RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	ABCA9	Q8IUA7	1624 aa		14.31	□□□□□ -0.12
RFX3-209	ENST00000451859	MAGI3	Q5TCQ9	1506 aa		14.3	□□□□□ -0.12
RFX3-209	ENST00000451859	SP7	Q8TDD2	431 aa	Predicted RBP	14.28	□□□□□ -0.12
RFX3-209	ENST00000451859	AKT1S1	Q96B36	256 aa		14.28	□□□□□ -0.12
RFX3-209	ENST00000451859	ATF5	Q9Y2D1	282 aa	Predicted RBP	14.27	□□□□□ -0.13
RFX3-209	ENST00000451859	CDK13	Q14004	1512 aa	Known RBP	14.26	□□□□□ -0.13
RFX3-209	ENST00000451859	ARHGAP35	Q9NRY4	1499 aa		14.25	□□□□□ -0.13
RFX3-209	ENST00000451859	LRRIQ1	Q96JM4	1722 aa		14.25	□□□□□ -0.13
RFX3-209	ENST00000451859	ATP1B4	Q9UN42	357 aa	Predicted RBP	14.25	□□□□□ -0.13
RFX3-209	ENST00000451859	HECW1	Q76N89	1606 aa		14.25	□□□□□ -0.13
RFX3-209	ENST00000451859	KDM4F	A0A1W2PPD8	638 aa		14.23	□□□□□ -0.13
RFX3-209	ENST00000451859	TTC37	Q6PGP7	1564 aa		14.22	□□□□□ -0.13
RFX3-209	ENST00000451859	ADGRL1	O94910	1474 aa		14.22	□□□□□ -0.13
RFX3-209	ENST00000451859	PLEKHD1	A6NEE1	506 aa		14.2	□□□□□ -0.14
RFX3-209	ENST00000451859	FMN1	Q68DA7	1419 aa		14.2	□□□□□ -0.14
RFX3-209	ENST00000451859	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	14.19	□□□□□ -0.14
RFX3-209	ENST00000451859	PCF11	O94913	1555 aa	Known RBP	14.18	□□□□□ -0.14
RFX3-209	ENST00000451859	ARAP3	Q8WWN8	1544 aa		14.18	□□□□□ -0.14
RFX3-209	ENST00000451859	MYO5C	Q9NQX4	1742 aa		14.18	□□□□□ -0.14
RFX3-209	ENST00000451859	CFAP74	Q9C0B2	1584 aa		14.17	□□□□□ -0.14
RFX3-209	ENST00000451859	REM2	Q8IYK8	340 aa	Predicted RBP	14.17	□□□□□ -0.14
RFX3-209	ENST00000451859	KIF14	Q15058	1648 aa		14.16	□□□□□ -0.14
RFX3-209	ENST00000451859	PIP4P2	Q8N4L2	257 aa		14.16	□□□□□ -0.14
RFX3-209	ENST00000451859	NEO1	Q92859	1461 aa		14.16	□□□□□ -0.14
RFX3-209	ENST00000451859	RICTOR	Q6R327	1708 aa		14.15	□□□□□ -0.14
RFX3-209	ENST00000451859	FRMPD1	Q5SYB0	1578 aa		14.15	□□□□□ -0.14
RFX3-209	ENST00000451859	ZBTB12	Q9Y330	459 aa	Predicted RBP	14.15	□□□□□ -0.14
RFX3-209	ENST00000451859	FANCA	O15360	1455 aa		14.13	□□□□□ -0.15
RFX3-209	ENST00000451859	RAPGEF3	O95398	923 aa		14.13	□□□□□ -0.15
RFX3-209	ENST00000451859	PHLDB1	Q86UU1	1377 aa		14.11	□□□□□ -0.15
RFX3-209	ENST00000451859	CLIP1	P30622	1438 aa		14.1	□□□□□ -0.15
RFX3-209	ENST00000451859	FOXD4L1	Q9NU39	408 aa		14.1	□□□□□ -0.15
RFX3-209	ENST00000451859	AKNA	Q7Z591	1439 aa		14.09	□□□□□ -0.15
RFX3-209	ENST00000451859	DENND4B	O75064	1496 aa	Predicted RBP	14.08	□□□□□ -0.16
RFX3-209	ENST00000451859	CASKIN1	Q8WXD9	1431 aa		14.07	□□□□□ -0.16
RFX3-209	ENST00000451859	CDC42BPB	Q9Y5S2	1711 aa		14.07	□□□□□ -0.16
RFX3-209	ENST00000451859	ARHGEF40	Q8TER5	1519 aa		14.07	□□□□□ -0.16
RFX3-209	ENST00000451859	CDK11A	Q9UQ88	783 aa	Predicted RBP	14.07	□□□□□ -0.16
RFX3-209	ENST00000451859	TRO	Q12816	1431 aa	Predicted RBP	14.07	□□□□□ -0.16
RFX3-209	ENST00000451859	CCDC18	Q5T9S5	1454 aa		14.06	□□□□□ -0.16
RFX3-209	ENST00000451859	ARHGAP5	Q13017	1502 aa		14.05	□□□□□ -0.16
RFX3-209	ENST00000451859	CDC42BPA	Q5VT25	1732 aa		14.05	□□□□□ -0.16
RFX3-209	ENST00000451859	FYCO1	Q9BQS8	1478 aa		14.05	□□□□□ -0.16
RFX3-209	ENST00000451859	BCORL1	Q5H9F3	1711 aa		14.04	□□□□□ -0.16
RFX3-209	ENST00000451859	PITPNM1	O00562	1244 aa		14.04	□□□□□ -0.16
RFX3-209	ENST00000451859	PLCH2	O75038	1416 aa		14.04	□□□□□ -0.16
RFX3-209	ENST00000451859	PREX2	Q70Z35	1606 aa		14.04	□□□□□ -0.16
RFX3-209	ENST00000451859	ADAMTSL3	P82987	1691 aa		14.04	□□□□□ -0.16
RFX3-209	ENST00000451859	ARID4B	Q4LE39	1312 aa	Predicted RBP	14.03	□□□□□ -0.16
RFX3-209	ENST00000451859	ZMYM4	Q5VZL5	1548 aa		14.03	□□□□□ -0.16
RFX3-209	ENST00000451859	ZFYVE16	Q7Z3T8	1539 aa		14.03	□□□□□ -0.16
RFX3-209	ENST00000451859	MADD	Q8WXG6	1647 aa		14.03	□□□□□ -0.16
RFX3-209	ENST00000451859	SIGLEC1	Q9BZZ2	1709 aa		14.03	□□□□□ -0.16
RFX3-209	ENST00000451859	FXR2	P51116	673 aa	Known RBP eCLIP	14.02	□□□□□ -0.17
RFX3-209	ENST00000451859	RIMS1	Q86UR5	1692 aa	Known RBP	14.01	□□□□□ -0.17
RFX3-209	ENST00000451859	SCAPER	Q9BY12	1400 aa		14.01	□□□□□ -0.17
RFX3-209	ENST00000451859	SLC4A1AP	Q9BWU0	796 aa	Known RBP	14.01	□□□□□ -0.17
RFX3-209	ENST00000451859	HECW2	Q9P2P5	1572 aa		14	□□□□□ -0.17
RFX3-209	ENST00000451859	POGZ	Q7Z3K3	1410 aa		13.99	□□□□□ -0.17
RFX3-209	ENST00000451859	YEATS2	Q9ULM3	1422 aa		13.99	□□□□□ -0.17
RFX3-209	ENST00000451859	ITSN2	Q9NZM3	1697 aa		13.99	□□□□□ -0.17
RFX3-209	ENST00000451859	EFCAB2	Q5VUJ9	269 aa		13.99	□□□□□ -0.17
RFX3-209	ENST00000451859	CEP162	Q5TB80	1403 aa		13.98	□□□□□ -0.17
RFX3-209	ENST00000451859	FER1L4	A9Z1Z3	1794 aa		13.97	□□□□□ -0.17
RFX3-209	ENST00000451859	HAX1	O00165	279 aa		13.96	□□□□□ -0.17
RFX3-209	ENST00000451859	ABCC1	P33527	1531 aa		13.95	□□□□□ -0.18
RFX3-209	ENST00000451859	PTPRM	P28827	1452 aa		13.94	□□□□□ -0.18
RFX3-209	ENST00000451859	MAGI2	Q86UL8	1455 aa		13.94	□□□□□ -0.18
RFX3-209	ENST00000451859	MYT1L	Q9UL68	1186 aa		13.94	□□□□□ -0.18
RFX3-209	ENST00000451859	ZNF518A	Q6AHZ1	1483 aa		13.93	□□□□□ -0.18
RFX3-209	ENST00000451859	KDM5C	P41229	1560 aa		13.93	□□□□□ -0.18
RFX3-209	ENST00000451859	LOC105371045	A0A1W2PR82	267 aa		13.92	□□□□□ -0.18
RFX3-209	ENST00000451859	ABCA6	Q8N139	1617 aa		13.92	□□□□□ -0.18
RFX3-209	ENST00000451859	SAMD9L	Q8IVG5	1584 aa		13.92	□□□□□ -0.18
RFX3-209	ENST00000451859	MLEC	Q14165	292 aa		13.91	□□□□□ -0.18
RFX3-209	ENST00000451859	ZNF777	Q9ULD5	760 aa	Predicted RBP	13.91	□□□□□ -0.18
RFX3-209	ENST00000451859	MTUS2	Q5JR59	1369 aa		13.91	□□□□□ -0.18
RFX3-209	ENST00000451859	DIP2C	Q9Y2E4	1556 aa		13.91	□□□□□ -0.18
RFX3-209	ENST00000451859	ARHGEF12	Q9NZN5	1544 aa		13.9	□□□□□ -0.18
RFX3-209	ENST00000451859	AFAP1	Q8N556	730 aa		13.9	□□□□□ -0.18
RFX3-209	ENST00000451859	EHBP1L1	Q8N3D4	1523 aa		13.9	□□□□□ -0.19
RFX3-209	ENST00000451859	SYCP2	Q9BX26	1530 aa		13.9	□□□□□ -0.19
RFX3-209	ENST00000451859	C9orf84	Q5VXU9	1444 aa		13.9	□□□□□ -0.19
RFX3-209	ENST00000451859	KIDINS220	Q9ULH0	1771 aa		13.89	□□□□□ -0.19
RFX3-209	ENST00000451859	ATP10A	O60312	1499 aa		13.89	□□□□□ -0.19
RFX3-209	ENST00000451859	TRAPPC8	Q9Y2L5	1435 aa		13.89	□□□□□ -0.19
RFX3-209	ENST00000451859	GPATCH8	Q9UKJ3	1502 aa	Known RBP	13.88	□□□□□ -0.19
RFX3-209	ENST00000451859	EVX2	Q03828	476 aa		13.87	□□□□□ -0.19
RFX3-209	ENST00000451859	TIAM1	Q13009	1591 aa		13.87	□□□□□ -0.19
RFX3-209	ENST00000451859	CCNB3	Q8WWL7	1395 aa		13.86	□□□□□ -0.19
RFX3-209	ENST00000451859	SUPT6H	Q7KZ85	1726 aa	Known RBP	13.86	□□□□□ -0.19
RFX3-209	ENST00000451859	ZBTB22	O15209	634 aa		13.84	□□□□□ -0.19
RFX3-209	ENST00000451859	MLH3	Q9UHC1	1453 aa		13.83	□□□□□ -0.2
RFX3-209	ENST00000451859	CFDP1	Q9UEE9	299 aa	Predicted RBP	13.82	□□□□□ -0.2
RFX3-209	ENST00000451859	RERE	Q9P2R6	1566 aa		13.82	□□□□□ -0.2
RFX3-209	ENST00000451859	HNRNPM	P52272	730 aa	Known RBP eCLIP	13.81	□□□□□ -0.2
RFX3-209	ENST00000451859	VPS8	Q8N3P4	1428 aa		13.81	□□□□□ -0.2
RFX3-209	ENST00000451859	ATP7A	Q04656	1500 aa		13.8	□□□□□ -0.2
RFX3-209	ENST00000451859	INO80	Q9ULG1	1556 aa	Predicted RBP	13.8	□□□□□ -0.2
RFX3-209	ENST00000451859	C3	P01024	1663 aa		13.79	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms