RNA–Protein interactions for RNA: ENST00000428135.7

SNX13-203, Transcript of sorting nexin 13, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX13, Length 6,357 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-203ENST00000428135 OS9Q13438 667 aaPredicted RBP12.7□□□□□ -0.38
SNX13-203ENST00000428135 PKD2Q13563 968 aa12.69□□□□□ -0.38
SNX13-203ENST00000428135 NCLP19338 710 aaKnown RBP12.69□□□□□ -0.38
SNX13-203ENST00000428135 FHAD1B1AJZ9 1412 aa12.68□□□□□ -0.38
SNX13-203ENST00000428135 PTPRGP23470 1445 aa12.68□□□□□ -0.38
SNX13-203ENST00000428135 CCDC9Q9Y3X0 531 aaKnown RBP12.67□□□□□ -0.38
SNX13-203ENST00000428135 WASHC2CQ9Y4E1 1318 aa12.67□□□□□ -0.38
SNX13-203ENST00000428135 RUSC2Q8N2Y8 1516 aa12.66□□□□□ -0.38
SNX13-203ENST00000428135 TMF1P82094 1093 aa12.66□□□□□ -0.38
SNX13-203ENST00000428135 NAP1L2Q9ULW6 460 aaPredicted RBP12.66□□□□□ -0.38
SNX13-203ENST00000428135 CSB-PGBD3P0DP91 1061 aa12.65□□□□□ -0.38
SNX13-203ENST00000428135 MORC1Q86VD1 984 aa12.65□□□□□ -0.38
SNX13-203ENST00000428135 SPAG9O60271 1321 aaKnown RBP12.65□□□□□ -0.38
SNX13-203ENST00000428135 FGD5Q6ZNL6 1462 aa12.65□□□□□ -0.38
SNX13-203ENST00000428135 APBB1O00213 710 aa12.64□□□□□ -0.39
SNX13-203ENST00000428135 CDK11BP21127 795 aaKnown RBP12.63□□□□□ -0.39
SNX13-203ENST00000428135 RAPGEF2Q9Y4G8 1499 aa12.63□□□□□ -0.39
SNX13-203ENST00000428135 GOLGA2Q08379 1002 aa12.63□□□□□ -0.39
SNX13-203ENST00000428135 HDGFP51858 240 aaKnown RBP12.63□□□□□ -0.39
SNX13-203ENST00000428135 GAPVD1Q14C86 1478 aa12.62□□□□□ -0.39
SNX13-203ENST00000428135 HSPA5P11021 654 aaKnown RBP12.59□□□□□ -0.39
SNX13-203ENST00000428135 ISY1Q9ULR0 285 aaKnown RBP12.59□□□□□ -0.39
SNX13-203ENST00000428135 CASC1Q6TDU7 716 aa12.59□□□□□ -0.39
SNX13-203ENST00000428135 LTV1Q96GA3 475 aaPredicted RBP12.58□□□□□ -0.39
SNX13-203ENST00000428135 B4GALNT3Q6L9W6 998 aa12.58□□□□□ -0.4
SNX13-203ENST00000428135 FGD1P98174 961 aa12.58□□□□□ -0.4
SNX13-203ENST00000428135 NUP155O75694 1391 aa12.58□□□□□ -0.4
SNX13-203ENST00000428135 KCNJ4P48050 445 aa12.58□□□□□ -0.4
SNX13-203ENST00000428135 RTF1Q92541 710 aaKnown RBP12.58□□□□□ -0.4
SNX13-203ENST00000428135 EID1Q9Y6B2 187 aa12.57□□□□□ -0.4
SNX13-203ENST00000428135 ARHGAP35Q9NRY4 1499 aa12.57□□□□□ -0.4
SNX13-203ENST00000428135 NCAPD3P42695 1498 aa12.57□□□□□ -0.4
SNX13-203ENST00000428135 BECN1Q14457 450 aa12.56□□□□□ -0.4
SNX13-203ENST00000428135 AMER1Q5JTC6 1135 aaPredicted RBP12.56□□□□□ -0.4
SNX13-203ENST00000428135 FMN1Q68DA7 1419 aa12.56□□□□□ -0.4
SNX13-203ENST00000428135 HDGFL2Q7Z4V5 671 aaPredicted RBP12.56□□□□□ -0.4
SNX13-203ENST00000428135 SPRYD3Q8NCJ5 442 aa12.55□□□□□ -0.4
SNX13-203ENST00000428135 U2AF1L5P0DN76 240 aaPredicted RBP12.54□□□□□ -0.4
SNX13-203ENST00000428135 U2AF1Q01081 240 aaKnown RBP eCLIP12.54□□□□□ -0.4
SNX13-203ENST00000428135 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.54□□□□□ -0.4
SNX13-203ENST00000428135 MPHOSPH9Q99550 1183 aa12.54□□□□□ -0.4
SNX13-203ENST00000428135 ROCK2O75116 1388 aaKnown RBP12.54□□□□□ -0.4
SNX13-203ENST00000428135 NCBP3Q53F19 620 aaKnown RBP12.53□□□□□ -0.4
SNX13-203ENST00000428135 PLCB2Q00722 1185 aa12.53□□□□□ -0.4
SNX13-203ENST00000428135 ZRSR1Q15695 479 aaKnown RBP12.52□□□□□ -0.41
SNX13-203ENST00000428135 NGDNQ8NEJ9 315 aaKnown RBP12.52□□□□□ -0.41
SNX13-203ENST00000428135 SETD5Q9C0A6 1442 aa12.51□□□□□ -0.41
SNX13-203ENST00000428135 TRAK1Q9UPV9 953 aa12.51□□□□□ -0.41
SNX13-203ENST00000428135 CCDC146Q8IYE0 955 aa12.5□□□□□ -0.41
SNX13-203ENST00000428135 PNNQ9H307 717 aaKnown RBP12.5□□□□□ -0.41
SNX13-203ENST00000428135 PRDM2Q13029 1718 aa12.49□□□□□ -0.41
SNX13-203ENST00000428135 MRC2Q9UBG0 1479 aa12.49□□□□□ -0.41
SNX13-203ENST00000428135 CHMP3Q9Y3E7 222 aa12.49□□□□□ -0.41
SNX13-203ENST00000428135 DDRGK1Q96HY6 314 aa12.49□□□□□ -0.41
SNX13-203ENST00000428135 IGF1RP08069 1367 aa12.48□□□□□ -0.41
SNX13-203ENST00000428135 VPS8Q8N3P4 1428 aa12.48□□□□□ -0.41
SNX13-203ENST00000428135 ANKRD30AQ9BXX3 1397 aa12.48□□□□□ -0.41
SNX13-203ENST00000428135 ZNF644Q9H582 1327 aaPredicted RBP12.48□□□□□ -0.41
SNX13-203ENST00000428135 GOLGA6L22H0YM25 854 aa12.48□□□□□ -0.41
SNX13-203ENST00000428135 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.47□□□□□ -0.41
SNX13-203ENST00000428135 HSP90AB1P08238 724 aaKnown RBP12.47□□□□□ -0.41
SNX13-203ENST00000428135 PRG4Q92954 1404 aaPredicted RBP12.47□□□□□ -0.41
SNX13-203ENST00000428135 RAB3GAP2Q9H2M9 1393 aa12.47□□□□□ -0.41
SNX13-203ENST00000428135 PTMAP06454 111 aaKnown RBP12.47□□□□□ -0.41
SNX13-203ENST00000428135 CLSTN1O94985 981 aa12.46□□□□□ -0.41
SNX13-203ENST00000428135 AFAP1Q8N556 730 aa12.45□□□□□ -0.42
SNX13-203ENST00000428135 TRIM44Q96DX7 344 aaPredicted RBP12.44□□□□□ -0.42
SNX13-203ENST00000428135 CCDC18Q5T9S5 1454 aa12.44□□□□□ -0.42
SNX13-203ENST00000428135 AMPHP49418 695 aa12.44□□□□□ -0.42
SNX13-203ENST00000428135 KTN1Q86UP2 1357 aaKnown RBP12.43□□□□□ -0.42
SNX13-203ENST00000428135 ITPRIPQ8IWB1 547 aa12.43□□□□□ -0.42
SNX13-203ENST00000428135 SLC4A10Q6U841 1118 aa12.43□□□□□ -0.42
SNX13-203ENST00000428135 L3MBTL2Q969R5 705 aa12.42□□□□□ -0.42
SNX13-203ENST00000428135 PHF23Q9BUL5 403 aaPredicted RBP12.42□□□□□ -0.42
SNX13-203ENST00000428135 PPP4R2Q9NY27 417 aa12.42□□□□□ -0.42
SNX13-203ENST00000428135 RRP7AQ9Y3A4 280 aaKnown RBP12.42□□□□□ -0.42
SNX13-203ENST00000428135 RAPGEF3O95398 923 aa12.42□□□□□ -0.42
SNX13-203ENST00000428135 CLUAP1Q96AJ1 413 aa12.42□□□□□ -0.42
SNX13-203ENST00000428135 GRIN2BQ13224 1484 aa12.41□□□□□ -0.42
SNX13-203ENST00000428135 SNAPC4Q5SXM2 1469 aa12.41□□□□□ -0.42
SNX13-203ENST00000428135 MEX3CQ5U5Q3 659 aaKnown RBP12.41□□□□□ -0.42
SNX13-203ENST00000428135 DNTTIP2Q5QJE6 756 aaKnown RBP12.4□□□□□ -0.42
SNX13-203ENST00000428135 ELL2O00472 640 aaPredicted RBP12.39□□□□□ -0.43
SNX13-203ENST00000428135 MSH5O43196 834 aa12.38□□□□□ -0.43
SNX13-203ENST00000428135 MS4A1P11836 297 aa12.38□□□□□ -0.43
SNX13-203ENST00000428135 NGEFQ8N5V2 710 aa12.38□□□□□ -0.43
SNX13-203ENST00000428135 TAF7LQ5H9L4 462 aa12.38□□□□□ -0.43
SNX13-203ENST00000428135 MINK1Q8N4C8 1332 aaPredicted RBP12.38□□□□□ -0.43
SNX13-203ENST00000428135 RTN4Q9NQC3 1192 aaKnown RBP12.37□□□□□ -0.43
SNX13-203ENST00000428135 GORABQ5T7V8 394 aa12.37□□□□□ -0.43
SNX13-203ENST00000428135 CHMP4BQ9H444 224 aaKnown RBP12.37□□□□□ -0.43
SNX13-203ENST00000428135 EVA1CP58658 441 aa12.36□□□□□ -0.43
SNX13-203ENST00000428135 TERF2IPQ9NYB0 399 aa12.36□□□□□ -0.43
SNX13-203ENST00000428135 CFTRP13569 1480 aa12.36□□□□□ -0.43
SNX13-203ENST00000428135 TOPBP1Q92547 1522 aa12.36□□□□□ -0.43
SNX13-203ENST00000428135 BICRAQ9NZM4 1560 aa12.36□□□□□ -0.43
SNX13-203ENST00000428135 G3V3G9 751 aa12.35□□□□□ -0.43
SNX13-203ENST00000428135 DCAF8Q5TAQ9 597 aa12.35□□□□□ -0.43
SNX13-203ENST00000428135 SMC4Q9NTJ3 1288 aa12.35□□□□□ -0.43
SNX13-203ENST00000428135 PIP4K2BP78356 416 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms