RNA–Protein interactions for RNA: ENST00000428135.7

SNX13-203, Transcript of sorting nexin 13, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX13, Length 6,357 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-203ENST00000428135 DCAF8L2P0C7V8 631 aa17.75■□□□□ 0.43
SNX13-203ENST00000428135 NISCHQ9Y2I1 1504 aa16.82■□□□□ 0.28
SNX13-203ENST00000428135 SUPT5HO00267 1087 aaKnown RBP16.45■□□□□ 0.22
SNX13-203ENST00000428135 SHROOM4Q9ULL8 1493 aa16.31■□□□□ 0.2
SNX13-203ENST00000428135 EHMT2Q96KQ7 1210 aa16.31■□□□□ 0.2
SNX13-203ENST00000428135 TTBK1Q5TCY1 1321 aaPredicted RBP15.66■□□□□ 0.1
SNX13-203ENST00000428135 FAM9AQ8IZU1 332 aaPredicted RBP15.64■□□□□ 0.09
SNX13-203ENST00000428135 RANGAP1P46060 587 aaPredicted RBP15.56■□□□□ 0.08
SNX13-203ENST00000428135 APLP2Q06481 763 aa15.43■□□□□ 0.06
SNX13-203ENST00000428135 ATP1B4Q9UN42 357 aaPredicted RBP15.31■□□□□ 0.04
SNX13-203ENST00000428135 ABCC9O60706 1549 aa15.24■□□□□ 0.03
SNX13-203ENST00000428135 PABPN1Q86U42 306 aaKnown RBP eCLIP15.15■□□□□ 0.02
SNX13-203ENST00000428135 PCGF6Q9BYE7 350 aa15.13■□□□□ 0.01
SNX13-203ENST00000428135 TRIM41Q8WV44 630 aa15.07■□□□□ 0
SNX13-203ENST00000428135 UBTFP17480 764 aaKnown RBP15□□□□□ -0.01
SNX13-203ENST00000428135 PPARGC1BQ86YN6 1023 aaKnown RBP14.98□□□□□ -0.01
SNX13-203ENST00000428135 CCER1Q8TC90 406 aaPredicted RBP14.84□□□□□ -0.03
SNX13-203ENST00000428135 PELP1Q8IZL8 1130 aaKnown RBP14.82□□□□□ -0.04
SNX13-203ENST00000428135 MYT1LQ9UL68 1186 aa14.77□□□□□ -0.05
SNX13-203ENST00000428135 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.74□□□□□ -0.05
SNX13-203ENST00000428135 HNRNPUL2Q1KMD3 747 aaKnown RBP14.74□□□□□ -0.05
SNX13-203ENST00000428135 CHIC1Q5VXU3 224 aa14.71□□□□□ -0.06
SNX13-203ENST00000428135 ITGAEP38570 1179 aa14.7□□□□□ -0.06
SNX13-203ENST00000428135 YTHDC1Q96MU7 727 aaKnown RBP14.64□□□□□ -0.07
SNX13-203ENST00000428135 CNGB1Q14028 1251 aaPredicted RBP14.59□□□□□ -0.07
SNX13-203ENST00000428135 POLR3GLQ9BT43 218 aa14.58□□□□□ -0.08
SNX13-203ENST00000428135 FBLN2P98095 1184 aa14.52□□□□□ -0.09
SNX13-203ENST00000428135 LOC105371045A0A1W2PR82 267 aa14.51□□□□□ -0.09
SNX13-203ENST00000428135 ERICH6Q7L0X2 663 aa14.46□□□□□ -0.1
SNX13-203ENST00000428135 CENPBP07199 599 aaPredicted RBP14.43□□□□□ -0.1
SNX13-203ENST00000428135 ZEB1P37275 1124 aaPredicted RBP14.39□□□□□ -0.11
SNX13-203ENST00000428135 SLC4A1APQ9BWU0 796 aaKnown RBP14.35□□□□□ -0.11
SNX13-203ENST00000428135 NEFLP07196 543 aa14.3□□□□□ -0.12
SNX13-203ENST00000428135 ARID3CA6NKF2 412 aa14.25□□□□□ -0.13
SNX13-203ENST00000428135 SCRIBQ14160 1630 aa14.24□□□□□ -0.13
SNX13-203ENST00000428135 TRIM26Q12899 539 aaPredicted RBP14.23□□□□□ -0.13
SNX13-203ENST00000428135 FAM50AQ14320 339 aaKnown RBP14.21□□□□□ -0.13
SNX13-203ENST00000428135 P3H3Q8IVL6 736 aa14.12□□□□□ -0.15
SNX13-203ENST00000428135 TRIM52Q96A61 297 aa14.12□□□□□ -0.15
SNX13-203ENST00000428135 PLPPR3Q6T4P5 718 aa14.09□□□□□ -0.15
SNX13-203ENST00000428135 NEUROD1Q13562 356 aa14.07□□□□□ -0.16
SNX13-203ENST00000428135 ZNF326Q5BKZ1 582 aaKnown RBP14.05□□□□□ -0.16
SNX13-203ENST00000428135 HRCP23327 699 aa14.05□□□□□ -0.16
SNX13-203ENST00000428135 BCANQ96GW7 911 aa13.95□□□□□ -0.18
SNX13-203ENST00000428135 DAXXQ9UER7 740 aaPredicted RBP13.93□□□□□ -0.18
SNX13-203ENST00000428135 BCL11AQ9H165 835 aa13.92□□□□□ -0.18
SNX13-203ENST00000428135 SLC24A1O60721 1099 aa13.91□□□□□ -0.18
SNX13-203ENST00000428135 ZNF777Q9ULD5 760 aaPredicted RBP13.89□□□□□ -0.19
SNX13-203ENST00000428135 MYT1Q01538 1121 aa13.87□□□□□ -0.19
SNX13-203ENST00000428135 RB1CC1Q8TDY2 1594 aa13.85□□□□□ -0.19
SNX13-203ENST00000428135 CLSPNQ9HAW4 1339 aa13.84□□□□□ -0.19
SNX13-203ENST00000428135 CCDC180Q9P1Z9 1646 aa13.82□□□□□ -0.2
SNX13-203ENST00000428135 ZCCHC6Q5VYS8 1495 aaKnown RBP13.81□□□□□ -0.2
SNX13-203ENST00000428135 DIEXFQ68CQ4 756 aaKnown RBP13.79□□□□□ -0.2
SNX13-203ENST00000428135 NPM1P06748 294 aaKnown RBP eCLIP13.77□□□□□ -0.21
SNX13-203ENST00000428135 CHMP7Q8WUX9 453 aaPredicted RBP13.76□□□□□ -0.21
SNX13-203ENST00000428135 SENP3Q9H4L4 574 aaPredicted RBP13.72□□□□□ -0.21
SNX13-203ENST00000428135 CHGAP10645 457 aaKnown RBP13.72□□□□□ -0.21
SNX13-203ENST00000428135 ERCC6Q03468 1493 aa13.69□□□□□ -0.22
SNX13-203ENST00000428135 CSRNP3Q8WYN3 585 aa13.67□□□□□ -0.22
SNX13-203ENST00000428135 ESF1Q9H501 851 aaKnown RBP13.67□□□□□ -0.22
SNX13-203ENST00000428135 ZNF316A6NFI3 1004 aaPredicted RBP13.63□□□□□ -0.23
SNX13-203ENST00000428135 STAG3Q9UJ98 1225 aa13.63□□□□□ -0.23
SNX13-203ENST00000428135 KCNH8Q96L42 1107 aa13.62□□□□□ -0.23
SNX13-203ENST00000428135 ANP32CO43423 234 aa13.61□□□□□ -0.23
SNX13-203ENST00000428135 TRHP20396 242 aaPredicted RBP13.6□□□□□ -0.23
SNX13-203ENST00000428135 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.6□□□□□ -0.23
SNX13-203ENST00000428135 PLEKHG5O94827 1062 aa13.6□□□□□ -0.23
SNX13-203ENST00000428135 CHIC2Q9UKJ5 165 aa13.58□□□□□ -0.24
SNX13-203ENST00000428135 NACADO15069 1562 aa13.57□□□□□ -0.24
SNX13-203ENST00000428135 CANXP27824 592 aaKnown RBP13.57□□□□□ -0.24
SNX13-203ENST00000428135 BAZ1BQ9UIG0 1483 aaKnown RBP13.54□□□□□ -0.24
SNX13-203ENST00000428135 ZBTB47Q9UFB7 747 aaPredicted RBP13.54□□□□□ -0.24
SNX13-203ENST00000428135 CDK11AQ9UQ88 783 aaPredicted RBP13.52□□□□□ -0.25
SNX13-203ENST00000428135 SCAF1Q9H7N4 1312 aaKnown RBP13.5□□□□□ -0.25
SNX13-203ENST00000428135 NEFMP07197 916 aa13.5□□□□□ -0.25
SNX13-203ENST00000428135 SALL2Q9Y467 1007 aaPredicted RBP13.5□□□□□ -0.25
SNX13-203ENST00000428135 ARID4BQ4LE39 1312 aaPredicted RBP13.45□□□□□ -0.26
SNX13-203ENST00000428135 CECR2Q9BXF3 1484 aa13.45□□□□□ -0.26
SNX13-203ENST00000428135 A0A0G2JS52 829 aa13.45□□□□□ -0.26
SNX13-203ENST00000428135 KDM2AQ9Y2K7 1162 aa13.44□□□□□ -0.26
SNX13-203ENST00000428135 RTL5Q5HYW3 569 aaPredicted RBP13.43□□□□□ -0.26
SNX13-203ENST00000428135 GTF3C3Q9Y5Q9 886 aa13.43□□□□□ -0.26
SNX13-203ENST00000428135 ZBTB7CA1YPR0 619 aa13.41□□□□□ -0.26
SNX13-203ENST00000428135 RSF1Q96T23 1441 aaPredicted RBP13.4□□□□□ -0.26
SNX13-203ENST00000428135 HIRIP3Q9BW71 556 aaPredicted RBP13.38□□□□□ -0.27
SNX13-203ENST00000428135 FAM9BQ8IZU0 186 aa13.36□□□□□ -0.27
SNX13-203ENST00000428135 TONSLQ96HA7 1378 aa13.35□□□□□ -0.27
SNX13-203ENST00000428135 NPM2Q86SE8 214 aaKnown RBP13.34□□□□□ -0.27
SNX13-203ENST00000428135 DDX10Q13206 875 aaKnown RBP13.34□□□□□ -0.27
SNX13-203ENST00000428135 SENP3-EIF4A1A0A087X0R7 540 aa13.32□□□□□ -0.28
SNX13-203ENST00000428135 C14orf37Q86TY3 774 aa13.32□□□□□ -0.28
SNX13-203ENST00000428135 RRP7BPQ9NSQ0 103 aa13.31□□□□□ -0.28
SNX13-203ENST00000428135 TSPY4P0CV99 314 aa13.3□□□□□ -0.28
SNX13-203ENST00000428135 TSPY10P0CW01 314 aa13.3□□□□□ -0.28
SNX13-203ENST00000428135 MLECQ14165 292 aa13.3□□□□□ -0.28
SNX13-203ENST00000428135 PLEKHD1A6NEE1 506 aa13.27□□□□□ -0.29
SNX13-203ENST00000428135 MTUS2Q5JR59 1369 aa13.27□□□□□ -0.29
SNX13-203ENST00000428135 RGL3Q3MIN7 710 aa13.25□□□□□ -0.29
SNX13-203ENST00000428135 HNRNPUQ00839 825 aaKnown RBP eCLIP13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms