RNA–Protein interactions for RNA: ENST00000425518.5

SMARCC1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 2

Gene SMARCC1, Length 3,827 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-202ENST00000425518 NISCHQ9Y2I1 1504 aa14.95□□□□□ -0.02
SMARCC1-202ENST00000425518 SHROOM4Q9ULL8 1493 aa13.15□□□□□ -0.3
SMARCC1-202ENST00000425518 SUPT5HO00267 1087 aaKnown RBP13.01□□□□□ -0.33
SMARCC1-202ENST00000425518 DCAF8L2P0C7V8 631 aa12.77□□□□□ -0.36
SMARCC1-202ENST00000425518 ZCCHC6Q5VYS8 1495 aaKnown RBP12.64□□□□□ -0.39
SMARCC1-202ENST00000425518 CHIC1Q5VXU3 224 aa12.59□□□□□ -0.39
SMARCC1-202ENST00000425518 MYO15BQ96JP2 1530 aa12.49□□□□□ -0.41
SMARCC1-202ENST00000425518 CCDC180Q9P1Z9 1646 aa12.46□□□□□ -0.41
SMARCC1-202ENST00000425518 PCGF6Q9BYE7 350 aa12.46□□□□□ -0.42
SMARCC1-202ENST00000425518 HRCP23327 699 aa12.45□□□□□ -0.42
SMARCC1-202ENST00000425518 LOC105371045A0A1W2PR82 267 aa12.33□□□□□ -0.44
SMARCC1-202ENST00000425518 PPARGC1BQ86YN6 1023 aaKnown RBP12.28□□□□□ -0.44
SMARCC1-202ENST00000425518 DCAF1Q9Y4B6 1507 aa12.14□□□□□ -0.47
SMARCC1-202ENST00000425518 TRIM26Q12899 539 aaPredicted RBP12.08□□□□□ -0.48
SMARCC1-202ENST00000425518 FAM9AQ8IZU1 332 aaPredicted RBP12.06□□□□□ -0.48
SMARCC1-202ENST00000425518 TRIM41Q8WV44 630 aa12.04□□□□□ -0.48
SMARCC1-202ENST00000425518 EHMT2Q96KQ7 1210 aa12.04□□□□□ -0.48
SMARCC1-202ENST00000425518 RSF1Q96T23 1441 aaPredicted RBP11.96□□□□□ -0.49
SMARCC1-202ENST00000425518 SCRIBQ14160 1630 aa11.93□□□□□ -0.5
SMARCC1-202ENST00000425518 ABCC9O60706 1549 aa11.91□□□□□ -0.5
SMARCC1-202ENST00000425518 ZEB1P37275 1124 aaPredicted RBP11.85□□□□□ -0.51
SMARCC1-202ENST00000425518 RB1CC1Q8TDY2 1594 aa11.8□□□□□ -0.52
SMARCC1-202ENST00000425518 CECR2Q9BXF3 1484 aa11.75□□□□□ -0.53
SMARCC1-202ENST00000425518 MROH2BQ7Z745 1585 aa11.68□□□□□ -0.54
SMARCC1-202ENST00000425518 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.67□□□□□ -0.54
SMARCC1-202ENST00000425518 TTBK1Q5TCY1 1321 aaPredicted RBP11.66□□□□□ -0.54
SMARCC1-202ENST00000425518 CCER1Q8TC90 406 aaPredicted RBP11.64□□□□□ -0.55
SMARCC1-202ENST00000425518 NACADO15069 1562 aa11.6□□□□□ -0.55
SMARCC1-202ENST00000425518 WIZO95785 1651 aa11.59□□□□□ -0.55
SMARCC1-202ENST00000425518 SCAF1Q9H7N4 1312 aaKnown RBP11.59□□□□□ -0.55
SMARCC1-202ENST00000425518 UBTFP17480 764 aaKnown RBP11.49□□□□□ -0.57
SMARCC1-202ENST00000425518 CCDC88BA6NC98 1476 aa11.46□□□□□ -0.58
SMARCC1-202ENST00000425518 DIEXFQ68CQ4 756 aaKnown RBP11.45□□□□□ -0.58
SMARCC1-202ENST00000425518 BAZ1AQ9NRL2 1556 aaPredicted RBP11.45□□□□□ -0.58
SMARCC1-202ENST00000425518 ABCC8Q09428 1581 aa11.45□□□□□ -0.58
SMARCC1-202ENST00000425518 UNC13AQ9UPW8 1703 aa11.45□□□□□ -0.58
SMARCC1-202ENST00000425518 PELP1Q8IZL8 1130 aaKnown RBP11.45□□□□□ -0.58
SMARCC1-202ENST00000425518 SOGA1O94964 1423 aa11.43□□□□□ -0.58
SMARCC1-202ENST00000425518 NEUROD1Q13562 356 aa11.43□□□□□ -0.58
SMARCC1-202ENST00000425518 CSRNP3Q8WYN3 585 aa11.43□□□□□ -0.58
SMARCC1-202ENST00000425518 ACIN1Q9UKV3 1341 aaKnown RBP11.42□□□□□ -0.58
SMARCC1-202ENST00000425518 CEP162Q5TB80 1403 aa11.41□□□□□ -0.58
SMARCC1-202ENST00000425518 PABPN1Q86U42 306 aaKnown RBP eCLIP11.4□□□□□ -0.59
SMARCC1-202ENST00000425518 TNIKQ9UKE5 1360 aa11.37□□□□□ -0.59
SMARCC1-202ENST00000425518 TOP2AP11388 1531 aaKnown RBP11.36□□□□□ -0.59
SMARCC1-202ENST00000425518 CENPBP07199 599 aaPredicted RBP11.36□□□□□ -0.59
SMARCC1-202ENST00000425518 EIF4G1Q04637 1599 aaKnown RBP11.36□□□□□ -0.59
SMARCC1-202ENST00000425518 RUSC2Q8N2Y8 1516 aa11.36□□□□□ -0.59
SMARCC1-202ENST00000425518 WRNQ14191 1432 aaPredicted RBP eCLIP11.35□□□□□ -0.594e-9■■□□□ 14.1
SMARCC1-202ENST00000425518 HNRNPUL2Q1KMD3 747 aaKnown RBP11.35□□□□□ -0.59
SMARCC1-202ENST00000425518 GTF3C3Q9Y5Q9 886 aa11.35□□□□□ -0.59
SMARCC1-202ENST00000425518 RANGAP1P46060 587 aaPredicted RBP11.34□□□□□ -0.59
SMARCC1-202ENST00000425518 SMARCA2P51531 1590 aa11.32□□□□□ -0.6
SMARCC1-202ENST00000425518 SMARCA4P51532 1647 aa11.31□□□□□ -0.6
SMARCC1-202ENST00000425518 ZNF316A6NFI3 1004 aaPredicted RBP11.3□□□□□ -0.6
SMARCC1-202ENST00000425518 YTHDC1Q96MU7 727 aaKnown RBP11.3□□□□□ -0.6
SMARCC1-202ENST00000425518 EEA1Q15075 1411 aa11.27□□□□□ -0.6
SMARCC1-202ENST00000425518 APLP2Q06481 763 aa11.27□□□□□ -0.61
SMARCC1-202ENST00000425518 GOLGA3Q08378 1498 aa11.25□□□□□ -0.61
SMARCC1-202ENST00000425518 BICRAQ9NZM4 1560 aa11.21□□□□□ -0.61
SMARCC1-202ENST00000425518 MIER1Q8N108 512 aa11.2□□□□□ -0.62
SMARCC1-202ENST00000425518 CLIP1P30622 1438 aa11.19□□□□□ -0.62
SMARCC1-202ENST00000425518 CEP164Q9UPV0 1460 aa11.16□□□□□ -0.62
SMARCC1-202ENST00000425518 VPS8Q8N3P4 1428 aa11.11□□□□□ -0.63
SMARCC1-202ENST00000425518 SYNJ1O43426 1573 aa11.11□□□□□ -0.63
SMARCC1-202ENST00000425518 RAPGEF2Q9Y4G8 1499 aa11.11□□□□□ -0.63
SMARCC1-202ENST00000425518 ATAD2BQ9ULI0 1458 aa11.07□□□□□ -0.64
SMARCC1-202ENST00000425518 BAZ1BQ9UIG0 1483 aaKnown RBP11.07□□□□□ -0.64
SMARCC1-202ENST00000425518 KIF21BO75037 1637 aa11.04□□□□□ -0.64
SMARCC1-202ENST00000425518 KANK4Q5T7N3 995 aaPredicted RBP11.04□□□□□ -0.64
SMARCC1-202ENST00000425518 ITGAEP38570 1179 aa11.03□□□□□ -0.64
SMARCC1-202ENST00000425518 PEG3Q9GZU2 1588 aa11.01□□□□□ -0.65
SMARCC1-202ENST00000425518 DHX57Q6P158 1386 aaKnown RBP10.97□□□□□ -0.65
SMARCC1-202ENST00000425518 CLSPNQ9HAW4 1339 aa10.93□□□□□ -0.66
SMARCC1-202ENST00000425518 ARAP1Q96P48 1450 aa10.91□□□□□ -0.66
SMARCC1-202ENST00000425518 PRXQ9BXM0 1461 aa10.91□□□□□ -0.66
SMARCC1-202ENST00000425518 TOP2BQ02880 1626 aa10.91□□□□□ -0.66
SMARCC1-202ENST00000425518 KIF27Q86VH2 1401 aa10.89□□□□□ -0.67
SMARCC1-202ENST00000425518 ATP1B4Q9UN42 357 aaPredicted RBP10.89□□□□□ -0.67
SMARCC1-202ENST00000425518 CCNB3Q8WWL7 1395 aa10.88□□□□□ -0.67
SMARCC1-202ENST00000425518 MYT1Q01538 1121 aa10.87□□□□□ -0.67
SMARCC1-202ENST00000425518 ERICH3Q5RHP9 1530 aa10.85□□□□□ -0.67
SMARCC1-202ENST00000425518 SUPT16HQ9Y5B9 1047 aaKnown RBP10.85□□□□□ -0.67
SMARCC1-202ENST00000425518 P3H3Q8IVL6 736 aa10.85□□□□□ -0.67
SMARCC1-202ENST00000425518 FAM50AQ14320 339 aaKnown RBP10.84□□□□□ -0.67
SMARCC1-202ENST00000425518 RRBP1Q9P2E9 1410 aaKnown RBP10.84□□□□□ -0.67
SMARCC1-202ENST00000425518 CUX1P39880 1505 aa10.84□□□□□ -0.67
SMARCC1-202ENST00000425518 KCNH8Q96L42 1107 aa10.84□□□□□ -0.67
SMARCC1-202ENST00000425518 DNAJC5BQ9UF47 199 aa10.83□□□□□ -0.68
SMARCC1-202ENST00000425518 ARHGAP35Q9NRY4 1499 aa10.82□□□□□ -0.68
SMARCC1-202ENST00000425518 RAB3GAP2Q9H2M9 1393 aa10.81□□□□□ -0.68
SMARCC1-202ENST00000425518 SIN3AQ96ST3 1273 aa10.81□□□□□ -0.68
SMARCC1-202ENST00000425518 BIVM-ERCC5R4GMW8 1640 aa10.81□□□□□ -0.68
SMARCC1-202ENST00000425518 DDX10Q13206 875 aaKnown RBP10.8□□□□□ -0.68
SMARCC1-202ENST00000425518 NCAPD3P42695 1498 aa10.8□□□□□ -0.68
SMARCC1-202ENST00000425518 IGF1RP08069 1367 aa10.79□□□□□ -0.68
SMARCC1-202ENST00000425518 CUX2O14529 1486 aa10.78□□□□□ -0.68
SMARCC1-202ENST00000425518 HIRIP3Q9BW71 556 aaPredicted RBP10.78□□□□□ -0.68
SMARCC1-202ENST00000425518 BCANQ96GW7 911 aa10.77□□□□□ -0.69
SMARCC1-202ENST00000425518 CARMIL1Q5VZK9 1371 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms