RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 SPAG9O60271 1321 aaKnown RBP4.59□□□□□ -1.67
VPS13C-203ENST00000395896 MPHOSPH9Q99550 1183 aa4.59□□□□□ -1.68
VPS13C-203ENST00000395896 SAMD9Q5K651 1589 aa4.58□□□□□ -1.68
VPS13C-203ENST00000395896 POLR3GLQ9BT43 218 aa4.58□□□□□ -1.68
VPS13C-203ENST00000395896 ARID4BQ4LE39 1312 aaPredicted RBP4.58□□□□□ -1.68
VPS13C-203ENST00000395896 MYT1Q01538 1121 aa4.58□□□□□ -1.68
VPS13C-203ENST00000395896 CCDC144AA2RUR9 1427 aa4.58□□□□□ -1.68
VPS13C-203ENST00000395896 EIF3AQ14152 1382 aaKnown RBP4.58□□□□□ -1.68
VPS13C-203ENST00000395896 ANKRD50Q9ULJ7 1429 aa4.58□□□□□ -1.68
VPS13C-203ENST00000395896 RAPGEF6Q8TEU7 1601 aa4.58□□□□□ -1.68
VPS13C-203ENST00000395896 YTHDC1Q96MU7 727 aaKnown RBP4.58□□□□□ -1.68
VPS13C-203ENST00000395896 PHLDB1Q86UU1 1377 aa4.57□□□□□ -1.68
VPS13C-203ENST00000395896 TMC1Q8TDI8 760 aa4.57□□□□□ -1.68
VPS13C-203ENST00000395896 DHX57Q6P158 1386 aaKnown RBP4.57□□□□□ -1.68
VPS13C-203ENST00000395896 GRWD1Q9BQ67 446 aaKnown RBP eCLIP4.57□□□□□ -1.685e-7■■■□□ 15.9
VPS13C-203ENST00000395896 KIF15Q9NS87 1388 aa4.57□□□□□ -1.68
VPS13C-203ENST00000395896 CCER2I3L3R5 266 aa4.56□□□□□ -1.68
VPS13C-203ENST00000395896 KIAA0556O60303 1618 aa4.56□□□□□ -1.68
VPS13C-203ENST00000395896 PPP1R15AO75807 674 aaPredicted RBP4.56□□□□□ -1.68
VPS13C-203ENST00000395896 CARD11Q9BXL7 1154 aa4.56□□□□□ -1.68
VPS13C-203ENST00000395896 PTPN23Q9H3S7 1636 aa4.56□□□□□ -1.68
VPS13C-203ENST00000395896 NUP160Q12769 1436 aa4.56□□□□□ -1.68
VPS13C-203ENST00000395896 ZNF608Q9ULD9 1512 aaPredicted RBP4.55□□□□□ -1.68
VPS13C-203ENST00000395896 ARHGAP5Q13017 1502 aa4.55□□□□□ -1.68
VPS13C-203ENST00000395896 KTN1Q86UP2 1357 aaKnown RBP4.55□□□□□ -1.68
VPS13C-203ENST00000395896 KNSTRNQ9Y448 316 aa4.55□□□□□ -1.68
VPS13C-203ENST00000395896 DDX10Q13206 875 aaKnown RBP4.55□□□□□ -1.68
VPS13C-203ENST00000395896 PKD2Q13563 968 aa4.55□□□□□ -1.68
VPS13C-203ENST00000395896 TMF1P82094 1093 aa4.54□□□□□ -1.68
VPS13C-203ENST00000395896 CCDC141Q6ZP82 1450 aa4.54□□□□□ -1.68
VPS13C-203ENST00000395896 WASHC2AQ641Q2 1341 aa4.54□□□□□ -1.68
VPS13C-203ENST00000395896 WASHC2CQ9Y4E1 1318 aa4.54□□□□□ -1.68
VPS13C-203ENST00000395896 HAP1P54257 671 aaPredicted RBP4.54□□□□□ -1.68
VPS13C-203ENST00000395896 NGEFQ8N5V2 710 aa4.54□□□□□ -1.68
VPS13C-203ENST00000395896 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.54□□□□□ -1.68
VPS13C-203ENST00000395896 C9orf84Q5VXU9 1444 aa4.54□□□□□ -1.68
VPS13C-203ENST00000395896 DCAF11Q8TEB1 546 aa4.53□□□□□ -1.68
VPS13C-203ENST00000395896 SCAPERQ9BY12 1400 aa4.53□□□□□ -1.68
VPS13C-203ENST00000395896 KIAA1107Q9UPP5 1409 aa4.53□□□□□ -1.68
VPS13C-203ENST00000395896 NAIPQ13075 1403 aa4.53□□□□□ -1.68
VPS13C-203ENST00000395896 PNNQ9H307 717 aaKnown RBP4.53□□□□□ -1.68
VPS13C-203ENST00000395896 BCANQ96GW7 911 aa4.53□□□□□ -1.68
VPS13C-203ENST00000395896 NCOA1Q15788 1441 aa4.52□□□□□ -1.69
VPS13C-203ENST00000395896 PLB1Q6P1J6 1458 aa4.52□□□□□ -1.69
VPS13C-203ENST00000395896 CHGAP10645 457 aaKnown RBP4.52□□□□□ -1.69
VPS13C-203ENST00000395896 DNAJC5BQ9UF47 199 aa4.52□□□□□ -1.69
VPS13C-203ENST00000395896 VGFO15240 615 aaPredicted RBP4.52□□□□□ -1.69
VPS13C-203ENST00000395896 ERICH6BQ5W0A0 696 aa4.52□□□□□ -1.69
VPS13C-203ENST00000395896 SHANK2Q9UPX8 1470 aa4.52□□□□□ -1.69
VPS13C-203ENST00000395896 DAPK1P53355 1430 aa4.52□□□□□ -1.69
VPS13C-203ENST00000395896 KIF3BO15066 747 aa4.52□□□□□ -1.69
VPS13C-203ENST00000395896 ERICH6Q7L0X2 663 aa4.52□□□□□ -1.69
VPS13C-203ENST00000395896 MRS2Q9HD23 443 aa4.52□□□□□ -1.69
VPS13C-203ENST00000395896 CFAP53Q96M91 514 aa4.52□□□□□ -1.69
VPS13C-203ENST00000395896 WDR43Q15061 677 aaKnown RBP eCLIP4.52□□□□□ -1.69
VPS13C-203ENST00000395896 RALBP1Q15311 655 aa4.52□□□□□ -1.69
VPS13C-203ENST00000395896 SLC52A1Q9NWF4 448 aa4.52□□□□□ -1.69
VPS13C-203ENST00000395896 MYO5CQ9NQX4 1742 aa4.52□□□□□ -1.69
VPS13C-203ENST00000395896 KDM2AQ9Y2K7 1162 aa4.51□□□□□ -1.69
VPS13C-203ENST00000395896 HNRNPUQ00839 825 aaKnown RBP eCLIP4.51□□□□□ -1.69
VPS13C-203ENST00000395896 DAXXQ9UER7 740 aaPredicted RBP4.51□□□□□ -1.69
VPS13C-203ENST00000395896 PPP6R1Q9UPN7 881 aa4.51□□□□□ -1.69
VPS13C-203ENST00000395896 HNRNPMP52272 730 aaKnown RBP eCLIP4.51□□□□□ -1.696e-6■■■■□ 20.3
VPS13C-203ENST00000395896 L3MBTL2Q969R5 705 aa4.51□□□□□ -1.69
VPS13C-203ENST00000395896 CHMP4AQ9BY43 222 aa4.51□□□□□ -1.69
VPS13C-203ENST00000395896 CAMSAP2Q08AD1 1489 aa4.5□□□□□ -1.69
VPS13C-203ENST00000395896 EIF5BO60841 1220 aaKnown RBP4.5□□□□□ -1.69
VPS13C-203ENST00000395896 GPATCH8Q9UKJ3 1502 aaKnown RBP4.5□□□□□ -1.69
VPS13C-203ENST00000395896 ABCC2Q92887 1545 aa4.5□□□□□ -1.69
VPS13C-203ENST00000395896 NUP153P49790 1475 aaKnown RBP4.5□□□□□ -1.69
VPS13C-203ENST00000395896 RGL3Q3MIN7 710 aa4.5□□□□□ -1.69
VPS13C-203ENST00000395896 SIN3AQ96ST3 1273 aa4.5□□□□□ -1.69
VPS13C-203ENST00000395896 CHMP4BQ9H444 224 aaKnown RBP4.5□□□□□ -1.69
VPS13C-203ENST00000395896 DNMT1P26358 1616 aaKnown RBP4.5□□□□□ -1.69
VPS13C-203ENST00000395896 TCOF1Q13428 1488 aaKnown RBP4.49□□□□□ -1.69
VPS13C-203ENST00000395896 ADGBQ8N7X0 1667 aa4.49□□□□□ -1.69
VPS13C-203ENST00000395896 CDK13Q14004 1512 aaKnown RBP4.49□□□□□ -1.69
VPS13C-203ENST00000395896 NUDCQ9Y266 331 aa4.49□□□□□ -1.69
VPS13C-203ENST00000395896 ANKRD30BQ9BXX2 1392 aa4.49□□□□□ -1.69
VPS13C-203ENST00000395896 CFAP65Q6ZU64 1925 aaKnown RBP4.49□□□□□ -1.69
VPS13C-203ENST00000395896 RTEL1-TNFRSF6BF6WH68 1400 aa4.49□□□□□ -1.69
VPS13C-203ENST00000395896 GGT6Q6P531 493 aa4.49□□□□□ -1.69
VPS13C-203ENST00000395896 RPRD2Q5VT52 1461 aaKnown RBP4.49□□□□□ -1.69
VPS13C-203ENST00000395896 ZNF518AQ6AHZ1 1483 aa4.49□□□□□ -1.69
VPS13C-203ENST00000395896 DISP1Q96F81 1524 aa4.49□□□□□ -1.69
VPS13C-203ENST00000395896 CFAP74Q9C0B2 1584 aa4.49□□□□□ -1.69
VPS13C-203ENST00000395896 GCC2Q8IWJ2 1684 aa4.49□□□□□ -1.69
VPS13C-203ENST00000395896 NLRP13Q86W25 1043 aa4.49□□□□□ -1.69
VPS13C-203ENST00000395896 ATP10BO94823 1461 aa4.48□□□□□ -1.69
VPS13C-203ENST00000395896 DUOX2Q9NRD8 1548 aa4.48□□□□□ -1.69
VPS13C-203ENST00000395896 ARHGEF11O15085 1522 aa4.48□□□□□ -1.69
VPS13C-203ENST00000395896 ZBTB47Q9UFB7 747 aaPredicted RBP4.48□□□□□ -1.69
VPS13C-203ENST00000395896 SETD1BQ9UPS6 1966 aaKnown RBP4.48□□□□□ -1.69
VPS13C-203ENST00000395896 TEX14Q8IWB6 1497 aa4.48□□□□□ -1.69
VPS13C-203ENST00000395896 ERBINQ96RT1 1412 aa4.48□□□□□ -1.69
VPS13C-203ENST00000395896 MIER1Q8N108 512 aa4.48□□□□□ -1.69
VPS13C-203ENST00000395896 CHD1O14646 1710 aa4.48□□□□□ -1.69
VPS13C-203ENST00000395896 PLCH2O75038 1416 aa4.48□□□□□ -1.69
VPS13C-203ENST00000395896 MS4A1P11836 297 aa4.48□□□□□ -1.69
VPS13C-203ENST00000395896 GTF3C3Q9Y5Q9 886 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms