RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 PTMAP06454 111 aaKnown RBP14.18□□□□□ -0.14
HPS4-202ENST00000398145 CCDC18Q5T9S5 1454 aa14.17□□□□□ -0.14
HPS4-202ENST00000398145 EIF4G1Q04637 1599 aaKnown RBP14.17□□□□□ -0.14
HPS4-202ENST00000398145 TNNT2P45379 298 aaPredicted RBP14.16□□□□□ -0.14
HPS4-202ENST00000398145 MAPK8IP3Q9UPT6 1336 aa14.16□□□□□ -0.14
HPS4-202ENST00000398145 EXOC6Q8TAG9 804 aa14.15□□□□□ -0.14
HPS4-202ENST00000398145 RRP1P56182 461 aaKnown RBP14.15□□□□□ -0.14
HPS4-202ENST00000398145 PNNQ9H307 717 aaKnown RBP14.15□□□□□ -0.14
HPS4-202ENST00000398145 SPRYD3Q8NCJ5 442 aa14.15□□□□□ -0.14
HPS4-202ENST00000398145 NUP155O75694 1391 aa14.15□□□□□ -0.14
HPS4-202ENST00000398145 GSE1Q14687 1217 aa14.14□□□□□ -0.15
HPS4-202ENST00000398145 MYBBP1AQ9BQG0 1328 aaKnown RBP14.14□□□□□ -0.15
HPS4-202ENST00000398145 KIF15Q9NS87 1388 aa14.14□□□□□ -0.15
HPS4-202ENST00000398145 ATAD2BQ9ULI0 1458 aa14.14□□□□□ -0.15
HPS4-202ENST00000398145 DNTTIP2Q5QJE6 756 aaKnown RBP14.14□□□□□ -0.15
HPS4-202ENST00000398145 RRBP1Q9P2E9 1410 aaKnown RBP14.14□□□□□ -0.15
HPS4-202ENST00000398145 GOLGA2Q08379 1002 aa14.13□□□□□ -0.15
HPS4-202ENST00000398145 CHMP4BQ9H444 224 aaKnown RBP14.13□□□□□ -0.15
HPS4-202ENST00000398145 CASC1Q6TDU7 716 aa14.13□□□□□ -0.15
HPS4-202ENST00000398145 NPM1P06748 294 aaKnown RBP eCLIP14.12□□□□□ -0.15
HPS4-202ENST00000398145 GZF1Q9H116 711 aaPredicted RBP14.11□□□□□ -0.15
HPS4-202ENST00000398145 PHLDB1Q86UU1 1377 aa14.11□□□□□ -0.15
HPS4-202ENST00000398145 ANKRD30AQ9BXX3 1397 aa14.11□□□□□ -0.15
HPS4-202ENST00000398145 ST20-MTHFSA0A0A6YYL1 179 aa14.1□□□□□ -0.15
HPS4-202ENST00000398145 CENPQQ7L2Z9 268 aaPredicted RBP14.1□□□□□ -0.15
HPS4-202ENST00000398145 CCDC7Q96M83 1385 aa14.1□□□□□ -0.15
HPS4-202ENST00000398145 ARID4BQ4LE39 1312 aaPredicted RBP14.09□□□□□ -0.15
HPS4-202ENST00000398145 WASHC2AQ641Q2 1341 aa14.09□□□□□ -0.15
HPS4-202ENST00000398145 TDRD9Q8NDG6 1382 aaKnown RBP14.09□□□□□ -0.15
HPS4-202ENST00000398145 UACAQ9BZF9 1416 aa14.09□□□□□ -0.15
HPS4-202ENST00000398145 FAM161AQ3B820 660 aa14.09□□□□□ -0.15
HPS4-202ENST00000398145 RWDD1Q9H446 243 aaPredicted RBP14.09□□□□□ -0.15
HPS4-202ENST00000398145 U2SURPO15042 1029 aaKnown RBP14.09□□□□□ -0.15
HPS4-202ENST00000398145 SLC4A3P48751 1232 aa14.09□□□□□ -0.15
HPS4-202ENST00000398145 ESF1Q9H501 851 aaKnown RBP14.09□□□□□ -0.15
HPS4-202ENST00000398145 GOLGA6L3A6NEY3 463 aa14.08□□□□□ -0.15
HPS4-202ENST00000398145 PLIN1O60240 522 aa14.08□□□□□ -0.16
HPS4-202ENST00000398145 MSNP26038 577 aaKnown RBP14.08□□□□□ -0.16
HPS4-202ENST00000398145 CNTLNQ9NXG0 1405 aa14.08□□□□□ -0.16
HPS4-202ENST00000398145 MORC1Q86VD1 984 aa14.07□□□□□ -0.16
HPS4-202ENST00000398145 USP47Q96K76 1375 aa14.07□□□□□ -0.16
HPS4-202ENST00000398145 GBP4Q96PP9 640 aa14.07□□□□□ -0.16
HPS4-202ENST00000398145 PMFBP1Q8TBY8 1022 aa14.07□□□□□ -0.16
HPS4-202ENST00000398145 KIF7Q2M1P5 1343 aa14.06□□□□□ -0.16
HPS4-202ENST00000398145 LRRC9Q6ZRR7 1453 aa14.06□□□□□ -0.16
HPS4-202ENST00000398145 ARAP1Q96P48 1450 aa14.06□□□□□ -0.16
HPS4-202ENST00000398145 IGF1RP08069 1367 aa14.05□□□□□ -0.16
HPS4-202ENST00000398145 FGD6Q6ZV73 1430 aa14.05□□□□□ -0.16
HPS4-202ENST00000398145 CRBNQ96SW2 442 aa14.05□□□□□ -0.16
HPS4-202ENST00000398145 SENP3Q9H4L4 574 aaPredicted RBP14.05□□□□□ -0.16
HPS4-202ENST00000398145 RSPH6AQ9H0K4 717 aa14.05□□□□□ -0.16
HPS4-202ENST00000398145 CADPSQ9ULU8 1353 aa14.04□□□□□ -0.16
HPS4-202ENST00000398145 PTMSP20962 102 aa14.03□□□□□ -0.16
HPS4-202ENST00000398145 PAK3O75914 559 aaPredicted RBP14.02□□□□□ -0.17
HPS4-202ENST00000398145 IPO8O15397 1037 aaKnown RBP14.01□□□□□ -0.17
HPS4-202ENST00000398145 CENPJQ9HC77 1338 aaPredicted RBP14.01□□□□□ -0.17
HPS4-202ENST00000398145 MFAP1P55081 439 aaKnown RBP14□□□□□ -0.17
HPS4-202ENST00000398145 PLCB2Q00722 1185 aa14□□□□□ -0.17
HPS4-202ENST00000398145 CCDC146Q8IYE0 955 aa14□□□□□ -0.17
HPS4-202ENST00000398145 CFAP44Q96MT7 982 aa14□□□□□ -0.17
HPS4-202ENST00000398145 PANK3Q9H999 370 aa14□□□□□ -0.17
HPS4-202ENST00000398145 ERICH3Q5RHP9 1530 aa14□□□□□ -0.17
HPS4-202ENST00000398145 TPRNQ4KMQ1 711 aa13.99□□□□□ -0.17
HPS4-202ENST00000398145 CLUAP1Q96AJ1 413 aa13.98□□□□□ -0.17
HPS4-202ENST00000398145 U2AF1L5P0DN76 240 aaPredicted RBP13.98□□□□□ -0.17
HPS4-202ENST00000398145 U2AF1Q01081 240 aaKnown RBP eCLIP13.98□□□□□ -0.176e-11■■■■□ 21.2
HPS4-202ENST00000398145 MSH5O43196 834 aa13.98□□□□□ -0.17
HPS4-202ENST00000398145 ITPRIPQ8IWB1 547 aa13.98□□□□□ -0.17
HPS4-202ENST00000398145 MYOM3Q5VTT5 1437 aa13.97□□□□□ -0.17
HPS4-202ENST00000398145 NFKBIBQ15653 356 aa13.97□□□□□ -0.17
HPS4-202ENST00000398145 POGKQ9P215 609 aa13.96□□□□□ -0.17
HPS4-202ENST00000398145 CGNL1Q0VF96 1302 aa13.96□□□□□ -0.17
HPS4-202ENST00000398145 WDR97A6NE52 1622 aa13.96□□□□□ -0.17
HPS4-202ENST00000398145 SYNJ1O43426 1573 aa13.95□□□□□ -0.18
HPS4-202ENST00000398145 KANK1Q14678 1352 aa13.95□□□□□ -0.18
HPS4-202ENST00000398145 PRXQ9BXM0 1461 aa13.94□□□□□ -0.18
HPS4-202ENST00000398145 HSP90AA2PQ14568 343 aaPredicted RBP13.94□□□□□ -0.18
HPS4-202ENST00000398145 SMC4Q9NTJ3 1288 aa13.94□□□□□ -0.18
HPS4-202ENST00000398145 CARMIL2Q6F5E8 1435 aa13.93□□□□□ -0.18
HPS4-202ENST00000398145 E9PSI1 815 aa13.93□□□□□ -0.18
HPS4-202ENST00000398145 DDX11L8A8MPP1 907 aa13.92□□□□□ -0.18
HPS4-202ENST00000398145 HNRNPMP52272 730 aaKnown RBP eCLIP13.92□□□□□ -0.18
HPS4-202ENST00000398145 CHAF1AQ13111 956 aaPredicted RBP13.92□□□□□ -0.18
HPS4-202ENST00000398145 CCDC184Q52MB2 194 aa13.92□□□□□ -0.18
HPS4-202ENST00000398145 RSPH4AQ5TD94 716 aa13.92□□□□□ -0.18
HPS4-202ENST00000398145 AKNAQ7Z591 1439 aa13.92□□□□□ -0.18
HPS4-202ENST00000398145 BRD4O60885 1362 aaPredicted RBP13.92□□□□□ -0.18
HPS4-202ENST00000398145 EIF3AQ14152 1382 aaKnown RBP13.91□□□□□ -0.18
HPS4-202ENST00000398145 HAP1P54257 671 aaPredicted RBP13.91□□□□□ -0.18
HPS4-202ENST00000398145 SRPK2P78362 688 aaKnown RBP13.91□□□□□ -0.18
HPS4-202ENST00000398145 ZRSR1Q15695 479 aaKnown RBP13.91□□□□□ -0.18
HPS4-202ENST00000398145 CCDC144AA2RUR9 1427 aa13.91□□□□□ -0.18
HPS4-202ENST00000398145 COG6Q9Y2V7 657 aa13.91□□□□□ -0.18
HPS4-202ENST00000398145 CASKIN1Q8WXD9 1431 aa13.9□□□□□ -0.18
HPS4-202ENST00000398145 MCCP23508 829 aa13.9□□□□□ -0.18
HPS4-202ENST00000398145 CALD1Q05682 793 aaKnown RBP13.9□□□□□ -0.18
HPS4-202ENST00000398145 IL27Q8NEV9 243 aa13.9□□□□□ -0.18
HPS4-202ENST00000398145 CUX1P39880 1505 aa13.9□□□□□ -0.18
HPS4-202ENST00000398145 PDS5BQ9NTI5 1447 aa13.9□□□□□ -0.18
HPS4-202ENST00000398145 APAF1O14727 1248 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms