RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 ITGAEP38570 1179 aa16.08■□□□□ 0.17
CUX1-204ENST00000393824 ZNF644Q9H582 1327 aaPredicted RBP16.08■□□□□ 0.16
CUX1-204ENST00000393824 FAM50AQ14320 339 aaKnown RBP16.07■□□□□ 0.16
CUX1-204ENST00000393824 ABCC10Q5T3U5 1492 aa16.07■□□□□ 0.16
CUX1-204ENST00000393824 ASXL2Q76L83 1435 aa16.05■□□□□ 0.16
CUX1-204ENST00000393824 GPATCH8Q9UKJ3 1502 aaKnown RBP16.05■□□□□ 0.16
CUX1-204ENST00000393824 TTC37Q6PGP7 1564 aa16.04■□□□□ 0.16
CUX1-204ENST00000393824 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.03■□□□□ 0.167e-8■■■■■ 32
CUX1-204ENST00000393824 WDR7Q9Y4E6 1490 aa16.03■□□□□ 0.16
CUX1-204ENST00000393824 PTPRKQ15262 1439 aa16.01■□□□□ 0.15
CUX1-204ENST00000393824 NPM1P06748 294 aaKnown RBP eCLIP16■□□□□ 0.15
CUX1-204ENST00000393824 CFDP1Q9UEE9 299 aaPredicted RBP16■□□□□ 0.15
CUX1-204ENST00000393824 ZNF777Q9ULD5 760 aaPredicted RBP16■□□□□ 0.15
CUX1-204ENST00000393824 PTPN23Q9H3S7 1636 aa15.99■□□□□ 0.15
CUX1-204ENST00000393824 CDC42BPAQ5VT25 1732 aa15.98■□□□□ 0.15
CUX1-204ENST00000393824 MIA2Q96PC5 1412 aa15.97■□□□□ 0.15
CUX1-204ENST00000393824 TCOF1Q13428 1488 aaKnown RBP15.95■□□□□ 0.14
CUX1-204ENST00000393824 DNAJC5Q9H3Z4 198 aa15.94■□□□□ 0.14
CUX1-204ENST00000393824 CDC42BPBQ9Y5S2 1711 aa15.93■□□□□ 0.14
CUX1-204ENST00000393824 CAMSAP2Q08AD1 1489 aa15.93■□□□□ 0.14
CUX1-204ENST00000393824 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.92■□□□□ 0.142e-6■■□□□ 13.4
CUX1-204ENST00000393824 CHIC2Q9UKJ5 165 aa15.92■□□□□ 0.14
CUX1-204ENST00000393824 MAPKBP1O60336 1514 aa15.91■□□□□ 0.14
CUX1-204ENST00000393824 PREX2Q70Z35 1606 aa15.91■□□□□ 0.14
CUX1-204ENST00000393824 PLCH2O75038 1416 aa15.9■□□□□ 0.14
CUX1-204ENST00000393824 ITSN2Q9NZM3 1697 aa15.9■□□□□ 0.14
CUX1-204ENST00000393824 HNRNPMP52272 730 aaKnown RBP eCLIP15.9■□□□□ 0.149e-7■■■□□ 19.2
CUX1-204ENST00000393824 ARHGAP5Q13017 1502 aa15.9■□□□□ 0.14
CUX1-204ENST00000393824 SAMD9LQ8IVG5 1584 aa15.89■□□□□ 0.13
CUX1-204ENST00000393824 ABCC5O15440 1437 aa15.89■□□□□ 0.13
CUX1-204ENST00000393824 ABCA9Q8IUA7 1624 aa15.89■□□□□ 0.13
CUX1-204ENST00000393824 ARHGEF12Q9NZN5 1544 aa15.87■□□□□ 0.13
CUX1-204ENST00000393824 MYO5CQ9NQX4 1742 aa15.86■□□□□ 0.13
CUX1-204ENST00000393824 DAPK1P53355 1430 aa15.86■□□□□ 0.13
CUX1-204ENST00000393824 MBD5Q9P267 1494 aa15.86■□□□□ 0.13
CUX1-204ENST00000393824 DHX57Q6P158 1386 aaKnown RBP15.86■□□□□ 0.13
CUX1-204ENST00000393824 RRP7BPQ9NSQ0 103 aa15.85■□□□□ 0.13
CUX1-204ENST00000393824 SYCP2Q9BX26 1530 aa15.84■□□□□ 0.13
CUX1-204ENST00000393824 FAM69CQ0P6D2 419 aa15.84■□□□□ 0.13
CUX1-204ENST00000393824 CD109Q6YHK3 1445 aa15.83■□□□□ 0.13
CUX1-204ENST00000393824 DNMT1P26358 1616 aaKnown RBP15.83■□□□□ 0.12
CUX1-204ENST00000393824 FANCAO15360 1455 aa15.82■□□□□ 0.12
CUX1-204ENST00000393824 EFCAB2Q5VUJ9 269 aa15.82■□□□□ 0.12
CUX1-204ENST00000393824 RAB3GAP2Q9H2M9 1393 aa15.81■□□□□ 0.12
CUX1-204ENST00000393824 DIP2BQ9P265 1576 aa15.81■□□□□ 0.12
CUX1-204ENST00000393824 TRAPPC8Q9Y2L5 1435 aa15.8■□□□□ 0.12
CUX1-204ENST00000393824 NAIPQ13075 1403 aa15.79■□□□□ 0.12
CUX1-204ENST00000393824 AFAP1Q8N556 730 aa15.79■□□□□ 0.12
CUX1-204ENST00000393824 ABCC1P33527 1531 aa15.78■□□□□ 0.12
CUX1-204ENST00000393824 HFM1A2PYH4 1435 aa15.77■□□□□ 0.12
CUX1-204ENST00000393824 AKNAQ7Z591 1439 aa15.77■□□□□ 0.12
CUX1-204ENST00000393824 SETD5Q9C0A6 1442 aa15.77■□□□□ 0.12
CUX1-204ENST00000393824 ARAP3Q8WWN8 1544 aa15.77■□□□□ 0.12
CUX1-204ENST00000393824 KDM6BO15054 1643 aa15.77■□□□□ 0.11
CUX1-204ENST00000393824 MAP3K4Q9Y6R4 1608 aa15.76■□□□□ 0.11
CUX1-204ENST00000393824 KIAA1107Q9UPP5 1409 aa15.76■□□□□ 0.11
CUX1-204ENST00000393824 C9orf84Q5VXU9 1444 aa15.76■□□□□ 0.11
CUX1-204ENST00000393824 CCDC141Q6ZP82 1450 aa15.75■□□□□ 0.11
CUX1-204ENST00000393824 NCOA1Q15788 1441 aa15.75■□□□□ 0.11
CUX1-204ENST00000393824 RBM19Q9Y4C8 960 aaKnown RBP15.75■□□□□ 0.11
CUX1-204ENST00000393824 ADGRL1O94910 1474 aa15.75■□□□□ 0.11
CUX1-204ENST00000393824 GLI2P10070 1586 aa15.75■□□□□ 0.11
CUX1-204ENST00000393824 SCAPERQ9BY12 1400 aa15.75■□□□□ 0.11
CUX1-204ENST00000393824 ARHGEF5Q12774 1597 aa15.74■□□□□ 0.11
CUX1-204ENST00000393824 CROCC2H7BZ55 1655 aa15.74■□□□□ 0.11
CUX1-204ENST00000393824 KIF13AQ9H1H9 1805 aa15.72■□□□□ 0.11
CUX1-204ENST00000393824 RAPGEF3O95398 923 aa15.72■□□□□ 0.11
CUX1-204ENST00000393824 TSPY4P0CV99 314 aa15.72■□□□□ 0.11
CUX1-204ENST00000393824 TSPY10P0CW01 314 aa15.72■□□□□ 0.11
CUX1-204ENST00000393824 TSPOAP1O95153 1857 aa15.71■□□□□ 0.11
CUX1-204ENST00000393824 ROCK1Q13464 1354 aa15.71■□□□□ 0.11
CUX1-204ENST00000393824 PLEKHH2Q8IVE3 1493 aa15.7■□□□□ 0.1
CUX1-204ENST00000393824 PPRC1Q5VV67 1664 aaKnown RBP15.7■□□□□ 0.1
CUX1-204ENST00000393824 ADGRL2O95490 1459 aa15.7■□□□□ 0.1
CUX1-204ENST00000393824 SHANK2Q9UPX8 1470 aa15.7■□□□□ 0.1
CUX1-204ENST00000393824 FKBP8Q14318 412 aa15.69■□□□□ 0.1
CUX1-204ENST00000393824 KIF15Q9NS87 1388 aa15.67■□□□□ 0.1
CUX1-204ENST00000393824 RSPH4AQ5TD94 716 aa15.67■□□□□ 0.1
CUX1-204ENST00000393824 BCANQ96GW7 911 aa15.67■□□□□ 0.1
CUX1-204ENST00000393824 ANKRD30AQ9BXX3 1397 aa15.67■□□□□ 0.1
CUX1-204ENST00000393824 GCC2Q8IWJ2 1684 aa15.66■□□□□ 0.1
CUX1-204ENST00000393824 NEO1Q92859 1461 aa15.65■□□□□ 0.1
CUX1-204ENST00000393824 SPAG9O60271 1321 aaKnown RBP15.65■□□□□ 0.1
CUX1-204ENST00000393824 COL17A1Q9UMD9 1497 aaPredicted RBP15.65■□□□□ 0.1
CUX1-204ENST00000393824 POGZQ7Z3K3 1410 aa15.65■□□□□ 0.1
CUX1-204ENST00000393824 ADGBQ8N7X0 1667 aa15.65■□□□□ 0.1
CUX1-204ENST00000393824 ZFYVE16Q7Z3T8 1539 aa15.64■□□□□ 0.09
CUX1-204ENST00000393824 TRHP20396 242 aaPredicted RBP15.64■□□□□ 0.09
CUX1-204ENST00000393824 ANKRD50Q9ULJ7 1429 aa15.64■□□□□ 0.09
CUX1-204ENST00000393824 MAST1Q9Y2H9 1570 aa15.63■□□□□ 0.09
CUX1-204ENST00000393824 DENND4BO75064 1496 aaPredicted RBP15.61■□□□□ 0.09
CUX1-204ENST00000393824 ZNF518AQ6AHZ1 1483 aa15.61■□□□□ 0.09
CUX1-204ENST00000393824 CFAP74Q9C0B2 1584 aa15.6■□□□□ 0.09
CUX1-204ENST00000393824 INO80Q9ULG1 1556 aaPredicted RBP15.6■□□□□ 0.09
CUX1-204ENST00000393824 ATP7AQ04656 1500 aa15.6■□□□□ 0.09
CUX1-204ENST00000393824 NEFLP07196 543 aa15.6■□□□□ 0.09
CUX1-204ENST00000393824 TRIM52Q96A61 297 aa15.6■□□□□ 0.09
CUX1-204ENST00000393824 MYT1LQ9UL68 1186 aa15.6■□□□□ 0.09
CUX1-204ENST00000393824 KDM5CP41229 1560 aa15.6■□□□□ 0.09
CUX1-204ENST00000393824 FRMPD1Q5SYB0 1578 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms