RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 SUPT6HQ7KZ85 1726 aaKnown RBP26.22■■□□□ 1.79
HMGA1-205ENST00000447654 HECW1Q76N89 1606 aa26.22■■□□□ 1.79
HMGA1-205ENST00000447654 ARHGEF11O15085 1522 aa26.22■■□□□ 1.79
HMGA1-205ENST00000447654 ANP32AP39687 249 aaKnown RBP26.22■■□□□ 1.79
HMGA1-205ENST00000447654 CCDC18Q5T9S5 1454 aa26.21■■□□□ 1.79
HMGA1-205ENST00000447654 KIAA0556O60303 1618 aa26.2■■□□□ 1.78
HMGA1-205ENST00000447654 MAGI1Q96QZ7 1491 aaPredicted RBP26.19■■□□□ 1.78
HMGA1-205ENST00000447654 CEP170Q5SW79 1584 aa26.18■■□□□ 1.78
HMGA1-205ENST00000447654 CHMP7Q8WUX9 453 aaPredicted RBP26.17■■□□□ 1.78
HMGA1-205ENST00000447654 SYNJ2O15056 1496 aa26.16■■□□□ 1.78
HMGA1-205ENST00000447654 WASHC2CQ9Y4E1 1318 aa26.16■■□□□ 1.78
HMGA1-205ENST00000447654 FBLN2P98095 1184 aa26.16■■□□□ 1.78
HMGA1-205ENST00000447654 ZBTB47Q9UFB7 747 aaPredicted RBP26.15■■□□□ 1.78
HMGA1-205ENST00000447654 HNRNPUQ00839 825 aaKnown RBP eCLIP26.13■■□□□ 1.77
HMGA1-205ENST00000447654 SIN3AQ96ST3 1273 aa26.12■■□□□ 1.77
HMGA1-205ENST00000447654 PTPN23Q9H3S7 1636 aa26.11■■□□□ 1.77
HMGA1-205ENST00000447654 IRX6P78412 446 aaPredicted RBP26.1■■□□□ 1.77
HMGA1-205ENST00000447654 ZBTB4Q9P1Z0 1013 aaPredicted RBP26.09■■□□□ 1.77
HMGA1-205ENST00000447654 NUP153P49790 1475 aaKnown RBP26.09■■□□□ 1.77
HMGA1-205ENST00000447654 HFM1A2PYH4 1435 aa26.06■■□□□ 1.76
HMGA1-205ENST00000447654 NUP160Q12769 1436 aa26.04■■□□□ 1.76
HMGA1-205ENST00000447654 NAIPQ13075 1403 aa26.04■■□□□ 1.76
HMGA1-205ENST00000447654 RAPGEF6Q8TEU7 1601 aa26.02■■□□□ 1.76
HMGA1-205ENST00000447654 RTN4Q9NQC3 1192 aaKnown RBP26.02■■□□□ 1.76
HMGA1-205ENST00000447654 TCOF1Q13428 1488 aaKnown RBP26.02■■□□□ 1.76
HMGA1-205ENST00000447654 PLB1Q6P1J6 1458 aa25.99■■□□□ 1.75
HMGA1-205ENST00000447654 B4GALNT3Q6L9W6 998 aa25.99■■□□□ 1.75
HMGA1-205ENST00000447654 JPH4Q96JJ6 628 aa25.99■■□□□ 1.75
HMGA1-205ENST00000447654 CHIC2Q9UKJ5 165 aa25.99■■□□□ 1.75
HMGA1-205ENST00000447654 PKNOX2Q96KN3 472 aa25.96■■□□□ 1.75
HMGA1-205ENST00000447654 RRP7BPQ9NSQ0 103 aa25.95■■□□□ 1.74
HMGA1-205ENST00000447654 RSPH6AQ9H0K4 717 aa25.94■■□□□ 1.74
HMGA1-205ENST00000447654 PPM1GO15355 546 aaPredicted RBP25.93■■□□□ 1.74
HMGA1-205ENST00000447654 MIA2Q96PC5 1412 aa25.92■■□□□ 1.74
HMGA1-205ENST00000447654 UACAQ9BZF9 1416 aa25.92■■□□□ 1.74
HMGA1-205ENST00000447654 PRG4Q92954 1404 aaPredicted RBP25.91■■□□□ 1.74
HMGA1-205ENST00000447654 EIF5BO60841 1220 aaKnown RBP25.9■■□□□ 1.74
HMGA1-205ENST00000447654 ZBED9Q6R2W3 1325 aa25.9■■□□□ 1.74
HMGA1-205ENST00000447654 ZNF644Q9H582 1327 aaPredicted RBP25.9■■□□□ 1.74
HMGA1-205ENST00000447654 KDM6BO15054 1643 aa25.89■■□□□ 1.73
HMGA1-205ENST00000447654 CARMIL2Q6F5E8 1435 aa25.85■■□□□ 1.73
HMGA1-205ENST00000447654 NEFMP07197 916 aa25.83■■□□□ 1.73
HMGA1-205ENST00000447654 GCC2Q8IWJ2 1684 aa25.81■■□□□ 1.72
HMGA1-205ENST00000447654 DENND4BO75064 1496 aaPredicted RBP25.81■■□□□ 1.72
HMGA1-205ENST00000447654 TROQ12816 1431 aaPredicted RBP25.81■■□□□ 1.72
HMGA1-205ENST00000447654 GLIPR1L2Q4G1C9 344 aa25.81■■□□□ 1.72
HMGA1-205ENST00000447654 KIF14Q15058 1648 aa25.79■■□□□ 1.72
HMGA1-205ENST00000447654 ABCC5O15440 1437 aa25.78■■□□□ 1.72
HMGA1-205ENST00000447654 DAPK1P53355 1430 aa25.78■■□□□ 1.72
HMGA1-205ENST00000447654 AKNAQ7Z591 1439 aa25.77■■□□□ 1.72
HMGA1-205ENST00000447654 RNF123Q5XPI4 1314 aa25.77■■□□□ 1.72
HMGA1-205ENST00000447654 ABCA8O94911 1581 aa25.76■■□□□ 1.71
HMGA1-205ENST00000447654 GSE1Q14687 1217 aa25.74■■□□□ 1.71
HMGA1-205ENST00000447654 DNMT1P26358 1616 aaKnown RBP25.73■■□□□ 1.71
HMGA1-205ENST00000447654 SMG6Q86US8 1419 aaKnown RBP25.73■■□□□ 1.71
HMGA1-205ENST00000447654 GPATCH8Q9UKJ3 1502 aaKnown RBP25.73■■□□□ 1.71
HMGA1-205ENST00000447654 CHD1O14646 1710 aa25.72■■□□□ 1.71
HMGA1-205ENST00000447654 HIRIP3Q9BW71 556 aaPredicted RBP25.72■■□□□ 1.71
HMGA1-205ENST00000447654 ATP10BO94823 1461 aa25.71■■□□□ 1.71
HMGA1-205ENST00000447654 FAM43AQ8N2R8 423 aa25.71■■□□□ 1.71
HMGA1-205ENST00000447654 TONSLQ96HA7 1378 aa25.69■■□□□ 1.7
HMGA1-205ENST00000447654 ADCY10Q96PN6 1610 aa25.69■■□□□ 1.7
HMGA1-205ENST00000447654 CFDP1Q9UEE9 299 aaPredicted RBP25.68■■□□□ 1.7
HMGA1-205ENST00000447654 BRPF3Q9ULD4 1205 aa25.68■■□□□ 1.7
HMGA1-205ENST00000447654 OSCARQ8IYS5 282 aa25.68■■□□□ 1.7
HMGA1-205ENST00000447654 CAMSAP2Q08AD1 1489 aa25.68■■□□□ 1.7
HMGA1-205ENST00000447654 KDM5BQ9UGL1 1544 aa25.67■■□□□ 1.7
HMGA1-205ENST00000447654 ROCK1Q13464 1354 aa25.66■■□□□ 1.7
HMGA1-205ENST00000447654 FOXD1Q16676 465 aa25.65■■□□□ 1.7
HMGA1-205ENST00000447654 ZNF777Q9ULD5 760 aaPredicted RBP25.65■■□□□ 1.7
HMGA1-205ENST00000447654 TCERG1O14776 1098 aaKnown RBP25.64■■□□□ 1.7
HMGA1-205ENST00000447654 MPHOSPH9Q99550 1183 aa25.64■■□□□ 1.7
HMGA1-205ENST00000447654 CNTLNQ9NXG0 1405 aa25.64■■□□□ 1.69
HMGA1-205ENST00000447654 PTPRGP23470 1445 aa25.63■■□□□ 1.69
HMGA1-205ENST00000447654 PLEKHD1A6NEE1 506 aa25.61■■□□□ 1.69
HMGA1-205ENST00000447654 ITSN2Q9NZM3 1697 aa25.61■■□□□ 1.69
HMGA1-205ENST00000447654 ABCC10Q5T3U5 1492 aa25.6■■□□□ 1.69
HMGA1-205ENST00000447654 MS4A1P11836 297 aa25.59■■□□□ 1.69
HMGA1-205ENST00000447654 DDRGK1Q96HY6 314 aa25.59■■□□□ 1.69
HMGA1-205ENST00000447654 ERCC6L2Q5T890 1561 aa25.58■■□□□ 1.69
HMGA1-205ENST00000447654 CDC42BPAQ5VT25 1732 aa25.58■■□□□ 1.68
HMGA1-205ENST00000447654 LAS1LQ9Y4W2 734 aaKnown RBP25.58■■□□□ 1.68
HMGA1-205ENST00000447654 NCOA1Q15788 1441 aa25.55■■□□□ 1.68
HMGA1-205ENST00000447654 NUDCQ9Y266 331 aa25.54■■□□□ 1.68
HMGA1-205ENST00000447654 SHROOM2Q13796 1616 aa25.54■■□□□ 1.68
HMGA1-205ENST00000447654 PRKRIP1Q9H875 184 aaPredicted RBP25.52■■□□□ 1.68
HMGA1-205ENST00000447654 CROCC2H7BZ55 1655 aa25.5■■□□□ 1.67
HMGA1-205ENST00000447654 BACH2Q9BYV9 841 aa25.49■■□□□ 1.67
HMGA1-205ENST00000447654 ANKRD30BQ9BXX2 1392 aa25.48■■□□□ 1.67
HMGA1-205ENST00000447654 MRS2Q9HD23 443 aa25.48■■□□□ 1.67
HMGA1-205ENST00000447654 PDE4AP27815 886 aa25.47■■□□□ 1.67
HMGA1-205ENST00000447654 ADGRL2O95490 1459 aa25.46■■□□□ 1.67
HMGA1-205ENST00000447654 ADGBQ8N7X0 1667 aa25.46■■□□□ 1.67
HMGA1-205ENST00000447654 PZPP20742 1482 aa25.45■■□□□ 1.66
HMGA1-205ENST00000447654 FAM9BQ8IZU0 186 aa25.45■■□□□ 1.66
HMGA1-205ENST00000447654 CCDC184Q52MB2 194 aa25.44■■□□□ 1.66
HMGA1-205ENST00000447654 SLC4A1APQ9BWU0 796 aaKnown RBP25.44■■□□□ 1.66
HMGA1-205ENST00000447654 FRAT1Q92837 279 aaPredicted RBP25.44■■□□□ 1.66
HMGA1-205ENST00000447654 L3MBTL2Q969R5 705 aa25.44■■□□□ 1.66
HMGA1-205ENST00000447654 NFKBIBQ15653 356 aa25.43■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 178.3 ms