RNA–Protein interactions for RNA: ENST00000396342.6

DDR1-229, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 3

Gene DDR1, Length 675 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-229ENST00000396342 NISCHQ9Y2I1 1504 aa40.26■■■■■ 4.03
DDR1-229ENST00000396342 ABCC9O60706 1549 aa36.06■■■■□ 3.36
DDR1-229ENST00000396342 CCDC180Q9P1Z9 1646 aa36.01■■■■□ 3.36
DDR1-229ENST00000396342 RB1CC1Q8TDY2 1594 aa34.39■■■■□ 3.1
DDR1-229ENST00000396342 DCAF8L2P0C7V8 631 aa34.3■■■■□ 3.08
DDR1-229ENST00000396342 NACADO15069 1562 aa34.15■■■■□ 3.06
DDR1-229ENST00000396342 MYO15BQ96JP2 1530 aa33.68■■■□□ 2.98
DDR1-229ENST00000396342 PABPN1Q86U42 306 aaKnown RBP eCLIP33.66■■■□□ 2.98
DDR1-229ENST00000396342 DNAJC5BQ9UF47 199 aa33.62■■■□□ 2.97
DDR1-229ENST00000396342 ZCCHC6Q5VYS8 1495 aaKnown RBP33.34■■■□□ 2.93
DDR1-229ENST00000396342 DCAF1Q9Y4B6 1507 aa33.26■■■□□ 2.91
DDR1-229ENST00000396342 UNC13AQ9UPW8 1703 aa33.2■■■□□ 2.91
DDR1-229ENST00000396342 BICRAQ9NZM4 1560 aa33.13■■■□□ 2.89
DDR1-229ENST00000396342 SHROOM4Q9ULL8 1493 aa32.97■■■□□ 2.87
DDR1-229ENST00000396342 SCRIBQ14160 1630 aa32.87■■■□□ 2.85
DDR1-229ENST00000396342 CECR2Q9BXF3 1484 aa32.52■■■□□ 2.8
DDR1-229ENST00000396342 CC2D2AQ9P2K1 1620 aa32.48■■■□□ 2.79
DDR1-229ENST00000396342 EIF4G1Q04637 1599 aaKnown RBP32.45■■■□□ 2.78
DDR1-229ENST00000396342 NCAPD3P42695 1498 aa31.52■■■□□ 2.64
DDR1-229ENST00000396342 SMARCA2P51531 1590 aa31.41■■■□□ 2.62
DDR1-229ENST00000396342 ATAD2BQ9ULI0 1458 aa31.4■■■□□ 2.62
DDR1-229ENST00000396342 SMARCA4P51532 1647 aa31.32■■■□□ 2.6
DDR1-229ENST00000396342 BAZ1AQ9NRL2 1556 aaPredicted RBP31.31■■■□□ 2.6
DDR1-229ENST00000396342 ERCC6Q03468 1493 aa31.31■■■□□ 2.6
DDR1-229ENST00000396342 HMGXB3Q12766 1538 aa31.26■■■□□ 2.59
DDR1-229ENST00000396342 BAZ1BQ9UIG0 1483 aaKnown RBP31.21■■■□□ 2.59
DDR1-229ENST00000396342 CUX2O14529 1486 aa31.1■■■□□ 2.57
DDR1-229ENST00000396342 DNAJC5Q9H3Z4 198 aa31.01■■■□□ 2.55
DDR1-229ENST00000396342 PEG3Q9GZU2 1588 aa31■■■□□ 2.55
DDR1-229ENST00000396342 MROH2BQ7Z745 1585 aa30.96■■■□□ 2.55
DDR1-229ENST00000396342 NESP48681 1621 aa30.9■■■□□ 2.54
DDR1-229ENST00000396342 LAMC3Q9Y6N6 1575 aa30.79■■■□□ 2.52
DDR1-229ENST00000396342 PDS5BQ9NTI5 1447 aa30.78■■■□□ 2.52
DDR1-229ENST00000396342 CADPSQ9ULU8 1353 aa30.65■■■□□ 2.5
DDR1-229ENST00000396342 WIZO95785 1651 aa30.54■■■□□ 2.48
DDR1-229ENST00000396342 THOC2Q8NI27 1593 aaKnown RBP30.49■■■□□ 2.47
DDR1-229ENST00000396342 RSF1Q96T23 1441 aaPredicted RBP30.43■■■□□ 2.46
DDR1-229ENST00000396342 KIF21AQ7Z4S6 1674 aa30.4■■■□□ 2.46
DDR1-229ENST00000396342 MRC2Q9UBG0 1479 aa30.39■■■□□ 2.46
DDR1-229ENST00000396342 CEP164Q9UPV0 1460 aa30.32■■■□□ 2.44
DDR1-229ENST00000396342 TOP2AP11388 1531 aaKnown RBP30.28■■■□□ 2.44
DDR1-229ENST00000396342 FANCD2Q9BXW9 1451 aa30.26■■■□□ 2.44
DDR1-229ENST00000396342 CFTRP13569 1480 aa30.23■■■□□ 2.43
DDR1-229ENST00000396342 WDR62O43379 1518 aa30.21■■■□□ 2.43
DDR1-229ENST00000396342 CCDC88BA6NC98 1476 aa29.94■■■□□ 2.38
DDR1-229ENST00000396342 URB2Q14146 1524 aaKnown RBP29.88■■■□□ 2.37
DDR1-229ENST00000396342 OSCARQ8IYS5 282 aa29.86■■■□□ 2.37
DDR1-229ENST00000396342 TRIM41Q8WV44 630 aa29.81■■■□□ 2.36
DDR1-229ENST00000396342 ABCC8Q09428 1581 aa29.75■■■□□ 2.35
DDR1-229ENST00000396342 IFT140Q96RY7 1462 aa29.72■■■□□ 2.35
DDR1-229ENST00000396342 PRDM2Q13029 1718 aa29.71■■■□□ 2.35
DDR1-229ENST00000396342 TOPBP1Q92547 1522 aa29.64■■■□□ 2.34
DDR1-229ENST00000396342 DNMBPQ6XZF7 1577 aa29.54■■■□□ 2.32
DDR1-229ENST00000396342 ZNF608Q9ULD9 1512 aaPredicted RBP29.5■■■□□ 2.31
DDR1-229ENST00000396342 FBLN2P98095 1184 aa29.4■■■□□ 2.3
DDR1-229ENST00000396342 SUPT5HO00267 1087 aaKnown RBP29.39■■■□□ 2.3
DDR1-229ENST00000396342 SOGA1O94964 1423 aa29.34■■■□□ 2.29
DDR1-229ENST00000396342 AQRO60306 1485 aaKnown RBP eCLIP29.34■■■□□ 2.292e-7■■■■■ 31.6
DDR1-229ENST00000396342 POLA1P09884 1462 aaPredicted RBP29.34■■■□□ 2.29
DDR1-229ENST00000396342 EIF4G3O43432 1585 aaKnown RBP29.33■■■□□ 2.29
DDR1-229ENST00000396342 TDRD9Q8NDG6 1382 aaKnown RBP29.24■■■□□ 2.27
DDR1-229ENST00000396342 TARBP1Q13395 1621 aaKnown RBP29.23■■■□□ 2.27
DDR1-229ENST00000396342 RAD54L2Q9Y4B4 1467 aa29.22■■■□□ 2.27
DDR1-229ENST00000396342 FGD5Q6ZNL6 1462 aa29.18■■■□□ 2.26
DDR1-229ENST00000396342 CHMP7Q8WUX9 453 aaPredicted RBP29.18■■■□□ 2.26
DDR1-229ENST00000396342 RIMBP3CA6NJZ7 1639 aa29.14■■■□□ 2.26
DDR1-229ENST00000396342 RIMBP3BA6NNM3 1639 aa29.14■■■□□ 2.26
DDR1-229ENST00000396342 RIMBP3Q9UFD9 1639 aa29.14■■■□□ 2.26
DDR1-229ENST00000396342 ARHGEF11O15085 1522 aa29.14■■■□□ 2.25
DDR1-229ENST00000396342 CYB5RLQ6IPT4 315 aa29.12■■■□□ 2.25
DDR1-229ENST00000396342 WDR97A6NE52 1622 aa29.1■■■□□ 2.25
DDR1-229ENST00000396342 CUX1P39880 1505 aa29.09■■■□□ 2.25
DDR1-229ENST00000396342 GRIN2BQ13224 1484 aa29.06■■■□□ 2.24
DDR1-229ENST00000396342 SNAPC4Q5SXM2 1469 aa29.04■■■□□ 2.24
DDR1-229ENST00000396342 MAGI1Q96QZ7 1491 aaPredicted RBP29.03■■■□□ 2.24
DDR1-229ENST00000396342 CHD1O14646 1710 aa29.01■■■□□ 2.23
DDR1-229ENST00000396342 GAPVD1Q14C86 1478 aa28.94■■■□□ 2.22
DDR1-229ENST00000396342 SYNJ2O15056 1496 aa28.92■■■□□ 2.22
DDR1-229ENST00000396342 WRNQ14191 1432 aaPredicted RBP eCLIP28.92■■■□□ 2.22
DDR1-229ENST00000396342 SYNJ1O43426 1573 aa28.92■■■□□ 2.22
DDR1-229ENST00000396342 TRHP20396 242 aaPredicted RBP28.9■■■□□ 2.22
DDR1-229ENST00000396342 ABCA10Q8WWZ4 1543 aa28.86■■■□□ 2.21
DDR1-229ENST00000396342 ARAP1Q96P48 1450 aa28.82■■■□□ 2.2
DDR1-229ENST00000396342 CLASP1Q7Z460 1538 aa28.74■■■□□ 2.19
DDR1-229ENST00000396342 PBRM1Q86U86 1689 aa28.7■■■□□ 2.19
DDR1-229ENST00000396342 ABCA5Q8WWZ7 1642 aa28.69■■■□□ 2.18
DDR1-229ENST00000396342 TOP2BQ02880 1626 aa28.68■■■□□ 2.18
DDR1-229ENST00000396342 FHAD1B1AJZ9 1412 aa28.61■■■□□ 2.17
DDR1-229ENST00000396342 GRIN2AQ12879 1464 aa28.61■■■□□ 2.17
DDR1-229ENST00000396342 BIVM-ERCC5R4GMW8 1640 aa28.6■■■□□ 2.17
DDR1-229ENST00000396342 ERICH3Q5RHP9 1530 aa28.53■■■□□ 2.16
DDR1-229ENST00000396342 ADAMTS12P58397 1594 aa28.51■■■□□ 2.15
DDR1-229ENST00000396342 NUP160Q12769 1436 aa28.47■■■□□ 2.15
DDR1-229ENST00000396342 CEP170Q5SW79 1584 aa28.38■■■□□ 2.13
DDR1-229ENST00000396342 JPH4Q96JJ6 628 aa28.36■■■□□ 2.13
DDR1-229ENST00000396342 KIF27Q86VH2 1401 aa28.34■■■□□ 2.13
DDR1-229ENST00000396342 PRG4Q92954 1404 aaPredicted RBP28.32■■■□□ 2.12
DDR1-229ENST00000396342 NPM1P06748 294 aaKnown RBP eCLIP28.29■■■□□ 2.12
DDR1-229ENST00000396342 ERCC6L2Q5T890 1561 aa28.24■■■□□ 2.11
DDR1-229ENST00000396342 SHROOM2Q13796 1616 aa28.22■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 97.6 ms