RNA–Protein interactions for RNA: ENST00000389418.8

PTPRN2-203, Transcript of protein tyrosine phosphatase, receptor type N2, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRN2, Length 4,706 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN2-203ENST00000389418 NESP48681 1621 aa16.99■□□□□ 0.31
PTPRN2-203ENST00000389418 PNNQ9H307 717 aaKnown RBP16.99■□□□□ 0.31
PTPRN2-203ENST00000389418 ANKRD30AQ9BXX3 1397 aa16.97■□□□□ 0.31
PTPRN2-203ENST00000389418 MPHOSPH9Q99550 1183 aa16.97■□□□□ 0.31
PTPRN2-203ENST00000389418 RAD54L2Q9Y4B4 1467 aa16.97■□□□□ 0.31
PTPRN2-203ENST00000389418 MAPK8IP3Q9UPT6 1336 aa16.97■□□□□ 0.31
PTPRN2-203ENST00000389418 EIF5BO60841 1220 aaKnown RBP16.97■□□□□ 0.31
PTPRN2-203ENST00000389418 DNAJC5BQ9UF47 199 aa16.97■□□□□ 0.31
PTPRN2-203ENST00000389418 FRAT1Q92837 279 aaPredicted RBP16.96■□□□□ 0.31
PTPRN2-203ENST00000389418 PAK3O75914 559 aaPredicted RBP16.95■□□□□ 0.3
PTPRN2-203ENST00000389418 HSPA5P11021 654 aaKnown RBP16.95■□□□□ 0.3
PTPRN2-203ENST00000389418 IGF1RP08069 1367 aa16.94■□□□□ 0.3
PTPRN2-203ENST00000389418 GAPVD1Q14C86 1478 aa16.93■□□□□ 0.3
PTPRN2-203ENST00000389418 CHMP4BQ9H444 224 aaKnown RBP16.93■□□□□ 0.3
PTPRN2-203ENST00000389418 NBR1Q14596 966 aa16.92■□□□□ 0.3
PTPRN2-203ENST00000389418 UNC13AQ9UPW8 1703 aa16.92■□□□□ 0.3
PTPRN2-203ENST00000389418 SPAG9O60271 1321 aaKnown RBP16.92■□□□□ 0.3
PTPRN2-203ENST00000389418 CCDC18Q5T9S5 1454 aa16.91■□□□□ 0.3
PTPRN2-203ENST00000389418 WASHC2CQ9Y4E1 1318 aa16.91■□□□□ 0.3
PTPRN2-203ENST00000389418 OSCARQ8IYS5 282 aa16.9■□□□□ 0.3
PTPRN2-203ENST00000389418 MS4A1P11836 297 aa16.89■□□□□ 0.3
PTPRN2-203ENST00000389418 L3MBTL2Q969R5 705 aa16.88■□□□□ 0.29
PTPRN2-203ENST00000389418 AQRO60306 1485 aaKnown RBP eCLIP16.87■□□□□ 0.295e-7■■■■■ 27.2
PTPRN2-203ENST00000389418 MORC1Q86VD1 984 aa16.85■□□□□ 0.29
PTPRN2-203ENST00000389418 ZNF644Q9H582 1327 aaPredicted RBP16.85■□□□□ 0.29
PTPRN2-203ENST00000389418 PTPRGP23470 1445 aa16.85■□□□□ 0.29
PTPRN2-203ENST00000389418 TAOK2Q9UL54 1235 aa16.84■□□□□ 0.29
PTPRN2-203ENST00000389418 FTSJ3Q8IY81 847 aaKnown RBP16.84■□□□□ 0.29
PTPRN2-203ENST00000389418 TRAK1Q9UPV9 953 aa16.83■□□□□ 0.29
PTPRN2-203ENST00000389418 RGS3P49796 1198 aa16.83■□□□□ 0.28
PTPRN2-203ENST00000389418 CCER2I3L3R5 266 aa16.82■□□□□ 0.28
PTPRN2-203ENST00000389418 MRC2Q9UBG0 1479 aa16.82■□□□□ 0.28
PTPRN2-203ENST00000389418 BECN1Q14457 450 aa16.81■□□□□ 0.28
PTPRN2-203ENST00000389418 TPRNQ4KMQ1 711 aa16.81■□□□□ 0.28
PTPRN2-203ENST00000389418 PPP4R2Q9NY27 417 aa16.8■□□□□ 0.28
PTPRN2-203ENST00000389418 PEG3Q9GZU2 1588 aa16.8■□□□□ 0.28
PTPRN2-203ENST00000389418 NPHP1O15259 732 aa16.8■□□□□ 0.28
PTPRN2-203ENST00000389418 DDRGK1Q96HY6 314 aa16.8■□□□□ 0.28
PTPRN2-203ENST00000389418 SYNJ1O43426 1573 aa16.8■□□□□ 0.28
PTPRN2-203ENST00000389418 HDGFL2Q7Z4V5 671 aaPredicted RBP16.79■□□□□ 0.28
PTPRN2-203ENST00000389418 TOPBP1Q92547 1522 aa16.79■□□□□ 0.28
PTPRN2-203ENST00000389418 ZNF330Q9Y3S2 320 aaPredicted RBP16.78■□□□□ 0.28
PTPRN2-203ENST00000389418 ROCK2O75116 1388 aaKnown RBP16.78■□□□□ 0.28
PTPRN2-203ENST00000389418 FAM69CQ0P6D2 419 aa16.78■□□□□ 0.28
PTPRN2-203ENST00000389418 B4GALNT3Q6L9W6 998 aa16.78■□□□□ 0.28
PTPRN2-203ENST00000389418 CASC1Q6TDU7 716 aa16.78■□□□□ 0.28
PTPRN2-203ENST00000389418 EIF3AQ14152 1382 aaKnown RBP16.77■□□□□ 0.28
PTPRN2-203ENST00000389418 LTV1Q96GA3 475 aaPredicted RBP16.76■□□□□ 0.27
PTPRN2-203ENST00000389418 U2AF1L5P0DN76 240 aaPredicted RBP16.75■□□□□ 0.27
PTPRN2-203ENST00000389418 U2AF1Q01081 240 aaKnown RBP eCLIP16.75■□□□□ 0.27
PTPRN2-203ENST00000389418 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.75■□□□□ 0.278e-7■■■□□ 16.5
PTPRN2-203ENST00000389418 CUX1P39880 1505 aa16.75■□□□□ 0.27
PTPRN2-203ENST00000389418 GRIN2BQ13224 1484 aa16.75■□□□□ 0.27
PTPRN2-203ENST00000389418 CSB-PGBD3P0DP91 1061 aa16.74■□□□□ 0.27
PTPRN2-203ENST00000389418 ANP32EQ9BTT0 268 aa16.74■□□□□ 0.27
PTPRN2-203ENST00000389418 POLA1P09884 1462 aaPredicted RBP16.74■□□□□ 0.27
PTPRN2-203ENST00000389418 KTN1Q86UP2 1357 aaKnown RBP16.73■□□□□ 0.27
PTPRN2-203ENST00000389418 DHX57Q6P158 1386 aaKnown RBP16.73■□□□□ 0.27
PTPRN2-203ENST00000389418 APBB1O00213 710 aa16.72■□□□□ 0.27
PTPRN2-203ENST00000389418 LAMC3Q9Y6N6 1575 aa16.72■□□□□ 0.27
PTPRN2-203ENST00000389418 IFT140Q96RY7 1462 aa16.71■□□□□ 0.27
PTPRN2-203ENST00000389418 CHMP4AQ9BY43 222 aa16.71■□□□□ 0.27
PTPRN2-203ENST00000389418 CCDC9Q9Y3X0 531 aaKnown RBP16.71■□□□□ 0.27
PTPRN2-203ENST00000389418 TOP2BQ02880 1626 aa16.71■□□□□ 0.27
PTPRN2-203ENST00000389418 RALBP1Q15311 655 aa16.71■□□□□ 0.27
PTPRN2-203ENST00000389418 NGDNQ8NEJ9 315 aaKnown RBP16.7■□□□□ 0.26
PTPRN2-203ENST00000389418 EID1Q9Y6B2 187 aa16.7■□□□□ 0.26
PTPRN2-203ENST00000389418 ST20-MTHFSA0A0A6YYL1 179 aa16.7■□□□□ 0.26
PTPRN2-203ENST00000389418 CALD1Q05682 793 aaKnown RBP16.69■□□□□ 0.26
PTPRN2-203ENST00000389418 AFAP1Q8N556 730 aa16.69■□□□□ 0.26
PTPRN2-203ENST00000389418 CCDC146Q8IYE0 955 aa16.68■□□□□ 0.26
PTPRN2-203ENST00000389418 GOLGA6L22H0YM25 854 aa16.68■□□□□ 0.26
PTPRN2-203ENST00000389418 DNMBPQ6XZF7 1577 aa16.67■□□□□ 0.26
PTPRN2-203ENST00000389418 NCLP19338 710 aaKnown RBP16.67■□□□□ 0.26
PTPRN2-203ENST00000389418 TERF2IPQ9NYB0 399 aa16.66■□□□□ 0.26
PTPRN2-203ENST00000389418 OS9Q13438 667 aaPredicted RBP16.65■□□□□ 0.26
PTPRN2-203ENST00000389418 UACAQ9BZF9 1416 aa16.65■□□□□ 0.26
PTPRN2-203ENST00000389418 RTF1Q92541 710 aaKnown RBP16.65■□□□□ 0.26
PTPRN2-203ENST00000389418 MINK1Q8N4C8 1332 aaPredicted RBP16.64■□□□□ 0.25
PTPRN2-203ENST00000389418 CFAP44Q96MT7 982 aa16.62■□□□□ 0.25
PTPRN2-203ENST00000389418 RRP7AQ9Y3A4 280 aaKnown RBP16.62■□□□□ 0.25
PTPRN2-203ENST00000389418 IPO8O15397 1037 aaKnown RBP16.61■□□□□ 0.25
PTPRN2-203ENST00000389418 CLUAP1Q96AJ1 413 aa16.6■□□□□ 0.25
PTPRN2-203ENST00000389418 PRXQ9BXM0 1461 aa16.59■□□□□ 0.25
PTPRN2-203ENST00000389418 CCDC144AA2RUR9 1427 aa16.59■□□□□ 0.25
PTPRN2-203ENST00000389418 ERICH3Q5RHP9 1530 aa16.59■□□□□ 0.25
PTPRN2-203ENST00000389418 ELL2O00472 640 aaPredicted RBP16.58■□□□□ 0.24
PTPRN2-203ENST00000389418 TULP1O00294 542 aaPredicted RBP16.57■□□□□ 0.24
PTPRN2-203ENST00000389418 ERICH6BQ5W0A0 696 aa16.57■□□□□ 0.24
PTPRN2-203ENST00000389418 STAC3Q96MF2 364 aa16.57■□□□□ 0.24
PTPRN2-203ENST00000389418 VGFO15240 615 aaPredicted RBP16.57■□□□□ 0.24
PTPRN2-203ENST00000389418 KIF21BO75037 1637 aa16.57■□□□□ 0.24
PTPRN2-203ENST00000389418 MYOM3Q5VTT5 1437 aa16.56■□□□□ 0.24
PTPRN2-203ENST00000389418 AMPHP49418 695 aa16.55■□□□□ 0.24
PTPRN2-203ENST00000389418 PANK3Q9H999 370 aa16.55■□□□□ 0.24
PTPRN2-203ENST00000389418 TMEM132EQ6IEE7 984 aa16.55■□□□□ 0.24
PTPRN2-203ENST00000389418 RCAN3Q9UKA8 241 aa16.55■□□□□ 0.24
PTPRN2-203ENST00000389418 ABCA10Q8WWZ4 1543 aa16.55■□□□□ 0.24
PTPRN2-203ENST00000389418 NLRP13Q86W25 1043 aa16.54■□□□□ 0.24
PTPRN2-203ENST00000389418 SNAPC4Q5SXM2 1469 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms