RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 UPF2Q9HAU5 1272 aaKnown RBP14.33□□□□□ -0.11
CCDC40-204ENST00000397545 PTPRKQ15262 1439 aa14.33□□□□□ -0.12
CCDC40-204ENST00000397545 PPP1R15AO75807 674 aaPredicted RBP14.33□□□□□ -0.12
CCDC40-204ENST00000397545 WDR97A6NE52 1622 aa14.31□□□□□ -0.12
CCDC40-204ENST00000397545 CDK13Q14004 1512 aaKnown RBP14.31□□□□□ -0.12
CCDC40-204ENST00000397545 TRHP20396 242 aaPredicted RBP14.31□□□□□ -0.12
CCDC40-204ENST00000397545 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.31□□□□□ -0.12
CCDC40-204ENST00000397545 TARBP1Q13395 1621 aaKnown RBP14.3□□□□□ -0.12
CCDC40-204ENST00000397545 ZNF644Q9H582 1327 aaPredicted RBP14.29□□□□□ -0.12
CCDC40-204ENST00000397545 IQGAP2Q13576 1575 aa14.28□□□□□ -0.12
CCDC40-204ENST00000397545 RBM19Q9Y4C8 960 aaKnown RBP14.28□□□□□ -0.12
CCDC40-204ENST00000397545 LAS1LQ9Y4W2 734 aaKnown RBP14.27□□□□□ -0.13
CCDC40-204ENST00000397545 IFT140Q96RY7 1462 aa14.26□□□□□ -0.13
CCDC40-204ENST00000397545 RTN4Q9NQC3 1192 aaKnown RBP14.26□□□□□ -0.13
CCDC40-204ENST00000397545 PPP4R2Q9NY27 417 aa14.26□□□□□ -0.13
CCDC40-204ENST00000397545 SAMD9Q5K651 1589 aa14.26□□□□□ -0.13
CCDC40-204ENST00000397545 EPRSP07814 1512 aaKnown RBP14.25□□□□□ -0.13
CCDC40-204ENST00000397545 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.25□□□□□ -0.13
CCDC40-204ENST00000397545 EHBP1L1Q8N3D4 1523 aa14.25□□□□□ -0.13
CCDC40-204ENST00000397545 NAIPQ13075 1403 aa14.25□□□□□ -0.13
CCDC40-204ENST00000397545 CFDP1Q9UEE9 299 aaPredicted RBP14.24□□□□□ -0.13
CCDC40-204ENST00000397545 HFM1A2PYH4 1435 aa14.24□□□□□ -0.13
CCDC40-204ENST00000397545 TIMELESSQ9UNS1 1208 aa14.24□□□□□ -0.13
CCDC40-204ENST00000397545 SUPT6HQ7KZ85 1726 aaKnown RBP14.23□□□□□ -0.13
CCDC40-204ENST00000397545 UACAQ9BZF9 1416 aa14.23□□□□□ -0.13
CCDC40-204ENST00000397545 MAGI3Q5TCQ9 1506 aa14.23□□□□□ -0.13
CCDC40-204ENST00000397545 JPH4Q96JJ6 628 aa14.23□□□□□ -0.13
CCDC40-204ENST00000397545 MPHOSPH9Q99550 1183 aa14.22□□□□□ -0.13
CCDC40-204ENST00000397545 ADAMTS12P58397 1594 aa14.22□□□□□ -0.13
CCDC40-204ENST00000397545 PBRM1Q86U86 1689 aa14.22□□□□□ -0.13
CCDC40-204ENST00000397545 CARD11Q9BXL7 1154 aa14.22□□□□□ -0.13
CCDC40-204ENST00000397545 ESF1Q9H501 851 aaKnown RBP14.21□□□□□ -0.13
CCDC40-204ENST00000397545 TSHZ2Q9NRE2 1034 aa14.21□□□□□ -0.13
CCDC40-204ENST00000397545 ANP32BQ92688 251 aaKnown RBP14.21□□□□□ -0.13
CCDC40-204ENST00000397545 HECW1Q76N89 1606 aa14.2□□□□□ -0.14
CCDC40-204ENST00000397545 PTPN23Q9H3S7 1636 aa14.2□□□□□ -0.14
CCDC40-204ENST00000397545 STAG3Q9UJ98 1225 aa14.2□□□□□ -0.14
CCDC40-204ENST00000397545 THOC2Q8NI27 1593 aaKnown RBP14.19□□□□□ -0.14
CCDC40-204ENST00000397545 RGS3P49796 1198 aa14.18□□□□□ -0.14
CCDC40-204ENST00000397545 NEUROD2Q15784 382 aa14.18□□□□□ -0.14
CCDC40-204ENST00000397545 KIAA0586Q9BVV6 1533 aa14.18□□□□□ -0.14
CCDC40-204ENST00000397545 UGGT2Q9NYU1 1516 aa14.18□□□□□ -0.14
CCDC40-204ENST00000397545 PLEKHD1A6NEE1 506 aa14.17□□□□□ -0.14
CCDC40-204ENST00000397545 GRIN2AQ12879 1464 aa14.17□□□□□ -0.14
CCDC40-204ENST00000397545 NOP58Q9Y2X3 529 aaKnown RBP14.17□□□□□ -0.14
CCDC40-204ENST00000397545 LRRIQ1Q96JM4 1722 aa14.17□□□□□ -0.14
CCDC40-204ENST00000397545 PRG4Q92954 1404 aaPredicted RBP14.17□□□□□ -0.14
CCDC40-204ENST00000397545 L3MBTL2Q969R5 705 aa14.16□□□□□ -0.14
CCDC40-204ENST00000397545 HSPA5P11021 654 aaKnown RBP14.15□□□□□ -0.14
CCDC40-204ENST00000397545 PLB1Q6P1J6 1458 aa14.14□□□□□ -0.15
CCDC40-204ENST00000397545 CC2D1BQ5T0F9 858 aaKnown RBP14.13□□□□□ -0.15
CCDC40-204ENST00000397545 CARMIL2Q6F5E8 1435 aa14.13□□□□□ -0.15
CCDC40-204ENST00000397545 WDR62O43379 1518 aa14.12□□□□□ -0.15
CCDC40-204ENST00000397545 CYB5RLQ6IPT4 315 aa14.12□□□□□ -0.15
CCDC40-204ENST00000397545 CCER2I3L3R5 266 aa14.12□□□□□ -0.15
CCDC40-204ENST00000397545 EIF4G3O43432 1585 aaKnown RBP14.12□□□□□ -0.15
CCDC40-204ENST00000397545 DISP1Q96F81 1524 aa14.12□□□□□ -0.15
CCDC40-204ENST00000397545 KNSTRNQ9Y448 316 aa14.11□□□□□ -0.15
CCDC40-204ENST00000397545 NUP153P49790 1475 aaKnown RBP14.11□□□□□ -0.15
CCDC40-204ENST00000397545 DDRGK1Q96HY6 314 aa14.11□□□□□ -0.15
CCDC40-204ENST00000397545 MIA2Q96PC5 1412 aa14.1□□□□□ -0.15
CCDC40-204ENST00000397545 DEKP35659 375 aaKnown RBP14.1□□□□□ -0.15
CCDC40-204ENST00000397545 ARID4BQ4LE39 1312 aaPredicted RBP14.09□□□□□ -0.15
CCDC40-204ENST00000397545 TNNT2P45379 298 aaPredicted RBP14.09□□□□□ -0.15
CCDC40-204ENST00000397545 KIAA0556O60303 1618 aa14.08□□□□□ -0.16
CCDC40-204ENST00000397545 DAPK1P53355 1430 aa14.08□□□□□ -0.16
CCDC40-204ENST00000397545 FRAT1Q92837 279 aaPredicted RBP14.07□□□□□ -0.16
CCDC40-204ENST00000397545 SYNJ2O15056 1496 aa14.07□□□□□ -0.16
CCDC40-204ENST00000397545 DCAF11Q8TEB1 546 aa14.07□□□□□ -0.16
CCDC40-204ENST00000397545 ABCC5O15440 1437 aa14.07□□□□□ -0.16
CCDC40-204ENST00000397545 HNRNPMP52272 730 aaKnown RBP eCLIP14.07□□□□□ -0.16
CCDC40-204ENST00000397545 PKD2Q13563 968 aa14.06□□□□□ -0.16
CCDC40-204ENST00000397545 BECN1Q14457 450 aa14.06□□□□□ -0.16
CCDC40-204ENST00000397545 PPM1GO15355 546 aaPredicted RBP14.06□□□□□ -0.16
CCDC40-204ENST00000397545 TCOF1Q13428 1488 aaKnown RBP14.05□□□□□ -0.16
CCDC40-204ENST00000397545 MAGI1Q96QZ7 1491 aaPredicted RBP14.05□□□□□ -0.16
CCDC40-204ENST00000397545 KDM6BO15054 1643 aa14.05□□□□□ -0.16
CCDC40-204ENST00000397545 TROQ12816 1431 aaPredicted RBP14.05□□□□□ -0.16
CCDC40-204ENST00000397545 MLECQ14165 292 aa14.05□□□□□ -0.16
CCDC40-204ENST00000397545 ARHGEF11O15085 1522 aa14.04□□□□□ -0.16
CCDC40-204ENST00000397545 PLEKHG5O94827 1062 aa14.04□□□□□ -0.16
CCDC40-204ENST00000397545 RAPGEF6Q8TEU7 1601 aa14.03□□□□□ -0.16
CCDC40-204ENST00000397545 NBPF8Q3BBV2 869 aa14.03□□□□□ -0.16
CCDC40-204ENST00000397545 WASHC2AQ641Q2 1341 aa14.02□□□□□ -0.17
CCDC40-204ENST00000397545 CEP170Q5SW79 1584 aa14.01□□□□□ -0.17
CCDC40-204ENST00000397545 GLIPR1L2Q4G1C9 344 aa14.01□□□□□ -0.17
CCDC40-204ENST00000397545 PTPRGP23470 1445 aa14□□□□□ -0.17
CCDC40-204ENST00000397545 ANKRD30AQ9BXX3 1397 aa13.99□□□□□ -0.17
CCDC40-204ENST00000397545 NUP155O75694 1391 aa13.99□□□□□ -0.17
CCDC40-204ENST00000397545 NCLP19338 710 aaKnown RBP13.99□□□□□ -0.17
CCDC40-204ENST00000397545 TPRNQ4KMQ1 711 aa13.99□□□□□ -0.17
CCDC40-204ENST00000397545 CAMSAP2Q08AD1 1489 aa13.99□□□□□ -0.17
CCDC40-204ENST00000397545 MYH16Q9H6N6 1097 aa13.98□□□□□ -0.17
CCDC40-204ENST00000397545 FTSJ3Q8IY81 847 aaKnown RBP13.98□□□□□ -0.17
CCDC40-204ENST00000397545 TRIM44Q96DX7 344 aaPredicted RBP13.98□□□□□ -0.17
CCDC40-204ENST00000397545 C11orf95C9JLR9 678 aaPredicted RBP13.98□□□□□ -0.17
CCDC40-204ENST00000397545 GPATCH8Q9UKJ3 1502 aaKnown RBP13.97□□□□□ -0.17
CCDC40-204ENST00000397545 ANKRD30BQ9BXX2 1392 aa13.97□□□□□ -0.17
CCDC40-204ENST00000397545 ROCK1Q13464 1354 aa13.96□□□□□ -0.17
CCDC40-204ENST00000397545 AKNAQ7Z591 1439 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms