RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 RRBP1Q9P2E9 1410 aaKnown RBP19.47■□□□□ 0.71
SCLT1-202ENST00000439369 CFDP1Q9UEE9 299 aaPredicted RBP19.46■□□□□ 0.71
SCLT1-202ENST00000439369 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.45■□□□□ 0.7
SCLT1-202ENST00000439369 CFAP74Q9C0B2 1584 aa19.45■□□□□ 0.7
SCLT1-202ENST00000439369 ARHGAP5Q13017 1502 aa19.45■□□□□ 0.7
SCLT1-202ENST00000439369 CDC42BPBQ9Y5S2 1711 aa19.45■□□□□ 0.7
SCLT1-202ENST00000439369 TCOF1Q13428 1488 aaKnown RBP19.44■□□□□ 0.7
SCLT1-202ENST00000439369 EFCAB2Q5VUJ9 269 aa19.44■□□□□ 0.7
SCLT1-202ENST00000439369 PLEKHH2Q8IVE3 1493 aa19.42■□□□□ 0.7
SCLT1-202ENST00000439369 TEX14Q8IWB6 1497 aa19.42■□□□□ 0.7
SCLT1-202ENST00000439369 FANCAO15360 1455 aa19.41■□□□□ 0.7
SCLT1-202ENST00000439369 NEO1Q92859 1461 aa19.41■□□□□ 0.7
SCLT1-202ENST00000439369 PTPN23Q9H3S7 1636 aa19.41■□□□□ 0.7
SCLT1-202ENST00000439369 CAMSAP2Q08AD1 1489 aa19.38■□□□□ 0.69
SCLT1-202ENST00000439369 KIAA1107Q9UPP5 1409 aa19.38■□□□□ 0.69
SCLT1-202ENST00000439369 SAMD9LQ8IVG5 1584 aa19.37■□□□□ 0.69
SCLT1-202ENST00000439369 PPRC1Q5VV67 1664 aaKnown RBP19.36■□□□□ 0.69
SCLT1-202ENST00000439369 ABCC1P33527 1531 aa19.35■□□□□ 0.69
SCLT1-202ENST00000439369 AKNAQ7Z591 1439 aa19.34■□□□□ 0.69
SCLT1-202ENST00000439369 TRHP20396 242 aaPredicted RBP19.34■□□□□ 0.69
SCLT1-202ENST00000439369 ARHGEF5Q12774 1597 aa19.33■□□□□ 0.69
SCLT1-202ENST00000439369 TRIM26Q12899 539 aaPredicted RBP19.33■□□□□ 0.68
SCLT1-202ENST00000439369 RSPH4AQ5TD94 716 aa19.33■□□□□ 0.68
SCLT1-202ENST00000439369 ZNF777Q9ULD5 760 aaPredicted RBP19.32■□□□□ 0.68
SCLT1-202ENST00000439369 ADGRL1O94910 1474 aa19.31■□□□□ 0.68
SCLT1-202ENST00000439369 ZNF644Q9H582 1327 aaPredicted RBP19.3■□□□□ 0.68
SCLT1-202ENST00000439369 MBD5Q9P267 1494 aa19.3■□□□□ 0.68
SCLT1-202ENST00000439369 FAM50AQ14320 339 aaKnown RBP19.3■□□□□ 0.68
SCLT1-202ENST00000439369 TSPOAP1O95153 1857 aa19.29■□□□□ 0.68
SCLT1-202ENST00000439369 SYCP2Q9BX26 1530 aa19.29■□□□□ 0.68
SCLT1-202ENST00000439369 DNMT1P26358 1616 aaKnown RBP19.29■□□□□ 0.68
SCLT1-202ENST00000439369 CCDC141Q6ZP82 1450 aa19.28■□□□□ 0.68
SCLT1-202ENST00000439369 SCAPERQ9BY12 1400 aa19.27■□□□□ 0.68
SCLT1-202ENST00000439369 ARHGEF12Q9NZN5 1544 aa19.26■□□□□ 0.67
SCLT1-202ENST00000439369 SHANK2Q9UPX8 1470 aa19.26■□□□□ 0.67
SCLT1-202ENST00000439369 DAPK1P53355 1430 aa19.25■□□□□ 0.67
SCLT1-202ENST00000439369 DENND4BO75064 1496 aaPredicted RBP19.25■□□□□ 0.67
SCLT1-202ENST00000439369 ZNF518AQ6AHZ1 1483 aa19.25■□□□□ 0.67
SCLT1-202ENST00000439369 POGZQ7Z3K3 1410 aa19.25■□□□□ 0.67
SCLT1-202ENST00000439369 ABCC5O15440 1437 aa19.24■□□□□ 0.67
SCLT1-202ENST00000439369 HNRNPMP52272 730 aaKnown RBP eCLIP19.23■□□□□ 0.673e-7■■■■■ 29.5
SCLT1-202ENST00000439369 CROCC2H7BZ55 1655 aa19.23■□□□□ 0.67
SCLT1-202ENST00000439369 MAST1Q9Y2H9 1570 aa19.22■□□□□ 0.67
SCLT1-202ENST00000439369 KDM5CP41229 1560 aa19.21■□□□□ 0.67
SCLT1-202ENST00000439369 TRAPPC8Q9Y2L5 1435 aa19.21■□□□□ 0.67
SCLT1-202ENST00000439369 RTEL1-TNFRSF6BF6WH68 1400 aa19.19■□□□□ 0.66
SCLT1-202ENST00000439369 TSPY4P0CV99 314 aa19.19■□□□□ 0.66
SCLT1-202ENST00000439369 TSPY10P0CW01 314 aa19.19■□□□□ 0.66
SCLT1-202ENST00000439369 RICTORQ6R327 1708 aa19.19■□□□□ 0.66
SCLT1-202ENST00000439369 ROCK1Q13464 1354 aa19.19■□□□□ 0.66
SCLT1-202ENST00000439369 ADGRL2O95490 1459 aa19.18■□□□□ 0.66
SCLT1-202ENST00000439369 ZMYM4Q5VZL5 1548 aa19.18■□□□□ 0.66
SCLT1-202ENST00000439369 C9orf84Q5VXU9 1444 aa19.17■□□□□ 0.66
SCLT1-202ENST00000439369 MLH3Q9UHC1 1453 aa19.16■□□□□ 0.66
SCLT1-202ENST00000439369 FRMPD1Q5SYB0 1578 aa19.16■□□□□ 0.66
SCLT1-202ENST00000439369 PTPRKQ15262 1439 aa19.16■□□□□ 0.66
SCLT1-202ENST00000439369 MAGI2Q86UL8 1455 aa19.16■□□□□ 0.66
SCLT1-202ENST00000439369 INO80Q9ULG1 1556 aaPredicted RBP19.15■□□□□ 0.66
SCLT1-202ENST00000439369 ADGBQ8N7X0 1667 aa19.15■□□□□ 0.66
SCLT1-202ENST00000439369 SPAG9O60271 1321 aaKnown RBP19.15■□□□□ 0.66
SCLT1-202ENST00000439369 AFAP1Q8N556 730 aa19.14■□□□□ 0.65
SCLT1-202ENST00000439369 ZFYVE16Q7Z3T8 1539 aa19.14■□□□□ 0.65
SCLT1-202ENST00000439369 PLXNC1O60486 1568 aa19.14■□□□□ 0.65
SCLT1-202ENST00000439369 HECW2Q9P2P5 1572 aa19.14■□□□□ 0.65
SCLT1-202ENST00000439369 ANKRD30AQ9BXX3 1397 aa19.13■□□□□ 0.65
SCLT1-202ENST00000439369 COL17A1Q9UMD9 1497 aaPredicted RBP19.13■□□□□ 0.65
SCLT1-202ENST00000439369 KDM6BO15054 1643 aa19.12■□□□□ 0.65
SCLT1-202ENST00000439369 ATP7AQ04656 1500 aa19.12■□□□□ 0.65
SCLT1-202ENST00000439369 ITGAEP38570 1179 aa19.12■□□□□ 0.65
SCLT1-202ENST00000439369 NCOA1Q15788 1441 aa19.11■□□□□ 0.65
SCLT1-202ENST00000439369 RAPGEF3O95398 923 aa19.11■□□□□ 0.65
SCLT1-202ENST00000439369 HFM1A2PYH4 1435 aa19.09■□□□□ 0.65
SCLT1-202ENST00000439369 KIDINS220Q9ULH0 1771 aa19.08■□□□□ 0.64
SCLT1-202ENST00000439369 CHIC2Q9UKJ5 165 aa19.06■□□□□ 0.64
SCLT1-202ENST00000439369 KIF15Q9NS87 1388 aa19.06■□□□□ 0.64
SCLT1-202ENST00000439369 GCC2Q8IWJ2 1684 aa19.05■□□□□ 0.64
SCLT1-202ENST00000439369 PCGF6Q9BYE7 350 aa19.05■□□□□ 0.64
SCLT1-202ENST00000439369 NAIPQ13075 1403 aa19.05■□□□□ 0.64
SCLT1-202ENST00000439369 DUOX2Q9NRD8 1548 aa19.05■□□□□ 0.64
SCLT1-202ENST00000439369 ACIN1Q9UKV3 1341 aaKnown RBP19.04■□□□□ 0.64
SCLT1-202ENST00000439369 ARHGEF40Q8TER5 1519 aa19.03■□□□□ 0.64
SCLT1-202ENST00000439369 REREQ9P2R6 1566 aa19.02■□□□□ 0.64
SCLT1-202ENST00000439369 DIP2CQ9Y2E4 1556 aa19.02■□□□□ 0.64
SCLT1-202ENST00000439369 ERBINQ96RT1 1412 aa19.01■□□□□ 0.63
SCLT1-202ENST00000439369 SETD5Q9C0A6 1442 aa19.01■□□□□ 0.63
SCLT1-202ENST00000439369 ABCA6Q8N139 1617 aa19.01■□□□□ 0.63
SCLT1-202ENST00000439369 MYT1LQ9UL68 1186 aa19.01■□□□□ 0.63
SCLT1-202ENST00000439369 HRCP23327 699 aa19■□□□□ 0.63
SCLT1-202ENST00000439369 RRP7BPQ9NSQ0 103 aa19■□□□□ 0.63
SCLT1-202ENST00000439369 YEATS2Q9ULM3 1422 aa19■□□□□ 0.63
SCLT1-202ENST00000439369 ATP10AO60312 1499 aa18.99■□□□□ 0.63
SCLT1-202ENST00000439369 A2MP01023 1474 aa18.99■□□□□ 0.63
SCLT1-202ENST00000439369 DHX29Q7Z478 1369 aaKnown RBP18.99■□□□□ 0.63
SCLT1-202ENST00000439369 ANKRD50Q9ULJ7 1429 aa18.99■□□□□ 0.63
SCLT1-202ENST00000439369 EIF2AK4Q9P2K8 1649 aaKnown RBP18.98■□□□□ 0.63
SCLT1-202ENST00000439369 BCORL1Q5H9F3 1711 aa18.95■□□□□ 0.62
SCLT1-202ENST00000439369 AGLP35573 1532 aa18.95■□□□□ 0.62
SCLT1-202ENST00000439369 RAB3GAP2Q9H2M9 1393 aa18.93■□□□□ 0.62
SCLT1-202ENST00000439369 RNF17Q9BXT8 1623 aaKnown RBP18.89■□□□□ 0.61
SCLT1-202ENST00000439369 UNC13BO14795 1591 aa18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms