RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 DENND4BO75064 1496 aaPredicted RBP34.26■■■■□ 3.08
CLN3-207ENST00000395653 ADGRL1O94910 1474 aa34.26■■■■□ 3.08
CLN3-207ENST00000395653 LRRC9Q6ZRR7 1453 aa34.24■■■■□ 3.07
CLN3-207ENST00000395653 GPATCH8Q9UKJ3 1502 aaKnown RBP34.24■■■■□ 3.07
CLN3-207ENST00000395653 FRMPD1Q5SYB0 1578 aa34.24■■■■□ 3.07
CLN3-207ENST00000395653 RAPGEF3O95398 923 aa34.23■■■■□ 3.07
CLN3-207ENST00000395653 CCNB3Q8WWL7 1395 aa34.21■■■■□ 3.07
CLN3-207ENST00000395653 SUPT6HQ7KZ85 1726 aaKnown RBP34.2■■■■□ 3.07
CLN3-207ENST00000395653 SCAPERQ9BY12 1400 aa34.2■■■■□ 3.07
CLN3-207ENST00000395653 RICTORQ6R327 1708 aa34.2■■■■□ 3.06
CLN3-207ENST00000395653 APLP2Q06481 763 aa34.17■■■■□ 3.06
CLN3-207ENST00000395653 NCOA2Q15596 1464 aa34.16■■■■□ 3.06
CLN3-207ENST00000395653 POGZQ7Z3K3 1410 aa34.15■■■■□ 3.06
CLN3-207ENST00000395653 ITSN2Q9NZM3 1697 aa34.13■■■■□ 3.05
CLN3-207ENST00000395653 KANK4Q5T7N3 995 aaPredicted RBP34.13■■■■□ 3.05
CLN3-207ENST00000395653 ZMYM4Q5VZL5 1548 aa34.12■■■■□ 3.05
CLN3-207ENST00000395653 ABCC1P33527 1531 aa34.11■■■■□ 3.05
CLN3-207ENST00000395653 CFDP1Q9UEE9 299 aaPredicted RBP34.1■■■■□ 3.05
CLN3-207ENST00000395653 SAMD9LQ8IVG5 1584 aa34.07■■■■□ 3.04
CLN3-207ENST00000395653 ZNF518AQ6AHZ1 1483 aa34.07■■■■□ 3.04
CLN3-207ENST00000395653 MAGI2Q86UL8 1455 aa34.04■■■■□ 3.04
CLN3-207ENST00000395653 ARHGEF12Q9NZN5 1544 aa34.04■■■■□ 3.04
CLN3-207ENST00000395653 ZNF777Q9ULD5 760 aaPredicted RBP34.04■■■■□ 3.04
CLN3-207ENST00000395653 PLEKHH2Q8IVE3 1493 aa34.02■■■■□ 3.04
CLN3-207ENST00000395653 ARHGEF40Q8TER5 1519 aa34.01■■■■□ 3.04
CLN3-207ENST00000395653 KDM5CP41229 1560 aa34.01■■■■□ 3.04
CLN3-207ENST00000395653 KIAA1107Q9UPP5 1409 aa33.99■■■■□ 3.03
CLN3-207ENST00000395653 ZFYVE16Q7Z3T8 1539 aa33.98■■■■□ 3.03
CLN3-207ENST00000395653 SYCP2Q9BX26 1530 aa33.98■■■■□ 3.03
CLN3-207ENST00000395653 TRAPPC8Q9Y2L5 1435 aa33.98■■■■□ 3.03
CLN3-207ENST00000395653 AFAP1Q8N556 730 aa33.97■■■■□ 3.03
CLN3-207ENST00000395653 YEATS2Q9ULM3 1422 aa33.93■■■■□ 3.02
CLN3-207ENST00000395653 HECW2Q9P2P5 1572 aa33.91■■■■□ 3.02
CLN3-207ENST00000395653 MLH3Q9UHC1 1453 aa33.9■■■■□ 3.02
CLN3-207ENST00000395653 ZNF644Q9H582 1327 aaPredicted RBP33.9■■■■□ 3.02
CLN3-207ENST00000395653 MYOM3Q5VTT5 1437 aa33.9■■■■□ 3.02
CLN3-207ENST00000395653 HNRNPMP52272 730 aaKnown RBP eCLIP33.89■■■■□ 3.02
CLN3-207ENST00000395653 CAMSAP2Q08AD1 1489 aa33.87■■■■□ 3.01
CLN3-207ENST00000395653 MIA2Q96PC5 1412 aa33.86■■■■□ 3.01
CLN3-207ENST00000395653 MBD5Q9P267 1494 aa33.84■■■■□ 3.01
CLN3-207ENST00000395653 KDM4FA0A1W2PPD8 638 aa33.83■■■■□ 3.01
CLN3-207ENST00000395653 ATP10AO60312 1499 aa33.81■■■■□ 3
CLN3-207ENST00000395653 MYT1LQ9UL68 1186 aa33.79■■■■□ 3
CLN3-207ENST00000395653 DIP2CQ9Y2E4 1556 aa33.79■■■■□ 3
CLN3-207ENST00000395653 KIDINS220Q9ULH0 1771 aa33.79■■■■□ 3
CLN3-207ENST00000395653 C9orf84Q5VXU9 1444 aa33.78■■■■□ 3
CLN3-207ENST00000395653 SPAG9O60271 1321 aaKnown RBP33.77■■■■□ 3
CLN3-207ENST00000395653 ABCA6Q8N139 1617 aa33.77■■■■□ 3
CLN3-207ENST00000395653 RSPH4AQ5TD94 716 aa33.75■■■□□ 2.99
CLN3-207ENST00000395653 ARHGEF5Q12774 1597 aa33.75■■■□□ 2.99
CLN3-207ENST00000395653 INO80Q9ULG1 1556 aaPredicted RBP33.75■■■□□ 2.99
CLN3-207ENST00000395653 CCDC141Q6ZP82 1450 aa33.74■■■□□ 2.99
CLN3-207ENST00000395653 REREQ9P2R6 1566 aa33.74■■■□□ 2.99
CLN3-207ENST00000395653 ATP7AQ04656 1500 aa33.74■■■□□ 2.99
CLN3-207ENST00000395653 ARID4BQ4LE39 1312 aaPredicted RBP33.73■■■□□ 2.99
CLN3-207ENST00000395653 SIGLEC1Q9BZZ2 1709 aa33.72■■■□□ 2.99
CLN3-207ENST00000395653 FGD6Q6ZV73 1430 aa33.7■■■□□ 2.99
CLN3-207ENST00000395653 BCORL1Q5H9F3 1711 aa33.69■■■□□ 2.98
CLN3-207ENST00000395653 AEBP2Q6ZN18 517 aaPredicted RBP33.69■■■□□ 2.98
CLN3-207ENST00000395653 PTPN23Q9H3S7 1636 aa33.68■■■□□ 2.98
CLN3-207ENST00000395653 RTEL1-TNFRSF6BF6WH68 1400 aa33.67■■■□□ 2.98
CLN3-207ENST00000395653 ADAMTSL3P82987 1691 aa33.65■■■□□ 2.98
CLN3-207ENST00000395653 TCOF1Q13428 1488 aaKnown RBP33.64■■■□□ 2.98
CLN3-207ENST00000395653 AGLP35573 1532 aa33.61■■■□□ 2.97
CLN3-207ENST00000395653 TSPY4P0CV99 314 aa33.58■■■□□ 2.97
CLN3-207ENST00000395653 TSPY10P0CW01 314 aa33.58■■■□□ 2.97
CLN3-207ENST00000395653 MAST1Q9Y2H9 1570 aa33.56■■■□□ 2.96
CLN3-207ENST00000395653 ADGBQ8N7X0 1667 aa33.56■■■□□ 2.96
CLN3-207ENST00000395653 A2MP01023 1474 aa33.55■■■□□ 2.96
CLN3-207ENST00000395653 PLXNC1O60486 1568 aa33.55■■■□□ 2.96
CLN3-207ENST00000395653 MADDQ8WXG6 1647 aa33.55■■■□□ 2.96
CLN3-207ENST00000395653 PPARGC1BQ86YN6 1023 aaKnown RBP33.53■■■□□ 2.96
CLN3-207ENST00000395653 MLECQ14165 292 aa33.52■■■□□ 2.96
CLN3-207ENST00000395653 DNMT1P26358 1616 aaKnown RBP33.51■■■□□ 2.95
CLN3-207ENST00000395653 SHANK2Q9UPX8 1470 aa33.5■■■□□ 2.95
CLN3-207ENST00000395653 ABCC5O15440 1437 aa33.5■■■□□ 2.95
CLN3-207ENST00000395653 CROCC2H7BZ55 1655 aa33.49■■■□□ 2.95
CLN3-207ENST00000395653 DAPK1P53355 1430 aa33.48■■■□□ 2.95
CLN3-207ENST00000395653 PTPRMP28827 1452 aa33.46■■■□□ 2.95
CLN3-207ENST00000395653 DHX29Q7Z478 1369 aaKnown RBP33.45■■■□□ 2.95
CLN3-207ENST00000395653 FER1L4A9Z1Z3 1794 aa33.44■■■□□ 2.94
CLN3-207ENST00000395653 RIMS1Q86UR5 1692 aaKnown RBP33.43■■■□□ 2.94
CLN3-207ENST00000395653 FAM50AQ14320 339 aaKnown RBP33.43■■■□□ 2.94
CLN3-207ENST00000395653 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.34■■■□□ 2.93
CLN3-207ENST00000395653 DUOX2Q9NRD8 1548 aa33.31■■■□□ 2.92
CLN3-207ENST00000395653 RRBP1Q9P2E9 1410 aaKnown RBP33.3■■■□□ 2.92
CLN3-207ENST00000395653 KIF15Q9NS87 1388 aa33.29■■■□□ 2.92
CLN3-207ENST00000395653 CNTLNQ9NXG0 1405 aa33.29■■■□□ 2.92
CLN3-207ENST00000395653 ESF1Q9H501 851 aaKnown RBP33.28■■■□□ 2.92
CLN3-207ENST00000395653 ADGRL2O95490 1459 aa33.28■■■□□ 2.92
CLN3-207ENST00000395653 ANKRD30AQ9BXX3 1397 aa33.28■■■□□ 2.92
CLN3-207ENST00000395653 EIF2AK4Q9P2K8 1649 aaKnown RBP33.27■■■□□ 2.92
CLN3-207ENST00000395653 KIF3BO15066 747 aa33.27■■■□□ 2.92
CLN3-207ENST00000395653 GGT6Q6P531 493 aa33.27■■■□□ 2.92
CLN3-207ENST00000395653 CHIC2Q9UKJ5 165 aa33.26■■■□□ 2.91
CLN3-207ENST00000395653 PPP6R1Q9UPN7 881 aa33.26■■■□□ 2.91
CLN3-207ENST00000395653 NCOA1Q15788 1441 aa33.25■■■□□ 2.91
CLN3-207ENST00000395653 RRP7BPQ9NSQ0 103 aa33.23■■■□□ 2.91
CLN3-207ENST00000395653 ERBINQ96RT1 1412 aa33.22■■■□□ 2.91
CLN3-207ENST00000395653 MROH2AA6NES4 1674 aa33.21■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms