RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 FAM69CQ0P6D2 419 aa21.72■■□□□ 1.07
SF3B1-204ENST00000414963 MYO5CQ9NQX4 1742 aa21.72■■□□□ 1.07
SF3B1-204ENST00000414963 PTPN23Q9H3S7 1636 aa21.71■■□□□ 1.07
SF3B1-204ENST00000414963 EFCAB2Q5VUJ9 269 aa21.71■■□□□ 1.07
SF3B1-204ENST00000414963 CDC42BPBQ9Y5S2 1711 aa21.7■■□□□ 1.06
SF3B1-204ENST00000414963 FAM50AQ14320 339 aaKnown RBP21.68■■□□□ 1.06
SF3B1-204ENST00000414963 ZNF644Q9H582 1327 aaPredicted RBP21.68■■□□□ 1.06
SF3B1-204ENST00000414963 ARHGAP5Q13017 1502 aa21.68■■□□□ 1.06
SF3B1-204ENST00000414963 MAP3K4Q9Y6R4 1608 aa21.68■■□□□ 1.06
SF3B1-204ENST00000414963 CAMSAP2Q08AD1 1489 aa21.65■■□□□ 1.06
SF3B1-204ENST00000414963 KIAA1107Q9UPP5 1409 aa21.65■■□□□ 1.06
SF3B1-204ENST00000414963 ZNF777Q9ULD5 760 aaPredicted RBP21.65■■□□□ 1.06
SF3B1-204ENST00000414963 PLEKHH2Q8IVE3 1493 aa21.64■■□□□ 1.06
SF3B1-204ENST00000414963 FANCAO15360 1455 aa21.64■■□□□ 1.05
SF3B1-204ENST00000414963 SAMD9LQ8IVG5 1584 aa21.62■■□□□ 1.05
SF3B1-204ENST00000414963 PCGF6Q9BYE7 350 aa21.62■■□□□ 1.05
SF3B1-204ENST00000414963 RSPH4AQ5TD94 716 aa21.61■■□□□ 1.05
SF3B1-204ENST00000414963 KIF13AQ9H1H9 1805 aa21.6■■□□□ 1.05
SF3B1-204ENST00000414963 NEO1Q92859 1461 aa21.6■■□□□ 1.05
SF3B1-204ENST00000414963 MBD5Q9P267 1494 aa21.59■■□□□ 1.05
SF3B1-204ENST00000414963 AKNAQ7Z591 1439 aa21.58■■□□□ 1.05
SF3B1-204ENST00000414963 CFAP74Q9C0B2 1584 aa21.57■■□□□ 1.04
SF3B1-204ENST00000414963 ABCC5O15440 1437 aa21.57■■□□□ 1.04
SF3B1-204ENST00000414963 ARHGEF5Q12774 1597 aa21.57■■□□□ 1.04
SF3B1-204ENST00000414963 ABCC1P33527 1531 aa21.56■■□□□ 1.04
SF3B1-204ENST00000414963 HNRNPMP52272 730 aaKnown RBP eCLIP21.56■■□□□ 1.043e-7■■■■□ 24.6
SF3B1-204ENST00000414963 TEX14Q8IWB6 1497 aa21.55■■□□□ 1.04
SF3B1-204ENST00000414963 DNMT1P26358 1616 aaKnown RBP21.55■■□□□ 1.04
SF3B1-204ENST00000414963 ARHGEF12Q9NZN5 1544 aa21.55■■□□□ 1.04
SF3B1-204ENST00000414963 DAPK1P53355 1430 aa21.55■■□□□ 1.04
SF3B1-204ENST00000414963 PTPRKQ15262 1439 aa21.54■■□□□ 1.04
SF3B1-204ENST00000414963 ADGRL1O94910 1474 aa21.52■■□□□ 1.04
SF3B1-204ENST00000414963 SYCP2Q9BX26 1530 aa21.52■■□□□ 1.04
SF3B1-204ENST00000414963 ITGAEP38570 1179 aa21.52■■□□□ 1.04
SF3B1-204ENST00000414963 PPRC1Q5VV67 1664 aaKnown RBP21.52■■□□□ 1.04
SF3B1-204ENST00000414963 SCAPERQ9BY12 1400 aa21.52■■□□□ 1.04
SF3B1-204ENST00000414963 CCDC141Q6ZP82 1450 aa21.51■■□□□ 1.03
SF3B1-204ENST00000414963 TRHP20396 242 aaPredicted RBP21.49■■□□□ 1.03
SF3B1-204ENST00000414963 SHANK2Q9UPX8 1470 aa21.49■■□□□ 1.03
SF3B1-204ENST00000414963 TRAPPC8Q9Y2L5 1435 aa21.48■■□□□ 1.03
SF3B1-204ENST00000414963 TSPY4P0CV99 314 aa21.48■■□□□ 1.03
SF3B1-204ENST00000414963 TSPY10P0CW01 314 aa21.48■■□□□ 1.03
SF3B1-204ENST00000414963 ROCK1Q13464 1354 aa21.48■■□□□ 1.03
SF3B1-204ENST00000414963 AFAP1Q8N556 730 aa21.44■■□□□ 1.02
SF3B1-204ENST00000414963 C9orf84Q5VXU9 1444 aa21.44■■□□□ 1.02
SF3B1-204ENST00000414963 POGZQ7Z3K3 1410 aa21.44■■□□□ 1.02
SF3B1-204ENST00000414963 DENND4BO75064 1496 aaPredicted RBP21.44■■□□□ 1.02
SF3B1-204ENST00000414963 ADGRL2O95490 1459 aa21.44■■□□□ 1.02
SF3B1-204ENST00000414963 MAST1Q9Y2H9 1570 aa21.44■■□□□ 1.02
SF3B1-204ENST00000414963 CROCC2H7BZ55 1655 aa21.44■■□□□ 1.02
SF3B1-204ENST00000414963 TSPOAP1O95153 1857 aa21.43■■□□□ 1.02
SF3B1-204ENST00000414963 ZNF518AQ6AHZ1 1483 aa21.43■■□□□ 1.02
SF3B1-204ENST00000414963 RTEL1-TNFRSF6BF6WH68 1400 aa21.42■■□□□ 1.02
SF3B1-204ENST00000414963 CHIC2Q9UKJ5 165 aa21.42■■□□□ 1.02
SF3B1-204ENST00000414963 NCOA1Q15788 1441 aa21.41■■□□□ 1.02
SF3B1-204ENST00000414963 HFM1A2PYH4 1435 aa21.4■■□□□ 1.02
SF3B1-204ENST00000414963 ANKRD30AQ9BXX3 1397 aa21.4■■□□□ 1.02
SF3B1-204ENST00000414963 SPAG9O60271 1321 aaKnown RBP21.39■■□□□ 1.01
SF3B1-204ENST00000414963 KDM5CP41229 1560 aa21.38■■□□□ 1.01
SF3B1-204ENST00000414963 HRCP23327 699 aa21.37■■□□□ 1.01
SF3B1-204ENST00000414963 NAIPQ13075 1403 aa21.37■■□□□ 1.01
SF3B1-204ENST00000414963 SETD5Q9C0A6 1442 aa21.37■■□□□ 1.01
SF3B1-204ENST00000414963 RAPGEF3O95398 923 aa21.36■■□□□ 1.01
SF3B1-204ENST00000414963 MLH3Q9UHC1 1453 aa21.36■■□□□ 1.01
SF3B1-204ENST00000414963 ADGBQ8N7X0 1667 aa21.35■■□□□ 1.01
SF3B1-204ENST00000414963 RRP7BPQ9NSQ0 103 aa21.35■■□□□ 1.01
SF3B1-204ENST00000414963 COL17A1Q9UMD9 1497 aaPredicted RBP21.34■■□□□ 1.01
SF3B1-204ENST00000414963 RICTORQ6R327 1708 aa21.34■■□□□ 1.01
SF3B1-204ENST00000414963 INO80Q9ULG1 1556 aaPredicted RBP21.33■■□□□ 1.01
SF3B1-204ENST00000414963 ZFYVE16Q7Z3T8 1539 aa21.33■■□□□ 1
SF3B1-204ENST00000414963 PLXNC1O60486 1568 aa21.32■■□□□ 1
SF3B1-204ENST00000414963 FRMPD1Q5SYB0 1578 aa21.31■■□□□ 1
SF3B1-204ENST00000414963 ATP7AQ04656 1500 aa21.31■■□□□ 1
SF3B1-204ENST00000414963 ZMYM4Q5VZL5 1548 aa21.31■■□□□ 1
SF3B1-204ENST00000414963 KIF15Q9NS87 1388 aa21.31■■□□□ 1
SF3B1-204ENST00000414963 MAGI2Q86UL8 1455 aa21.3■■□□□ 1
SF3B1-204ENST00000414963 ACIN1Q9UKV3 1341 aaKnown RBP21.29■■□□□ 1
SF3B1-204ENST00000414963 GCC2Q8IWJ2 1684 aa21.28■■□□□ 1
SF3B1-204ENST00000414963 RAB3GAP2Q9H2M9 1393 aa21.28■■□□□ 1
SF3B1-204ENST00000414963 HECW2Q9P2P5 1572 aa21.27■■□□□ 1
SF3B1-204ENST00000414963 KIDINS220Q9ULH0 1771 aa21.27■■□□□ 1
SF3B1-204ENST00000414963 DUOX2Q9NRD8 1548 aa21.26■□□□□ 0.99
SF3B1-204ENST00000414963 ANKRD50Q9ULJ7 1429 aa21.26■□□□□ 0.99
SF3B1-204ENST00000414963 MYT1LQ9UL68 1186 aa21.23■□□□□ 0.99
SF3B1-204ENST00000414963 DHX29Q7Z478 1369 aaKnown RBP21.23■□□□□ 0.99
SF3B1-204ENST00000414963 ERBINQ96RT1 1412 aa21.21■□□□□ 0.99
SF3B1-204ENST00000414963 YEATS2Q9ULM3 1422 aa21.2■□□□□ 0.98
SF3B1-204ENST00000414963 KDM6BO15054 1643 aa21.19■□□□□ 0.98
SF3B1-204ENST00000414963 A2MP01023 1474 aa21.19■□□□□ 0.98
SF3B1-204ENST00000414963 DIP2CQ9Y2E4 1556 aa21.18■□□□□ 0.98
SF3B1-204ENST00000414963 ABCA6Q8N139 1617 aa21.18■□□□□ 0.98
SF3B1-204ENST00000414963 ATP10AO60312 1499 aa21.17■□□□□ 0.98
SF3B1-204ENST00000414963 REREQ9P2R6 1566 aa21.14■□□□□ 0.97
SF3B1-204ENST00000414963 ARHGEF40Q8TER5 1519 aa21.12■□□□□ 0.97
SF3B1-204ENST00000414963 EIF2AK4Q9P2K8 1649 aaKnown RBP21.11■□□□□ 0.97
SF3B1-204ENST00000414963 KIF3BO15066 747 aa21.08■□□□□ 0.97
SF3B1-204ENST00000414963 BCORL1Q5H9F3 1711 aa21.08■□□□□ 0.97
SF3B1-204ENST00000414963 TRIM52Q96A61 297 aa21.08■□□□□ 0.97
SF3B1-204ENST00000414963 AGLP35573 1532 aa21.08■□□□□ 0.96
SF3B1-204ENST00000414963 DHX57Q6P158 1386 aaKnown RBP21.08■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms