RNA–Protein interactions for RNA: ENST00000425518.5

SMARCC1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 2

Gene SMARCC1, Length 3,827 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-202ENST00000425518 LRRIQ1Q96JM4 1722 aa10.28□□□□□ -0.76
SMARCC1-202ENST00000425518 KDM6BO15054 1643 aa10.28□□□□□ -0.76
SMARCC1-202ENST00000425518 BCL11AQ9H165 835 aa10.28□□□□□ -0.76
SMARCC1-202ENST00000425518 ANKRD30BQ9BXX2 1392 aa10.27□□□□□ -0.76
SMARCC1-202ENST00000425518 ERICH6BQ5W0A0 696 aa10.27□□□□□ -0.76
SMARCC1-202ENST00000425518 TCOF1Q13428 1488 aaKnown RBP10.27□□□□□ -0.77
SMARCC1-202ENST00000425518 FANCIQ9NVI1 1328 aa10.27□□□□□ -0.77
SMARCC1-202ENST00000425518 NCOA1Q15788 1441 aa10.27□□□□□ -0.77
SMARCC1-202ENST00000425518 ZBED9Q6R2W3 1325 aa10.27□□□□□ -0.77
SMARCC1-202ENST00000425518 ABCA5Q8WWZ7 1642 aa10.26□□□□□ -0.77
SMARCC1-202ENST00000425518 MIA2Q96PC5 1412 aa10.26□□□□□ -0.77
SMARCC1-202ENST00000425518 ARHGEF11O15085 1522 aa10.26□□□□□ -0.77
SMARCC1-202ENST00000425518 KIF21AQ7Z4S6 1674 aa10.26□□□□□ -0.77
SMARCC1-202ENST00000425518 THOC2Q8NI27 1593 aaKnown RBP10.26□□□□□ -0.77
SMARCC1-202ENST00000425518 CFDP1Q9UEE9 299 aaPredicted RBP10.25□□□□□ -0.77
SMARCC1-202ENST00000425518 LAMC3Q9Y6N6 1575 aa10.25□□□□□ -0.77
SMARCC1-202ENST00000425518 AKNAQ7Z591 1439 aa10.24□□□□□ -0.77
SMARCC1-202ENST00000425518 ABCC5O15440 1437 aa10.24□□□□□ -0.77
SMARCC1-202ENST00000425518 DAPK1P53355 1430 aa10.24□□□□□ -0.77
SMARCC1-202ENST00000425518 PKD2Q13563 968 aa10.23□□□□□ -0.77
SMARCC1-202ENST00000425518 HECW1Q76N89 1606 aa10.23□□□□□ -0.77
SMARCC1-202ENST00000425518 RPRD2Q5VT52 1461 aaKnown RBP10.23□□□□□ -0.77
SMARCC1-202ENST00000425518 KDM2AQ9Y2K7 1162 aa10.22□□□□□ -0.77
SMARCC1-202ENST00000425518 FBLN2P98095 1184 aa10.21□□□□□ -0.77
SMARCC1-202ENST00000425518 ERCC6Q03468 1493 aa10.21□□□□□ -0.78
SMARCC1-202ENST00000425518 TMC1Q8TDI8 760 aa10.21□□□□□ -0.78
SMARCC1-202ENST00000425518 ROCK1Q13464 1354 aa10.21□□□□□ -0.78
SMARCC1-202ENST00000425518 IQGAP2Q13576 1575 aa10.21□□□□□ -0.78
SMARCC1-202ENST00000425518 CCDC136Q96JN2 1154 aa10.2□□□□□ -0.78
SMARCC1-202ENST00000425518 SPATA31E1Q6ZUB1 1445 aa10.19□□□□□ -0.78
SMARCC1-202ENST00000425518 GCC2Q8IWJ2 1684 aa10.19□□□□□ -0.78
SMARCC1-202ENST00000425518 USP47Q96K76 1375 aa10.19□□□□□ -0.78
SMARCC1-202ENST00000425518 CARD11Q9BXL7 1154 aa10.18□□□□□ -0.78
SMARCC1-202ENST00000425518 NUDCQ9Y266 331 aa10.18□□□□□ -0.78
SMARCC1-202ENST00000425518 SALL2Q9Y467 1007 aaPredicted RBP10.18□□□□□ -0.78
SMARCC1-202ENST00000425518 TEX14Q8IWB6 1497 aa10.18□□□□□ -0.78
SMARCC1-202ENST00000425518 PRG4Q92954 1404 aaPredicted RBP10.18□□□□□ -0.78
SMARCC1-202ENST00000425518 WDR62O43379 1518 aa10.17□□□□□ -0.78
SMARCC1-202ENST00000425518 TARBP1Q13395 1621 aaKnown RBP10.17□□□□□ -0.78
SMARCC1-202ENST00000425518 CHMP7Q8WUX9 453 aaPredicted RBP10.16□□□□□ -0.78
SMARCC1-202ENST00000425518 DHX29Q7Z478 1369 aaKnown RBP10.15□□□□□ -0.78
SMARCC1-202ENST00000425518 NBR1Q14596 966 aa10.15□□□□□ -0.78
SMARCC1-202ENST00000425518 PNISRQ8TF01 805 aaKnown RBP10.15□□□□□ -0.78
SMARCC1-202ENST00000425518 ZNF608Q9ULD9 1512 aaPredicted RBP10.15□□□□□ -0.79
SMARCC1-202ENST00000425518 NUP153P49790 1475 aaKnown RBP10.15□□□□□ -0.79
SMARCC1-202ENST00000425518 ST20-MTHFSA0A0A6YYL1 179 aa10.14□□□□□ -0.79
SMARCC1-202ENST00000425518 NUP155O75694 1391 aa10.14□□□□□ -0.79
SMARCC1-202ENST00000425518 DCAF11Q8TEB1 546 aa10.14□□□□□ -0.79
SMARCC1-202ENST00000425518 PZPP20742 1482 aa10.14□□□□□ -0.79
SMARCC1-202ENST00000425518 SMG6Q86US8 1419 aaKnown RBP10.13□□□□□ -0.79
SMARCC1-202ENST00000425518 KIAA1107Q9UPP5 1409 aa10.13□□□□□ -0.79
SMARCC1-202ENST00000425518 NOP58Q9Y2X3 529 aaKnown RBP10.13□□□□□ -0.79
SMARCC1-202ENST00000425518 TSPY4P0CV99 314 aa10.13□□□□□ -0.79
SMARCC1-202ENST00000425518 TSPY10P0CW01 314 aa10.13□□□□□ -0.79
SMARCC1-202ENST00000425518 ANKRD30AQ9BXX3 1397 aa10.13□□□□□ -0.79
SMARCC1-202ENST00000425518 PLEKHD1A6NEE1 506 aa10.12□□□□□ -0.79
SMARCC1-202ENST00000425518 PAK3O75914 559 aaPredicted RBP10.12□□□□□ -0.79
SMARCC1-202ENST00000425518 KIAA0586Q9BVV6 1533 aa10.12□□□□□ -0.79
SMARCC1-202ENST00000425518 ADAMTS12P58397 1594 aa10.12□□□□□ -0.79
SMARCC1-202ENST00000425518 DISP1Q96F81 1524 aa10.12□□□□□ -0.79
SMARCC1-202ENST00000425518 TROQ12816 1431 aaPredicted RBP10.11□□□□□ -0.79
SMARCC1-202ENST00000425518 DNMT1P26358 1616 aaKnown RBP10.11□□□□□ -0.79
SMARCC1-202ENST00000425518 CAMSAP2Q08AD1 1489 aa10.11□□□□□ -0.79
SMARCC1-202ENST00000425518 RGL3Q3MIN7 710 aa10.11□□□□□ -0.79
SMARCC1-202ENST00000425518 ANKRD50Q9ULJ7 1429 aa10.1□□□□□ -0.79
SMARCC1-202ENST00000425518 ANP32AP39687 249 aaKnown RBP10.1□□□□□ -0.79
SMARCC1-202ENST00000425518 PLB1Q6P1J6 1458 aa10.1□□□□□ -0.79
SMARCC1-202ENST00000425518 HNRNPMP52272 730 aaKnown RBP eCLIP10.1□□□□□ -0.795e-7■■■■□ 24.8
SMARCC1-202ENST00000425518 GPATCH8Q9UKJ3 1502 aaKnown RBP10.1□□□□□ -0.79
SMARCC1-202ENST00000425518 JPH4Q96JJ6 628 aa10.1□□□□□ -0.79
SMARCC1-202ENST00000425518 MRC2Q9UBG0 1479 aa10.09□□□□□ -0.79
SMARCC1-202ENST00000425518 DEKP35659 375 aaKnown RBP10.09□□□□□ -0.79
SMARCC1-202ENST00000425518 PBRM1Q86U86 1689 aa10.09□□□□□ -0.79
SMARCC1-202ENST00000425518 ARID4BQ4LE39 1312 aaPredicted RBP10.09□□□□□ -0.79
SMARCC1-202ENST00000425518 NPM2Q86SE8 214 aaKnown RBP10.09□□□□□ -0.79
SMARCC1-202ENST00000425518 RNF123Q5XPI4 1314 aa10.08□□□□□ -0.8
SMARCC1-202ENST00000425518 KIF15Q9NS87 1388 aa10.08□□□□□ -0.8
SMARCC1-202ENST00000425518 EXOC6Q8TAG9 804 aa10.07□□□□□ -0.8
SMARCC1-202ENST00000425518 ZBTB47Q9UFB7 747 aaPredicted RBP10.07□□□□□ -0.8
SMARCC1-202ENST00000425518 ROCK2O75116 1388 aaKnown RBP10.07□□□□□ -0.8
SMARCC1-202ENST00000425518 KIAA0556O60303 1618 aa10.07□□□□□ -0.8
SMARCC1-202ENST00000425518 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.07□□□□□ -0.82e-8■■■□□ 15.3
SMARCC1-202ENST00000425518 MYBBP1AQ9BQG0 1328 aaKnown RBP10.07□□□□□ -0.8
SMARCC1-202ENST00000425518 RALBP1Q15311 655 aa10.07□□□□□ -0.8
SMARCC1-202ENST00000425518 IFT140Q96RY7 1462 aa10.06□□□□□ -0.8
SMARCC1-202ENST00000425518 RAPGEF6Q8TEU7 1601 aa10.06□□□□□ -0.8
SMARCC1-202ENST00000425518 IPO9Q96P70 1041 aaKnown RBP10.06□□□□□ -0.8
SMARCC1-202ENST00000425518 RCAN3Q9UKA8 241 aa10.06□□□□□ -0.8
SMARCC1-202ENST00000425518 GRIN2AQ12879 1464 aa10.06□□□□□ -0.8
SMARCC1-202ENST00000425518 BCORL1Q5H9F3 1711 aa10.05□□□□□ -0.8
SMARCC1-202ENST00000425518 MBD5Q9P267 1494 aa10.05□□□□□ -0.8
SMARCC1-202ENST00000425518 RRP1P56182 461 aaKnown RBP10.05□□□□□ -0.8
SMARCC1-202ENST00000425518 CC2D1BQ5T0F9 858 aaKnown RBP10.05□□□□□ -0.8
SMARCC1-202ENST00000425518 MYT1LQ9UL68 1186 aa10.05□□□□□ -0.8
SMARCC1-202ENST00000425518 NBPF1Q3BBV0 1214 aa10.04□□□□□ -0.8
SMARCC1-202ENST00000425518 CDCA7LQ96GN5 454 aa10.04□□□□□ -0.8
SMARCC1-202ENST00000425518 BRD4O60885 1362 aaPredicted RBP10.03□□□□□ -0.8
SMARCC1-202ENST00000425518 C9orf84Q5VXU9 1444 aa10.03□□□□□ -0.8
SMARCC1-202ENST00000425518 CARMIL2Q6F5E8 1435 aa10.03□□□□□ -0.8
SMARCC1-202ENST00000425518 NLRP13Q86W25 1043 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms