□□□□ 0.78
HDAC4-207ENST00000461113 ABCC1P33527 1531 aa19.9■□□□□ 0.78
HDAC4-207ENST00000461113 PTPRKQ15262 1439 aa19.89■□□□□ 0.77
HDAC4-207ENST00000461113 MROH2AA6NES4 1674 aa19.88■□□□□ 0.77
HDAC4-207ENST00000461113 CEP170BQ9Y4F5 1589 aaPredicted RBP19.88■□□□□ 0.77
HDAC4-207ENST00000461113 KIDINS220Q9ULH0 1771 aa19.88■□□□□ 0.77
HDAC4-207ENST00000461113 MYO3AQ8NEV4 1616 aa19.87■□□□□ 0.77
HDAC4-207ENST00000461113 CDC42BPBQ9Y5S2 1711 aa19.85■□□□□ 0.77
HDAC4-207ENST00000461113 SENP3Q9H4L4 574 aaPredicted RBP19.85■□□□□ 0.77
HDAC4-207ENST00000461113 ZNF142P52746 1687 aaPredicted RBP19.84■□□□□ 0.77
HDAC4-207ENST00000461113 SPAG9O60271 1321 aaKnown RBP19.84■□□□□ 0.77
HDAC4-207ENST00000461113 GGT6Q6P531 493 aa19.84■□□□□ 0.77
HDAC4-207ENST00000461113 CPS1P31327 1500 aa19.83■□□□□ 0.77
HDAC4-207ENST00000461113 ZNF777Q9ULD5 760 aaPredicted RBP19.83■□□□□ 0.77
HDAC4-207ENST00000461113 SHANK2Q9UPX8 1470 aa19.83■□□□□ 0.76
HDAC4-207ENST00000461113 ITSN2Q9NZM3 1697 aa19.83■□□□□ 0.76
HDAC4-207ENST00000461113 SAMD9LQ8IVG5 1584 aa19.81■□□□□ 0.76
HDAC4-207ENST00000461113 PREX2Q70Z35 1606 aa19.8■□□□□ 0.76
HDAC4-207ENST00000461113 CLTCQ00610 1675 aaKnown RBP19.8■□□□□ 0.76
HDAC4-207ENST00000461113 A2ML1A8K2U0 1454 aa19.79■□□□□ 0.76
HDAC4-207ENST00000461113 HNRNPMP52272 730 aaKnown RBP eCLIP19.79■□□□□ 0.765e-6■■■■■ 26.8
HDAC4-207ENST00000461113 SUPT6HQ7KZ85 1726 aaKnown RBP19.77■□□□□ 0.76
HDAC4-207ENST00000461113 A2MP01023 1474 aa19.76■□□□□ 0.75
HDAC4-207ENST00000461113 RGS17Q9UGC6 210 aaPredicted RBP19.76■□□□□ 0.75
HDAC4-207ENST00000461113 DNMT1P26358 1616 aaKnown RBP19.75■□□□□ 0.75
HDAC4-207ENST00000461113 CASKIN1Q8WXD9 1431 aa19.75■□□□□ 0.75
HDAC4-207ENST00000461113 ALKQ9UM73 1620 aa19.74■□□□□ 0.75
HDAC4-207ENST00000461113 SYCP2Q9BX26 1530 aa19.73■□□□□ 0.75
HDAC4-207ENST00000461113 ANKLE2Q86XL3 938 aa19.73■□□□□ 0.75
HDAC4-207ENST00000461113 NEURL4Q96JN8 1562 aa19.73■□□□□ 0.75
HDAC4-207ENST00000461113 ATP7AQ04656 1500 aa19.71■□□□□ 0.75
HDAC4-207ENST00000461113 PLXNC1O60486 1568 aa19.71■□□□□ 0.75
HDAC4-207ENST00000461113 FBXO31Q5XUX0 539 aaPredicted RBP19.71■□□□□ 0.75
HDAC4-207ENST00000461113 VWDEQ8N2E2 1590 aa19.7■□□□□ 0.74
HDAC4-207ENST00000461113 TNRQ92752 1358 aa19.7■□□□□ 0.74
HDAC4-207ENST00000461113 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.7■□□□□ 0.74
HDAC4-207ENST00000461113 FYCO1Q9BQS8 1478 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms