RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 HNRNPUQ00839 825 aaKnown RBP eCLIP22.68■■□□□ 1.22
NKX3-1-201ENST00000380871 WASHC2AQ641Q2 1341 aa22.67■■□□□ 1.22
NKX3-1-201ENST00000380871 RBM19Q9Y4C8 960 aaKnown RBP22.67■■□□□ 1.22
NKX3-1-201ENST00000380871 DENND4BO75064 1496 aaPredicted RBP22.67■■□□□ 1.22
NKX3-1-201ENST00000380871 HSPA5P11021 654 aaKnown RBP22.67■■□□□ 1.22
NKX3-1-201ENST00000380871 SLC4A1APQ9BWU0 796 aaKnown RBP22.66■■□□□ 1.22
NKX3-1-201ENST00000380871 NUP153P49790 1475 aaKnown RBP22.66■■□□□ 1.22
NKX3-1-201ENST00000380871 KDM6BO15054 1643 aa22.65■■□□□ 1.22
NKX3-1-201ENST00000380871 PLEKHD1A6NEE1 506 aa22.63■■□□□ 1.21
NKX3-1-201ENST00000380871 KIAA0556O60303 1618 aa22.63■■□□□ 1.21
NKX3-1-201ENST00000380871 CNGB1Q14028 1251 aaPredicted RBP22.62■■□□□ 1.21
NKX3-1-201ENST00000380871 ZNF326Q5BKZ1 582 aaKnown RBP22.62■■□□□ 1.21
NKX3-1-201ENST00000380871 SYNJ2O15056 1496 aa22.61■■□□□ 1.21
NKX3-1-201ENST00000380871 L3MBTL2Q969R5 705 aa22.61■■□□□ 1.21
NKX3-1-201ENST00000380871 CCDC184Q52MB2 194 aa22.6■■□□□ 1.21
NKX3-1-201ENST00000380871 CARMIL2Q6F5E8 1435 aa22.59■■□□□ 1.21
NKX3-1-201ENST00000380871 ARHGEF11O15085 1522 aa22.59■■□□□ 1.21
NKX3-1-201ENST00000380871 CEP170Q5SW79 1584 aa22.57■■□□□ 1.2
NKX3-1-201ENST00000380871 MAGI1Q96QZ7 1491 aaPredicted RBP22.57■■□□□ 1.2
NKX3-1-201ENST00000380871 MIA2Q96PC5 1412 aa22.57■■□□□ 1.2
NKX3-1-201ENST00000380871 C11orf95C9JLR9 678 aaPredicted RBP22.56■■□□□ 1.2
NKX3-1-201ENST00000380871 ABCC5O15440 1437 aa22.55■■□□□ 1.2
NKX3-1-201ENST00000380871 DAPK1P53355 1430 aa22.55■■□□□ 1.2
NKX3-1-201ENST00000380871 TCOF1Q13428 1488 aaKnown RBP22.55■■□□□ 1.2
NKX3-1-201ENST00000380871 POLR3GLQ9BT43 218 aa22.55■■□□□ 1.2
NKX3-1-201ENST00000380871 RAPGEF6Q8TEU7 1601 aa22.53■■□□□ 1.2
NKX3-1-201ENST00000380871 EIF4G2P78344 907 aaKnown RBP eCLIP22.53■■□□□ 1.2
NKX3-1-201ENST00000380871 GCC2Q8IWJ2 1684 aa22.52■■□□□ 1.2
NKX3-1-201ENST00000380871 TROQ12816 1431 aaPredicted RBP22.51■■□□□ 1.19
NKX3-1-201ENST00000380871 HNRNPMP52272 730 aaKnown RBP eCLIP22.51■■□□□ 1.19
NKX3-1-201ENST00000380871 NBPF8Q3BBV2 869 aa22.46■■□□□ 1.19
NKX3-1-201ENST00000380871 FAM9BQ8IZU0 186 aa22.46■■□□□ 1.19
NKX3-1-201ENST00000380871 CNTLNQ9NXG0 1405 aa22.45■■□□□ 1.18
NKX3-1-201ENST00000380871 PKD2Q13563 968 aa22.45■■□□□ 1.18
NKX3-1-201ENST00000380871 MSH5O43196 834 aa22.44■■□□□ 1.18
NKX3-1-201ENST00000380871 TSPY4P0CV99 314 aa22.44■■□□□ 1.18
NKX3-1-201ENST00000380871 TSPY10P0CW01 314 aa22.44■■□□□ 1.18
NKX3-1-201ENST00000380871 PTPRGP23470 1445 aa22.44■■□□□ 1.18
NKX3-1-201ENST00000380871 NUP160Q12769 1436 aa22.43■■□□□ 1.18
NKX3-1-201ENST00000380871 GPATCH8Q9UKJ3 1502 aaKnown RBP22.42■■□□□ 1.18
NKX3-1-201ENST00000380871 CCDC7Q96M83 1385 aa22.41■■□□□ 1.18
NKX3-1-201ENST00000380871 CAMSAP2Q08AD1 1489 aa22.41■■□□□ 1.18
NKX3-1-201ENST00000380871 KIF14Q15058 1648 aa22.41■■□□□ 1.18
NKX3-1-201ENST00000380871 PRKRIP1Q9H875 184 aaPredicted RBP22.41■■□□□ 1.18
NKX3-1-201ENST00000380871 AKNAQ7Z591 1439 aa22.4■■□□□ 1.18
NKX3-1-201ENST00000380871 KDM2AQ9Y2K7 1162 aa22.4■■□□□ 1.18
NKX3-1-201ENST00000380871 NCOA1Q15788 1441 aa22.39■■□□□ 1.17
NKX3-1-201ENST00000380871 MRS2Q9HD23 443 aa22.38■■□□□ 1.17
NKX3-1-201ENST00000380871 ATP10BO94823 1461 aa22.38■■□□□ 1.17
NKX3-1-201ENST00000380871 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.38■■□□□ 1.17
NKX3-1-201ENST00000380871 ANKRD30BQ9BXX2 1392 aa22.37■■□□□ 1.17
NKX3-1-201ENST00000380871 ROCK1Q13464 1354 aa22.35■■□□□ 1.17
NKX3-1-201ENST00000380871 ANKRD30AQ9BXX3 1397 aa22.34■■□□□ 1.17
NKX3-1-201ENST00000380871 NUP155O75694 1391 aa22.34■■□□□ 1.17
NKX3-1-201ENST00000380871 KIF7Q2M1P5 1343 aa22.34■■□□□ 1.17
NKX3-1-201ENST00000380871 TEX14Q8IWB6 1497 aa22.33■■□□□ 1.17
NKX3-1-201ENST00000380871 RPRD2Q5VT52 1461 aaKnown RBP22.33■■□□□ 1.16
NKX3-1-201ENST00000380871 DNMT1P26358 1616 aaKnown RBP22.31■■□□□ 1.16
NKX3-1-201ENST00000380871 SENP3-EIF4A1A0A087X0R7 540 aa22.3■■□□□ 1.16
NKX3-1-201ENST00000380871 B4GALNT3Q6L9W6 998 aa22.29■■□□□ 1.16
NKX3-1-201ENST00000380871 ANKRD50Q9ULJ7 1429 aa22.28■■□□□ 1.16
NKX3-1-201ENST00000380871 SPATA31E1Q6ZUB1 1445 aa22.27■■□□□ 1.15
NKX3-1-201ENST00000380871 RGL3Q3MIN7 710 aa22.25■■□□□ 1.15
NKX3-1-201ENST00000380871 PPP4R2Q9NY27 417 aa22.25■■□□□ 1.15
NKX3-1-201ENST00000380871 ZBED9Q6R2W3 1325 aa22.24■■□□□ 1.15
NKX3-1-201ENST00000380871 C9orf84Q5VXU9 1444 aa22.23■■□□□ 1.15
NKX3-1-201ENST00000380871 PZPP20742 1482 aa22.22■■□□□ 1.15
NKX3-1-201ENST00000380871 KIF15Q9NS87 1388 aa22.21■■□□□ 1.15
NKX3-1-201ENST00000380871 DCAF11Q8TEB1 546 aa22.2■■□□□ 1.14
NKX3-1-201ENST00000380871 ABCA8O94911 1581 aa22.2■■□□□ 1.14
NKX3-1-201ENST00000380871 FANCIQ9NVI1 1328 aa22.2■■□□□ 1.14
NKX3-1-201ENST00000380871 MYT1LQ9UL68 1186 aa22.19■■□□□ 1.14
NKX3-1-201ENST00000380871 KIAA1107Q9UPP5 1409 aa22.16■■□□□ 1.14
NKX3-1-201ENST00000380871 ABCC10Q5T3U5 1492 aa22.15■■□□□ 1.14
NKX3-1-201ENST00000380871 ERCC6L2Q5T890 1561 aa22.15■■□□□ 1.14
NKX3-1-201ENST00000380871 BCL11AQ9H165 835 aa22.15■■□□□ 1.14
NKX3-1-201ENST00000380871 ITSN2Q9NZM3 1697 aa22.15■■□□□ 1.14
NKX3-1-201ENST00000380871 CARD11Q9BXL7 1154 aa22.14■■□□□ 1.13
NKX3-1-201ENST00000380871 DHX29Q7Z478 1369 aaKnown RBP22.14■■□□□ 1.13
NKX3-1-201ENST00000380871 ERICH6BQ5W0A0 696 aa22.14■■□□□ 1.13
NKX3-1-201ENST00000380871 USP47Q96K76 1375 aa22.13■■□□□ 1.13
NKX3-1-201ENST00000380871 BCORL1Q5H9F3 1711 aa22.13■■□□□ 1.13
NKX3-1-201ENST00000380871 POLR1AO95602 1720 aaPredicted RBP22.11■■□□□ 1.13
NKX3-1-201ENST00000380871 CHD1O14646 1710 aa22.1■■□□□ 1.13
NKX3-1-201ENST00000380871 MBD5Q9P267 1494 aa22.09■■□□□ 1.13
NKX3-1-201ENST00000380871 ERICH6Q7L0X2 663 aa22.09■■□□□ 1.13
NKX3-1-201ENST00000380871 CDC42BPAQ5VT25 1732 aa22.08■■□□□ 1.13
NKX3-1-201ENST00000380871 ARHGAP5Q13017 1502 aa22.07■■□□□ 1.12
NKX3-1-201ENST00000380871 ADGRL2O95490 1459 aa22.06■■□□□ 1.12
NKX3-1-201ENST00000380871 ST20-MTHFSA0A0A6YYL1 179 aa22.04■■□□□ 1.12
NKX3-1-201ENST00000380871 ADCY10Q96PN6 1610 aa22.04■■□□□ 1.12
NKX3-1-201ENST00000380871 AFAP1Q8N556 730 aa22.02■■□□□ 1.12
NKX3-1-201ENST00000380871 SMG6Q86US8 1419 aaKnown RBP22.01■■□□□ 1.11
NKX3-1-201ENST00000380871 EFCAB2Q5VUJ9 269 aa22■■□□□ 1.11
NKX3-1-201ENST00000380871 CCDC141Q6ZP82 1450 aa22■■□□□ 1.11
NKX3-1-201ENST00000380871 NUDCQ9Y266 331 aa22■■□□□ 1.11
NKX3-1-201ENST00000380871 KDM5CP41229 1560 aa21.99■■□□□ 1.11
NKX3-1-201ENST00000380871 ADGBQ8N7X0 1667 aa21.99■■□□□ 1.11
NKX3-1-201ENST00000380871 SYCP2Q9BX26 1530 aa21.99■■□□□ 1.11
NKX3-1-201ENST00000380871 RSPH4AQ5TD94 716 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms