RNA–Protein interactions for RNA: ENST00000396342.6

DDR1-229, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 3

Gene DDR1, Length 675 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-229ENST00000396342 CCDC18Q5T9S5 1454 aa26.44■■□□□ 1.82
DDR1-229ENST00000396342 ZMYM4Q5VZL5 1548 aa26.43■■□□□ 1.82
DDR1-229ENST00000396342 ARHGAP5Q13017 1502 aa26.42■■□□□ 1.82
DDR1-229ENST00000396342 ADAMTSL3P82987 1691 aa26.41■■□□□ 1.82
DDR1-229ENST00000396342 CASKIN1Q8WXD9 1431 aa26.41■■□□□ 1.82
DDR1-229ENST00000396342 ILDR1Q86SU0 546 aaPredicted RBP26.41■■□□□ 1.82
DDR1-229ENST00000396342 RICTORQ6R327 1708 aa26.4■■□□□ 1.82
DDR1-229ENST00000396342 BCORL1Q5H9F3 1711 aa26.39■■□□□ 1.82
DDR1-229ENST00000396342 YEATS2Q9ULM3 1422 aa26.39■■□□□ 1.81
DDR1-229ENST00000396342 ZNF518AQ6AHZ1 1483 aa26.38■■□□□ 1.81
DDR1-229ENST00000396342 ATP10AO60312 1499 aa26.36■■□□□ 1.81
DDR1-229ENST00000396342 MYO5CQ9NQX4 1742 aa26.36■■□□□ 1.81
DDR1-229ENST00000396342 ESF1Q9H501 851 aaKnown RBP26.35■■□□□ 1.81
DDR1-229ENST00000396342 MADDQ8WXG6 1647 aa26.35■■□□□ 1.81
DDR1-229ENST00000396342 C9orf84Q5VXU9 1444 aa26.33■■□□□ 1.81
DDR1-229ENST00000396342 AFAP1Q8N556 730 aa26.33■■□□□ 1.81
DDR1-229ENST00000396342 FYCO1Q9BQS8 1478 aa26.3■■□□□ 1.8
DDR1-229ENST00000396342 ZNF777Q9ULD5 760 aaPredicted RBP26.29■■□□□ 1.8
DDR1-229ENST00000396342 RIMS1Q86UR5 1692 aaKnown RBP26.26■■□□□ 1.79
DDR1-229ENST00000396342 PCF11O94913 1555 aaKnown RBP26.26■■□□□ 1.79
DDR1-229ENST00000396342 MTUS2Q5JR59 1369 aa26.2■■□□□ 1.79
DDR1-229ENST00000396342 CFDP1Q9UEE9 299 aaPredicted RBP26.2■■□□□ 1.78
DDR1-229ENST00000396342 LMTK3Q96Q04 1460 aa26.18■■□□□ 1.78
DDR1-229ENST00000396342 CCNB3Q8WWL7 1395 aa26.18■■□□□ 1.78
DDR1-229ENST00000396342 HSPA2P54652 639 aa26.17■■□□□ 1.78
DDR1-229ENST00000396342 MLH3Q9UHC1 1453 aa26.17■■□□□ 1.78
DDR1-229ENST00000396342 FBXO41Q8TF61 875 aa26.16■■□□□ 1.78
DDR1-229ENST00000396342 KDM5CP41229 1560 aa26.16■■□□□ 1.78
DDR1-229ENST00000396342 SPAG9O60271 1321 aaKnown RBP26.14■■□□□ 1.78
DDR1-229ENST00000396342 PREX2Q70Z35 1606 aa26.14■■□□□ 1.77
DDR1-229ENST00000396342 ARHGEF12Q9NZN5 1544 aa26.13■■□□□ 1.77
DDR1-229ENST00000396342 TRAPPC8Q9Y2L5 1435 aa26.13■■□□□ 1.77
DDR1-229ENST00000396342 PLEKHH2Q8IVE3 1493 aa26.11■■□□□ 1.77
DDR1-229ENST00000396342 CEBPAP49715 358 aaPredicted RBP26.11■■□□□ 1.77
DDR1-229ENST00000396342 FER1L4A9Z1Z3 1794 aa26.1■■□□□ 1.77
DDR1-229ENST00000396342 ABCC1P33527 1531 aa26.1■■□□□ 1.77
DDR1-229ENST00000396342 DMRT2Q9Y5R5 561 aa26.1■■□□□ 1.77
DDR1-229ENST00000396342 HNRNPMP52272 730 aaKnown RBP eCLIP26.09■■□□□ 1.77
DDR1-229ENST00000396342 LRRIQ1Q96JM4 1722 aa26.08■■□□□ 1.77
DDR1-229ENST00000396342 CDC42BPBQ9Y5S2 1711 aa26.06■■□□□ 1.76
DDR1-229ENST00000396342 GPATCH8Q9UKJ3 1502 aaKnown RBP26.06■■□□□ 1.76
DDR1-229ENST00000396342 UHRF1BP1Q6BDS2 1440 aa26.05■■□□□ 1.76
DDR1-229ENST00000396342 DIP2CQ9Y2E4 1556 aa26.05■■□□□ 1.76
DDR1-229ENST00000396342 REREQ9P2R6 1566 aa26.04■■□□□ 1.76
DDR1-229ENST00000396342 CNTLNQ9NXG0 1405 aa26.04■■□□□ 1.76
DDR1-229ENST00000396342 KIAA1107Q9UPP5 1409 aa26.03■■□□□ 1.76
DDR1-229ENST00000396342 CEP162Q5TB80 1403 aa26.02■■□□□ 1.76
DDR1-229ENST00000396342 AGLP35573 1532 aa26.02■■□□□ 1.76
DDR1-229ENST00000396342 SIGLEC1Q9BZZ2 1709 aa26■■□□□ 1.75
DDR1-229ENST00000396342 ITSN2Q9NZM3 1697 aa25.99■■□□□ 1.75
DDR1-229ENST00000396342 SYCP2Q9BX26 1530 aa25.98■■□□□ 1.75
DDR1-229ENST00000396342 ABCA6Q8N139 1617 aa25.97■■□□□ 1.75
DDR1-229ENST00000396342 CDC42BPAQ5VT25 1732 aa25.97■■□□□ 1.75
DDR1-229ENST00000396342 SAMD9LQ8IVG5 1584 aa25.95■■□□□ 1.75
DDR1-229ENST00000396342 EHBP1L1Q8N3D4 1523 aa25.94■■□□□ 1.74
DDR1-229ENST00000396342 GGT6Q6P531 493 aa25.92■■□□□ 1.74
DDR1-229ENST00000396342 PREX1Q8TCU6 1659 aa25.92■■□□□ 1.74
DDR1-229ENST00000396342 RSPH4AQ5TD94 716 aa25.91■■□□□ 1.74
DDR1-229ENST00000396342 CERKQ8TCT0 537 aa25.91■■□□□ 1.74
DDR1-229ENST00000396342 PPP6R1Q9UPN7 881 aa25.9■■□□□ 1.74
DDR1-229ENST00000396342 ATP7AQ04656 1500 aa25.89■■□□□ 1.74
DDR1-229ENST00000396342 A2MP01023 1474 aa25.89■■□□□ 1.73
DDR1-229ENST00000396342 KIDINS220Q9ULH0 1771 aa25.88■■□□□ 1.73
DDR1-229ENST00000396342 ZMYM3Q14202 1370 aa25.86■■□□□ 1.73
DDR1-229ENST00000396342 ZNF644Q9H582 1327 aaPredicted RBP25.86■■□□□ 1.73
DDR1-229ENST00000396342 TSPY4P0CV99 314 aa25.84■■□□□ 1.73
DDR1-229ENST00000396342 TSPY10P0CW01 314 aa25.84■■□□□ 1.73
DDR1-229ENST00000396342 NPATQ14207 1427 aa25.83■■□□□ 1.73
DDR1-229ENST00000396342 APLP2Q06481 763 aa25.83■■□□□ 1.73
DDR1-229ENST00000396342 SETD1BQ9UPS6 1966 aaKnown RBP25.82■■□□□ 1.72
DDR1-229ENST00000396342 RTEL1-TNFRSF6BF6WH68 1400 aa25.81■■□□□ 1.72
DDR1-229ENST00000396342 TIAM1Q13009 1591 aa25.79■■□□□ 1.72
DDR1-229ENST00000396342 LOC105371045A0A1W2PR82 267 aa25.79■■□□□ 1.72
DDR1-229ENST00000396342 NCOA2Q15596 1464 aa25.78■■□□□ 1.72
DDR1-229ENST00000396342 C3P01024 1663 aa25.77■■□□□ 1.72
DDR1-229ENST00000396342 VPS8Q8N3P4 1428 aa25.76■■□□□ 1.71
DDR1-229ENST00000396342 INO80Q9ULG1 1556 aaPredicted RBP25.76■■□□□ 1.71
DDR1-229ENST00000396342 SUPT6HQ7KZ85 1726 aaKnown RBP25.75■■□□□ 1.71
DDR1-229ENST00000396342 PTPRTO14522 1441 aa25.75■■□□□ 1.71
DDR1-229ENST00000396342 DHX29Q7Z478 1369 aaKnown RBP25.75■■□□□ 1.71
DDR1-229ENST00000396342 KIF3BO15066 747 aa25.75■■□□□ 1.71
DDR1-229ENST00000396342 CCDC141Q6ZP82 1450 aa25.74■■□□□ 1.71
DDR1-229ENST00000396342 MBD5Q9P267 1494 aa25.73■■□□□ 1.71
DDR1-229ENST00000396342 CAMSAP2Q08AD1 1489 aa25.71■■□□□ 1.71
DDR1-229ENST00000396342 MROH2AA6NES4 1674 aa25.71■■□□□ 1.71
DDR1-229ENST00000396342 PLXNC1O60486 1568 aa25.7■■□□□ 1.71
DDR1-229ENST00000396342 WASHC2CQ9Y4E1 1318 aa25.7■■□□□ 1.71
DDR1-229ENST00000396342 ADGBQ8N7X0 1667 aa25.69■■□□□ 1.7
DDR1-229ENST00000396342 PKD2Q13563 968 aa25.69■■□□□ 1.7
DDR1-229ENST00000396342 NCOA1Q15788 1441 aa25.67■■□□□ 1.7
DDR1-229ENST00000396342 LRRC9Q6ZRR7 1453 aa25.66■■□□□ 1.7
DDR1-229ENST00000396342 PTPRKQ15262 1439 aa25.63■■□□□ 1.69
DDR1-229ENST00000396342 CLTCQ00610 1675 aaKnown RBP25.63■■□□□ 1.69
DDR1-229ENST00000396342 NCKAP5LQ9HCH0 1330 aa25.62■■□□□ 1.69
DDR1-229ENST00000396342 CAMSAP1Q5T5Y3 1602 aa25.61■■□□□ 1.69
DDR1-229ENST00000396342 STRCQ7RTU9 1775 aa25.59■■□□□ 1.69
DDR1-229ENST00000396342 MAP3K1Q13233 1512 aa25.58■■□□□ 1.69
DDR1-229ENST00000396342 TNRQ92752 1358 aa25.57■■□□□ 1.68
DDR1-229ENST00000396342 MIA2Q96PC5 1412 aa25.57■■□□□ 1.68
DDR1-229ENST00000396342 FAM135AQ9P2D6 1515 aa25.57■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms