RNA–Protein interactions for RNA: ENST00000433271.6

TMEM248-205, Transcript of transmembrane protein 248, humanhuman

TSL 1 (best)

Gene TMEM248, Length 1,610 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM248-205ENST00000433271 TCOF1Q13428 1488 aaKnown RBP40.27■■■■■ 4.04
TMEM248-205ENST00000433271 CDC42BPBQ9Y5S2 1711 aa40.26■■■■■ 4.04
TMEM248-205ENST00000433271 ARAP3Q8WWN8 1544 aa40.23■■■■■ 4.03
TMEM248-205ENST00000433271 DIP2BQ9P265 1576 aa40.23■■■■■ 4.03
TMEM248-205ENST00000433271 ARHGAP5Q13017 1502 aa40.21■■■■■ 4.03
TMEM248-205ENST00000433271 CD109Q6YHK3 1445 aa40.21■■■■■ 4.03
TMEM248-205ENST00000433271 FAM69CQ0P6D2 419 aa40.2■■■■■ 4.03
TMEM248-205ENST00000433271 ZNF777Q9ULD5 760 aaPredicted RBP40.2■■■■■ 4.03
TMEM248-205ENST00000433271 ZNF644Q9H582 1327 aaPredicted RBP40.19■■■■■ 4.02
TMEM248-205ENST00000433271 EFCAB2Q5VUJ9 269 aa40.18■■■■■ 4.02
TMEM248-205ENST00000433271 CAMSAP2Q08AD1 1489 aa40.16■■■■■ 4.02
TMEM248-205ENST00000433271 MAP3K4Q9Y6R4 1608 aa40.13■■■■■ 4.01
TMEM248-205ENST00000433271 SAMD9LQ8IVG5 1584 aa40.09■■■■■ 4.01
TMEM248-205ENST00000433271 FANCAO15360 1455 aa40.08■■■■■ 4.01
TMEM248-205ENST00000433271 KIF13AQ9H1H9 1805 aa40.04■■■■■ 4
TMEM248-205ENST00000433271 PLEKHH2Q8IVE3 1493 aa40.04■■■■■ 4
TMEM248-205ENST00000433271 ITGAEP38570 1179 aa40.04■■■■■ 4
TMEM248-205ENST00000433271 KIAA1107Q9UPP5 1409 aa40.02■■■■■ 4
TMEM248-205ENST00000433271 CFAP74Q9C0B2 1584 aa39.96■■■■□ 3.99
TMEM248-205ENST00000433271 MBD5Q9P267 1494 aa39.96■■■■□ 3.99
TMEM248-205ENST00000433271 HNRNPMP52272 730 aaKnown RBP eCLIP39.96■■■■□ 3.991e-6■■■■■ 30.8
TMEM248-205ENST00000433271 DNMT1P26358 1616 aaKnown RBP39.95■■■■□ 3.99
TMEM248-205ENST00000433271 ABCC5O15440 1437 aa39.95■■■■□ 3.99
TMEM248-205ENST00000433271 DAPK1P53355 1430 aa39.95■■■■□ 3.99
TMEM248-205ENST00000433271 RSPH4AQ5TD94 716 aa39.94■■■■□ 3.99
TMEM248-205ENST00000433271 AKNAQ7Z591 1439 aa39.94■■■■□ 3.98
TMEM248-205ENST00000433271 ABCC1P33527 1531 aa39.94■■■■□ 3.98
TMEM248-205ENST00000433271 NEO1Q92859 1461 aa39.93■■■■□ 3.98
TMEM248-205ENST00000433271 SYCP2Q9BX26 1530 aa39.92■■■■□ 3.98
TMEM248-205ENST00000433271 ARHGEF5Q12774 1597 aa39.92■■■■□ 3.98
TMEM248-205ENST00000433271 PTPRKQ15262 1439 aa39.92■■■■□ 3.98
TMEM248-205ENST00000433271 ARHGEF12Q9NZN5 1544 aa39.9■■■■□ 3.98
TMEM248-205ENST00000433271 ADGRL1O94910 1474 aa39.88■■■■□ 3.97
TMEM248-205ENST00000433271 TEX14Q8IWB6 1497 aa39.87■■■■□ 3.97
TMEM248-205ENST00000433271 PPRC1Q5VV67 1664 aaKnown RBP39.85■■■■□ 3.97
TMEM248-205ENST00000433271 CCDC141Q6ZP82 1450 aa39.85■■■■□ 3.97
TMEM248-205ENST00000433271 TSPOAP1O95153 1857 aa39.85■■■■□ 3.97
TMEM248-205ENST00000433271 TRHP20396 242 aaPredicted RBP39.83■■■■□ 3.97
TMEM248-205ENST00000433271 SCAPERQ9BY12 1400 aa39.83■■■■□ 3.97
TMEM248-205ENST00000433271 TSPY4P0CV99 314 aa39.8■■■■□ 3.96
TMEM248-205ENST00000433271 TSPY10P0CW01 314 aa39.8■■■■□ 3.96
TMEM248-205ENST00000433271 CROCC2H7BZ55 1655 aa39.79■■■■□ 3.96
TMEM248-205ENST00000433271 SHANK2Q9UPX8 1470 aa39.79■■■■□ 3.96
TMEM248-205ENST00000433271 TRAPPC8Q9Y2L5 1435 aa39.78■■■■□ 3.96
TMEM248-205ENST00000433271 CHIC2Q9UKJ5 165 aa39.78■■■■□ 3.96
TMEM248-205ENST00000433271 ROCK1Q13464 1354 aa39.74■■■■□ 3.95
TMEM248-205ENST00000433271 C9orf84Q5VXU9 1444 aa39.73■■■■□ 3.95
TMEM248-205ENST00000433271 AFAP1Q8N556 730 aa39.72■■■■□ 3.95
TMEM248-205ENST00000433271 ADGRL2O95490 1459 aa39.68■■■■□ 3.94
TMEM248-205ENST00000433271 DENND4BO75064 1496 aaPredicted RBP39.68■■■■□ 3.94
TMEM248-205ENST00000433271 MAST1Q9Y2H9 1570 aa39.67■■■■□ 3.94
TMEM248-205ENST00000433271 POGZQ7Z3K3 1410 aa39.67■■■■□ 3.94
TMEM248-205ENST00000433271 ZNF518AQ6AHZ1 1483 aa39.67■■■■□ 3.94
TMEM248-205ENST00000433271 HFM1A2PYH4 1435 aa39.66■■■■□ 3.94
TMEM248-205ENST00000433271 ANKRD30AQ9BXX3 1397 aa39.65■■■■□ 3.94
TMEM248-205ENST00000433271 NCOA1Q15788 1441 aa39.65■■■■□ 3.94
TMEM248-205ENST00000433271 ADGBQ8N7X0 1667 aa39.64■■■■□ 3.94
TMEM248-205ENST00000433271 RRP7BPQ9NSQ0 103 aa39.64■■■■□ 3.94
TMEM248-205ENST00000433271 SPAG9O60271 1321 aaKnown RBP39.62■■■■□ 3.93
TMEM248-205ENST00000433271 SETD5Q9C0A6 1442 aa39.62■■■■□ 3.93
TMEM248-205ENST00000433271 NAIPQ13075 1403 aa39.61■■■■□ 3.93
TMEM248-205ENST00000433271 RTEL1-TNFRSF6BF6WH68 1400 aa39.6■■■■□ 3.93
TMEM248-205ENST00000433271 RAPGEF3O95398 923 aa39.58■■■■□ 3.93
TMEM248-205ENST00000433271 KDM5CP41229 1560 aa39.57■■■■□ 3.93
TMEM248-205ENST00000433271 RICTORQ6R327 1708 aa39.53■■■■□ 3.92
TMEM248-205ENST00000433271 ZFYVE16Q7Z3T8 1539 aa39.52■■■■□ 3.92
TMEM248-205ENST00000433271 GCC2Q8IWJ2 1684 aa39.51■■■■□ 3.92
TMEM248-205ENST00000433271 RAB3GAP2Q9H2M9 1393 aa39.51■■■■□ 3.92
TMEM248-205ENST00000433271 INO80Q9ULG1 1556 aaPredicted RBP39.51■■■■□ 3.92
TMEM248-205ENST00000433271 PLXNC1O60486 1568 aa39.5■■■■□ 3.91
TMEM248-205ENST00000433271 KIF15Q9NS87 1388 aa39.5■■■■□ 3.91
TMEM248-205ENST00000433271 ATP7AQ04656 1500 aa39.5■■■■□ 3.91
TMEM248-205ENST00000433271 MLH3Q9UHC1 1453 aa39.49■■■■□ 3.91
TMEM248-205ENST00000433271 HRCP23327 699 aa39.48■■■■□ 3.91
TMEM248-205ENST00000433271 FRMPD1Q5SYB0 1578 aa39.47■■■■□ 3.91
TMEM248-205ENST00000433271 COL17A1Q9UMD9 1497 aaPredicted RBP39.47■■■■□ 3.91
TMEM248-205ENST00000433271 MYT1LQ9UL68 1186 aa39.45■■■■□ 3.91
TMEM248-205ENST00000433271 HECW2Q9P2P5 1572 aa39.44■■■■□ 3.9
TMEM248-205ENST00000433271 KIDINS220Q9ULH0 1771 aa39.42■■■■□ 3.9
TMEM248-205ENST00000433271 ZMYM4Q5VZL5 1548 aa39.41■■■■□ 3.9
TMEM248-205ENST00000433271 ANKRD50Q9ULJ7 1429 aa39.4■■■■□ 3.9
TMEM248-205ENST00000433271 DUOX2Q9NRD8 1548 aa39.37■■■■□ 3.89
TMEM248-205ENST00000433271 MAGI2Q86UL8 1455 aa39.35■■■■□ 3.89
TMEM248-205ENST00000433271 KDM6BO15054 1643 aa39.34■■■■□ 3.89
TMEM248-205ENST00000433271 ACIN1Q9UKV3 1341 aaKnown RBP39.31■■■■□ 3.88
TMEM248-205ENST00000433271 ERBINQ96RT1 1412 aa39.29■■■■□ 3.88
TMEM248-205ENST00000433271 DHX29Q7Z478 1369 aaKnown RBP39.26■■■■□ 3.88
TMEM248-205ENST00000433271 ABCA6Q8N139 1617 aa39.25■■■■□ 3.87
TMEM248-205ENST00000433271 YEATS2Q9ULM3 1422 aa39.24■■■■□ 3.87
TMEM248-205ENST00000433271 DIP2CQ9Y2E4 1556 aa39.23■■■■□ 3.87
TMEM248-205ENST00000433271 A2MP01023 1474 aa39.22■■■■□ 3.87
TMEM248-205ENST00000433271 TRIM52Q96A61 297 aa39.16■■■■□ 3.86
TMEM248-205ENST00000433271 ATP10AO60312 1499 aa39.14■■■■□ 3.86
TMEM248-205ENST00000433271 EIF2AK4Q9P2K8 1649 aaKnown RBP39.12■■■■□ 3.85
TMEM248-205ENST00000433271 DHX57Q6P158 1386 aaKnown RBP39.11■■■■□ 3.85
TMEM248-205ENST00000433271 ARHGEF40Q8TER5 1519 aa39.1■■■■□ 3.85
TMEM248-205ENST00000433271 CCER1Q8TC90 406 aaPredicted RBP39.08■■■■□ 3.85
TMEM248-205ENST00000433271 KIF3BO15066 747 aa39.07■■■■□ 3.85
TMEM248-205ENST00000433271 REREQ9P2R6 1566 aa39.06■■■■□ 3.84
TMEM248-205ENST00000433271 UNC13BO14795 1591 aa39.05■■■■□ 3.84
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms