RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.85□□□□□ -0.515e-24■■■■■ 156.6
CUX1-204ENST00000393824 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.72□□□□□ -0.538e-7■■■■■ 154.8
CUX1-204ENST00000393824 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.87□□□□□ -0.516e-7■■■■■ 139.2
CUX1-204ENST00000393824 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.18□□□□□ -0.463e-7■■■■■ 94
CUX1-204ENST00000393824 NIPBLQ6KC79 2804 aaeCLIP8.44□□□□□ -1.063e-10■■■■■ 76.4
CUX1-204ENST00000393824 PABPC4Q13310 644 aaKnown RBP eCLIP11.91□□□□□ -0.53e-25■■■■■ 66.3
CUX1-204ENST00000393824 NIP7Q9Y221 180 aaKnown RBP eCLIP13.16□□□□□ -0.32e-10■■■■■ 60.1
CUX1-204ENST00000393824 SF3B1O75533 1304 aaKnown RBP eCLIP11.41□□□□□ -0.584e-6■■■■■ 58.5
CUX1-204ENST00000393824 AGGF1Q8N302 714 aaeCLIP11.86□□□□□ -0.512e-7■■■■■ 57.8
CUX1-204ENST00000393824 WRNQ14191 1432 aaPredicted RBP eCLIP17.77■□□□□ 0.442e-6■■■■■ 54.1
CUX1-204ENST00000393824 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.01□□□□□ -0.656e-7■■■■■ 53.4
CUX1-204ENST00000393824 AARSP49588 968 aaKnown RBP eCLIP12.55□□□□□ -0.42e-6■■■■■ 51.2
CUX1-204ENST00000393824 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.62□□□□□ -0.396e-12■■■■■ 49.8
CUX1-204ENST00000393824 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.32□□□□□ -0.446e-7■■■■■ 48.9
CUX1-204ENST00000393824 RPS11P62280 158 aaKnown RBP eCLIP10.14□□□□□ -0.796e-6■■■■■ 44.3
CUX1-204ENST00000393824 PTBP1P26599 531 aaKnown RBP eCLIP10.55□□□□□ -0.724e-11■■■■■ 42.8
CUX1-204ENST00000393824 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.54□□□□□ -0.564e-7■■■■■ 40.8
CUX1-204ENST00000393824 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.5□□□□□ -0.736e-6■■■■■ 38.3
CUX1-204ENST00000393824 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.22□□□□□ -0.456e-12■■■■■ 38.3
CUX1-204ENST00000393824 PCBP1Q15365 356 aaKnown RBP eCLIP11.36□□□□□ -0.596e-6■■■■■ 34.5
CUX1-204ENST00000393824 DKC1O60832 514 aaKnown RBP eCLIP11.61□□□□□ -0.551e-7■■■■■ 34.5
CUX1-204ENST00000393824 PCBP2Q15366 365 aaKnown RBP eCLIP10.68□□□□□ -0.71e-6■■■■■ 33.2
CUX1-204ENST00000393824 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.95□□□□□ -0.668e-7■■■■■ 33
CUX1-204ENST00000393824 EIF4G2P78344 907 aaKnown RBP eCLIP14.97□□□□□ -0.011e-6■■■■■ 32.2
CUX1-204ENST00000393824 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.03■□□□□ 0.167e-8■■■■■ 32
CUX1-204ENST00000393824 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.63□□□□□ -0.711e-6■■■■■ 31.5
CUX1-204ENST00000393824 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.62□□□□□ -0.552e-6■■■■■ 29.2
CUX1-204ENST00000393824 HNRNPLP14866 589 aaKnown RBP eCLIP11□□□□□ -0.656e-8■■■■■ 28.9
CUX1-204ENST00000393824 SRSF7Q16629 238 aaKnown RBP eCLIP9.43□□□□□ -0.91e-8■■■■■ 28.4
CUX1-204ENST00000393824 U2AF2P26368 475 aaKnown RBP eCLIP13.28□□□□□ -0.281e-7■■■■■ 27.9
CUX1-204ENST00000393824 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.87□□□□□ -0.513e-7■■■■■ 27.8
CUX1-204ENST00000393824 AATFQ9NY61 560 aaKnown RBP eCLIP12.63□□□□□ -0.391e-6■■■■■ 27.8
CUX1-204ENST00000393824 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.62□□□□□ -1.033e-7■■■■■ 26.8
CUX1-204ENST00000393824 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.31□□□□□ -0.61e-8■■■■□ 26.3
CUX1-204ENST00000393824 AQRO60306 1485 aaKnown RBP eCLIP17.25■□□□□ 0.354e-7■■■■□ 26.1
CUX1-204ENST00000393824 TARDBPQ13148 414 aaKnown RBP eCLIP10.79□□□□□ -0.689e-7■■■■□ 26.1
CUX1-204ENST00000393824 ZC3H11AO75152 810 aaKnown RBP eCLIP11.51□□□□□ -0.573e-6■■■■□ 25.7
CUX1-204ENST00000393824 METAP2P50579 478 aaKnown RBP eCLIP12.43□□□□□ -0.423e-6■■■■□ 24.7
CUX1-204ENST00000393824 HNRNPKP61978 463 aaKnown RBP eCLIP10.14□□□□□ -0.791e-6■■■■□ 24.1
CUX1-204ENST00000393824 FUSP35637 526 aaKnown RBP eCLIP7.41□□□□□ -1.225e-7■■■■□ 23.7
CUX1-204ENST00000393824 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.76□□□□□ -0.692e-10■■■■□ 23.5
CUX1-204ENST00000393824 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.07□□□□□ -0.641e-6■■■■□ 23.3
CUX1-204ENST00000393824 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.93□□□□□ -0.54e-6■■■■□ 23.2
CUX1-204ENST00000393824 MATR3P43243 847 aaKnown RBP eCLIP12.18□□□□□ -0.465e-7■■■■□ 22.9
CUX1-204ENST00000393824 QKIQ96PU8 341 aaKnown RBP eCLIP11.15□□□□□ -0.626e-15■■■■□ 22.1
CUX1-204ENST00000393824 HNRNPUQ00839 825 aaKnown RBP eCLIP15.17■□□□□ 0.021e-6■■■■□ 21.8
CUX1-204ENST00000393824 ILF3Q12906 894 aaKnown RBP eCLIP10.19□□□□□ -0.784e-7■■■■□ 21.7
CUX1-204ENST00000393824 FMR1Q06787 632 aaKnown RBP eCLIP12.46□□□□□ -0.414e-6■■■■□ 21.6
CUX1-204ENST00000393824 LARP4Q71RC2 724 aaKnown RBP eCLIP11□□□□□ -0.659e-6■■■■□ 21.5
CUX1-204ENST00000393824 AKAP1Q92667 903 aaKnown RBP eCLIP10.57□□□□□ -0.721e-6■■■■□ 21.5
CUX1-204ENST00000393824 TIA1P31483 386 aaKnown RBP eCLIP10.39□□□□□ -0.751e-6■■■■□ 21
CUX1-204ENST00000393824 EFTUD2Q15029 972 aaKnown RBP eCLIP11.47□□□□□ -0.578e-8■■■■□ 20.9
CUX1-204ENST00000393824 SF3B4Q15427 424 aaKnown RBP eCLIP11.1□□□□□ -0.635e-6■■■■□ 20.8
CUX1-204ENST00000393824 SFPQP23246 707 aaKnown RBP eCLIP12.79□□□□□ -0.361e-6■■■■□ 20.4
CUX1-204ENST00000393824 RBM15Q96T37 977 aaKnown RBP eCLIP11.61□□□□□ -0.551e-11■■■■□ 20.4
CUX1-204ENST00000393824 RPS3P23396 243 aaKnown RBP eCLIP10.58□□□□□ -0.721e-7■■■■□ 20.3
CUX1-204ENST00000393824 KHSRPQ92945 711 aaKnown RBP eCLIP11.12□□□□□ -0.633e-7■■■■□ 19.9
CUX1-204ENST00000393824 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.03□□□□□ -0.643e-6■■■■□ 19.4
CUX1-204ENST00000393824 HNRNPMP52272 730 aaKnown RBP eCLIP15.9■□□□□ 0.149e-7■■■□□ 19.2
CUX1-204ENST00000393824 YBX3P16989 372 aaKnown RBP eCLIP12.61□□□□□ -0.395e-6■■■□□ 19.1
CUX1-204ENST00000393824 RBM5P52756 815 aaKnown RBP eCLIP12.51□□□□□ -0.414e-7■■■□□ 19.1
CUX1-204ENST00000393824 GTF2F1P35269 517 aaKnown RBP eCLIP13.51□□□□□ -0.252e-8■■■□□ 18.7
CUX1-204ENST00000393824 NONOQ15233 471 aaKnown RBP eCLIP12.01□□□□□ -0.491e-6■■■□□ 18.5
CUX1-204ENST00000393824 CSTF2P33240 577 aaKnown RBP eCLIP10.67□□□□□ -0.72e-6■■■□□ 18.4
CUX1-204ENST00000393824 RBFOX2O43251 390 aaKnown RBP eCLIP9.3□□□□□ -0.926e-7■■■□□ 18.3
CUX1-204ENST00000393824 PPIGQ13427 754 aaKnown RBP eCLIP11.14□□□□□ -0.638e-7■■■□□ 18.1
CUX1-204ENST00000393824 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.45□□□□□ -0.423e-7■■■□□ 17.9
CUX1-204ENST00000393824 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.09□□□□□ -0.474e-7■■■□□ 17.6
CUX1-204ENST00000393824 LSM11P83369 360 aaKnown RBP eCLIP10.28□□□□□ -0.765e-6■■■□□ 16.8
CUX1-204ENST00000393824 DDX6P26196 483 aaKnown RBP eCLIP10.76□□□□□ -0.699e-7■■■□□ 16.7
CUX1-204ENST00000393824 EIF3HO15372 352 aaKnown RBP eCLIP12.43□□□□□ -0.421e-7■■■□□ 16.5
CUX1-204ENST00000393824 NKRFO15226 690 aaKnown RBP eCLIP12.04□□□□□ -0.486e-7■■■□□ 16.5
CUX1-204ENST00000393824 EWSR1Q01844 656 aaKnown RBP eCLIP9.62□□□□□ -0.872e-6■■■□□ 16.3
CUX1-204ENST00000393824 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.66□□□□□ -0.387e-7■■■□□ 15.6
CUX1-204ENST00000393824 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.98□□□□□ -0.491e-6■■■□□ 15.3
CUX1-204ENST00000393824 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.78□□□□□ -0.684e-7■■■□□ 15
CUX1-204ENST00000393824 PUM1Q14671 1186 aaKnown RBP eCLIP10.4□□□□□ -0.745e-7■■■□□ 14.6
CUX1-204ENST00000393824 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.67□□□□□ -0.79e-7■■□□□ 14.3
CUX1-204ENST00000393824 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.52■□□□□ 0.081e-6■■□□□ 13.7
CUX1-204ENST00000393824 HNRNPCP07910 306 aaKnown RBP eCLIP11.51□□□□□ -0.577e-7■■□□□ 13.7
CUX1-204ENST00000393824 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.68□□□□□ -0.863e-6■■□□□ 13.5
CUX1-204ENST00000393824 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.92■□□□□ 0.142e-6■■□□□ 13.4
CUX1-204ENST00000393824 DDX3XO00571 662 aaKnown RBP eCLIP11.82□□□□□ -0.521e-8■■□□□ 13.3
CUX1-204ENST00000393824 ZNF622Q969S3 477 aaKnown RBP eCLIP12.84□□□□□ -0.351e-7■■□□□ 13.1
CUX1-204ENST00000393824 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.67□□□□□ -0.227e-7■■□□□ 13.1
CUX1-204ENST00000393824 NCBP2P52298 156 aaKnown RBP eCLIP10.13□□□□□ -0.792e-6■■□□□ 13
CUX1-204ENST00000393824 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.88□□□□□ -0.358e-7■■□□□ 12.7
CUX1-204ENST00000393824 NOLC1Q14978 699 aaKnown RBP eCLIP13.42□□□□□ -0.263e-6■■□□□ 12.3
CUX1-204ENST00000393824 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.45□□□□□ -0.261e-9■■□□□ 12.2
CUX1-204ENST00000393824 SMNDC1O75940 238 aaKnown RBP eCLIP12.08□□□□□ -0.481e-5■■□□□ 11.9
CUX1-204ENST00000393824 TROVE2P10155 538 aaKnown RBP eCLIP11.64□□□□□ -0.553e-6■■□□□ 11.8
CUX1-204ENST00000393824 PRPF4O43172 522 aaKnown RBP eCLIP11.7□□□□□ -0.543e-6■■□□□ 11.6
CUX1-204ENST00000393824 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.82□□□□□ -0.844e-6■■□□□ 11.4
CUX1-204ENST00000393824 U2AF1Q01081 240 aaKnown RBP eCLIP14.06□□□□□ -0.165e-6■□□□□ 11.2
CUX1-204ENST00000393824 DDX21Q9NR30 783 aaKnown RBP eCLIP13.4□□□□□ -0.261e-7■□□□□ 10.9
CUX1-204ENST00000393824 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.37□□□□□ -0.113e-6■□□□□ 10.3
CUX1-204ENST00000393824 GPKOWQ92917 476 aaPredicted RBP eCLIP12.22□□□□□ -0.457e-6■□□□□ 10
CUX1-204ENST00000393824 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.96□□□□□ -0.347e-6■□□□□ 9.2
CUX1-204ENST00000393824 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.2□□□□□ -0.623e-6■□□□□ 8.8
Retrieved 99 of 99 RNA–protein pairs in 33.5 ms