RNA–Protein interactions for RNA: ENST00000424478.5

PRPF39-202, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,174 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-202ENST00000424478 ABCA9Q8IUA7 1624 aa20.51■□□□□ 0.87
PRPF39-202ENST00000424478 CD109Q6YHK3 1445 aa20.5■□□□□ 0.87
PRPF39-202ENST00000424478 PTPN23Q9H3S7 1636 aa20.49■□□□□ 0.87
PRPF39-202ENST00000424478 KIF13AQ9H1H9 1805 aa20.49■□□□□ 0.87
PRPF39-202ENST00000424478 PREX2Q70Z35 1606 aa20.49■□□□□ 0.87
PRPF39-202ENST00000424478 RRBP1Q9P2E9 1410 aaKnown RBP20.48■□□□□ 0.87
PRPF39-202ENST00000424478 HNRNPMP52272 730 aaKnown RBP eCLIP20.48■□□□□ 0.87
PRPF39-202ENST00000424478 ITSN2Q9NZM3 1697 aa20.47■□□□□ 0.87
PRPF39-202ENST00000424478 PLCH2O75038 1416 aa20.46■□□□□ 0.87
PRPF39-202ENST00000424478 CAMSAP2Q08AD1 1489 aa20.45■□□□□ 0.86
PRPF39-202ENST00000424478 CHIC2Q9UKJ5 165 aa20.45■□□□□ 0.86
PRPF39-202ENST00000424478 SAMD9LQ8IVG5 1584 aa20.44■□□□□ 0.86
PRPF39-202ENST00000424478 FANCAO15360 1455 aa20.43■□□□□ 0.86
PRPF39-202ENST00000424478 MAP3K4Q9Y6R4 1608 aa20.42■□□□□ 0.86
PRPF39-202ENST00000424478 EFCAB2Q5VUJ9 269 aa20.42■□□□□ 0.86
PRPF39-202ENST00000424478 MIA2Q96PC5 1412 aa20.41■□□□□ 0.86
PRPF39-202ENST00000424478 PTPRKQ15262 1439 aa20.4■□□□□ 0.86
PRPF39-202ENST00000424478 SYCP2Q9BX26 1530 aa20.39■□□□□ 0.86
PRPF39-202ENST00000424478 ARHGEF12Q9NZN5 1544 aa20.39■□□□□ 0.85
PRPF39-202ENST00000424478 GLI2P10070 1586 aa20.38■□□□□ 0.85
PRPF39-202ENST00000424478 PPRC1Q5VV67 1664 aaKnown RBP20.36■□□□□ 0.85
PRPF39-202ENST00000424478 AFAP1Q8N556 730 aa20.36■□□□□ 0.85
PRPF39-202ENST00000424478 TCOF1Q13428 1488 aaKnown RBP20.36■□□□□ 0.85
PRPF39-202ENST00000424478 RAPGEF3O95398 923 aa20.34■□□□□ 0.85
PRPF39-202ENST00000424478 AKNAQ7Z591 1439 aa20.34■□□□□ 0.85
PRPF39-202ENST00000424478 ADGRL1O94910 1474 aa20.33■□□□□ 0.85
PRPF39-202ENST00000424478 TRAPPC8Q9Y2L5 1435 aa20.33■□□□□ 0.85
PRPF39-202ENST00000424478 SCAPERQ9BY12 1400 aa20.33■□□□□ 0.84
PRPF39-202ENST00000424478 RRP7BPQ9NSQ0 103 aa20.33■□□□□ 0.84
PRPF39-202ENST00000424478 ABCC5O15440 1437 aa20.33■□□□□ 0.84
PRPF39-202ENST00000424478 MBD5Q9P267 1494 aa20.31■□□□□ 0.84
PRPF39-202ENST00000424478 DAPK1P53355 1430 aa20.31■□□□□ 0.84
PRPF39-202ENST00000424478 ABCC1P33527 1531 aa20.31■□□□□ 0.84
PRPF39-202ENST00000424478 MYT1LQ9UL68 1186 aa20.3■□□□□ 0.84
PRPF39-202ENST00000424478 DNMT1P26358 1616 aaKnown RBP20.28■□□□□ 0.84
PRPF39-202ENST00000424478 ARAP3Q8WWN8 1544 aa20.28■□□□□ 0.84
PRPF39-202ENST00000424478 COL17A1Q9UMD9 1497 aaPredicted RBP20.25■□□□□ 0.83
PRPF39-202ENST00000424478 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.25■□□□□ 0.83
PRPF39-202ENST00000424478 CCDC141Q6ZP82 1450 aa20.24■□□□□ 0.83
PRPF39-202ENST00000424478 TSPY4P0CV99 314 aa20.24■□□□□ 0.83
PRPF39-202ENST00000424478 TSPY10P0CW01 314 aa20.24■□□□□ 0.83
PRPF39-202ENST00000424478 C9orf84Q5VXU9 1444 aa20.22■□□□□ 0.83
PRPF39-202ENST00000424478 KIAA1107Q9UPP5 1409 aa20.22■□□□□ 0.83
PRPF39-202ENST00000424478 NEO1Q92859 1461 aa20.22■□□□□ 0.83
PRPF39-202ENST00000424478 CROCC2H7BZ55 1655 aa20.21■□□□□ 0.83
PRPF39-202ENST00000424478 TEX14Q8IWB6 1497 aa20.21■□□□□ 0.83
PRPF39-202ENST00000424478 CFAP74Q9C0B2 1584 aa20.2■□□□□ 0.82
PRPF39-202ENST00000424478 PLEKHH2Q8IVE3 1493 aa20.2■□□□□ 0.82
PRPF39-202ENST00000424478 SPAG9O60271 1321 aaKnown RBP20.19■□□□□ 0.82
PRPF39-202ENST00000424478 ARHGEF5Q12774 1597 aa20.19■□□□□ 0.82
PRPF39-202ENST00000424478 DENND4BO75064 1496 aaPredicted RBP20.18■□□□□ 0.82
PRPF39-202ENST00000424478 POGZQ7Z3K3 1410 aa20.18■□□□□ 0.82
PRPF39-202ENST00000424478 KDM6BO15054 1643 aa20.16■□□□□ 0.82
PRPF39-202ENST00000424478 FRMPD1Q5SYB0 1578 aa20.15■□□□□ 0.82
PRPF39-202ENST00000424478 RICTORQ6R327 1708 aa20.15■□□□□ 0.82
PRPF39-202ENST00000424478 ZNF518AQ6AHZ1 1483 aa20.14■□□□□ 0.81
PRPF39-202ENST00000424478 NCOA1Q15788 1441 aa20.14■□□□□ 0.81
PRPF39-202ENST00000424478 NAIPQ13075 1403 aa20.13■□□□□ 0.81
PRPF39-202ENST00000424478 RAB3GAP2Q9H2M9 1393 aa20.13■□□□□ 0.81
PRPF39-202ENST00000424478 KIF15Q9NS87 1388 aa20.12■□□□□ 0.81
PRPF39-202ENST00000424478 ZFYVE16Q7Z3T8 1539 aa20.12■□□□□ 0.81
PRPF39-202ENST00000424478 YEATS2Q9ULM3 1422 aa20.12■□□□□ 0.81
PRPF39-202ENST00000424478 RSPH4AQ5TD94 716 aa20.11■□□□□ 0.81
PRPF39-202ENST00000424478 ADGBQ8N7X0 1667 aa20.11■□□□□ 0.81
PRPF39-202ENST00000424478 ANKRD30AQ9BXX3 1397 aa20.11■□□□□ 0.81
PRPF39-202ENST00000424478 ATP7AQ04656 1500 aa20.1■□□□□ 0.81
PRPF39-202ENST00000424478 KIDINS220Q9ULH0 1771 aa20.1■□□□□ 0.81
PRPF39-202ENST00000424478 SHANK2Q9UPX8 1470 aa20.1■□□□□ 0.81
PRPF39-202ENST00000424478 SETD5Q9C0A6 1442 aa20.09■□□□□ 0.81
PRPF39-202ENST00000424478 HFM1A2PYH4 1435 aa20.09■□□□□ 0.81
PRPF39-202ENST00000424478 KDM5CP41229 1560 aa20.08■□□□□ 0.81
PRPF39-202ENST00000424478 INO80Q9ULG1 1556 aaPredicted RBP20.08■□□□□ 0.8
PRPF39-202ENST00000424478 HECW2Q9P2P5 1572 aa20.06■□□□□ 0.8
PRPF39-202ENST00000424478 ADGRL2O95490 1459 aa20.06■□□□□ 0.8
PRPF39-202ENST00000424478 ROCK1Q13464 1354 aa20.05■□□□□ 0.8
PRPF39-202ENST00000424478 ABCA6Q8N139 1617 aa20.05■□□□□ 0.8
PRPF39-202ENST00000424478 MAST1Q9Y2H9 1570 aa20.05■□□□□ 0.8
PRPF39-202ENST00000424478 TRIM52Q96A61 297 aa20.03■□□□□ 0.8
PRPF39-202ENST00000424478 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.03■□□□□ 0.82e-6■■□□□ 11.5
PRPF39-202ENST00000424478 GCC2Q8IWJ2 1684 aa20.03■□□□□ 0.8
PRPF39-202ENST00000424478 ANKRD50Q9ULJ7 1429 aa20.03■□□□□ 0.8
PRPF39-202ENST00000424478 MLH3Q9UHC1 1453 aa20.01■□□□□ 0.79
PRPF39-202ENST00000424478 PLXNC1O60486 1568 aa20■□□□□ 0.79
PRPF39-202ENST00000424478 RTEL1-TNFRSF6BF6WH68 1400 aa20■□□□□ 0.79
PRPF39-202ENST00000424478 DIP2CQ9Y2E4 1556 aa19.99■□□□□ 0.79
PRPF39-202ENST00000424478 KIF3BO15066 747 aa19.99■□□□□ 0.79
PRPF39-202ENST00000424478 SIGLEC1Q9BZZ2 1709 aa19.97■□□□□ 0.79
PRPF39-202ENST00000424478 MLECQ14165 292 aa19.97■□□□□ 0.79
PRPF39-202ENST00000424478 ZMYM4Q5VZL5 1548 aa19.96■□□□□ 0.79
PRPF39-202ENST00000424478 A2MP01023 1474 aa19.96■□□□□ 0.79
PRPF39-202ENST00000424478 FOXD1Q16676 465 aa19.95■□□□□ 0.78
PRPF39-202ENST00000424478 GGT6Q6P531 493 aa19.95■□□□□ 0.78
PRPF39-202ENST00000424478 DUOX2Q9NRD8 1548 aa19.95■□□□□ 0.78
PRPF39-202ENST00000424478 CCER1Q8TC90 406 aaPredicted RBP19.94■□□□□ 0.78
PRPF39-202ENST00000424478 DHX29Q7Z478 1369 aaKnown RBP19.93■□□□□ 0.78
PRPF39-202ENST00000424478 ARID4BQ4LE39 1312 aaPredicted RBP19.91■□□□□ 0.78
PRPF39-202ENST00000424478 NUP155O75694 1391 aa19.9■□□□□ 0.78
PRPF39-202ENST00000424478 ARHGEF40Q8TER5 1519 aa19.89■□□□□ 0.78
PRPF39-202ENST00000424478 ATP10AO60312 1499 aa19.89■□□□□ 0.77
PRPF39-202ENST00000424478 DHX57Q6P158 1386 aaKnown RBP19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms