RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 NISCHQ9Y2I1 1504 aa33.45■■■□□ 2.95
NKX3-1-201ENST00000380871 SHROOM4Q9ULL8 1493 aa29.01■■■□□ 2.23
NKX3-1-201ENST00000380871 DCAF8L2P0C7V8 631 aa28.77■■■□□ 2.2
NKX3-1-201ENST00000380871 SUPT5HO00267 1087 aaKnown RBP28.35■■■□□ 2.13
NKX3-1-201ENST00000380871 CCDC180Q9P1Z9 1646 aa28.26■■■□□ 2.11
NKX3-1-201ENST00000380871 ZCCHC6Q5VYS8 1495 aaKnown RBP28.15■■■□□ 2.1
NKX3-1-201ENST00000380871 MYO15BQ96JP2 1530 aa27.39■■□□□ 1.98
NKX3-1-201ENST00000380871 CHIC1Q5VXU3 224 aa27.31■■□□□ 1.96
NKX3-1-201ENST00000380871 ABCC9O60706 1549 aa27.16■■□□□ 1.94
NKX3-1-201ENST00000380871 DCAF1Q9Y4B6 1507 aa27.13■■□□□ 1.93
NKX3-1-201ENST00000380871 SCRIBQ14160 1630 aa26.94■■□□□ 1.9
NKX3-1-201ENST00000380871 HRCP23327 699 aa26.93■■□□□ 1.9
NKX3-1-201ENST00000380871 PCGF6Q9BYE7 350 aa26.87■■□□□ 1.89
NKX3-1-201ENST00000380871 LOC105371045A0A1W2PR82 267 aa26.68■■□□□ 1.86
NKX3-1-201ENST00000380871 PPARGC1BQ86YN6 1023 aaKnown RBP26.58■■□□□ 1.85
NKX3-1-201ENST00000380871 RSF1Q96T23 1441 aaPredicted RBP26.48■■□□□ 1.83
NKX3-1-201ENST00000380871 NACADO15069 1562 aa26.38■■□□□ 1.81
NKX3-1-201ENST00000380871 EHMT2Q96KQ7 1210 aa26.36■■□□□ 1.81
NKX3-1-201ENST00000380871 CECR2Q9BXF3 1484 aa26.35■■□□□ 1.81
NKX3-1-201ENST00000380871 FAM9AQ8IZU1 332 aaPredicted RBP26.33■■□□□ 1.81
NKX3-1-201ENST00000380871 TRIM41Q8WV44 630 aa26.25■■□□□ 1.79
NKX3-1-201ENST00000380871 PABPN1Q86U42 306 aaKnown RBP eCLIP26.15■■□□□ 1.78
NKX3-1-201ENST00000380871 RB1CC1Q8TDY2 1594 aa26.13■■□□□ 1.77
NKX3-1-201ENST00000380871 MROH2BQ7Z745 1585 aa26.12■■□□□ 1.77
NKX3-1-201ENST00000380871 TRIM26Q12899 539 aaPredicted RBP26.1■■□□□ 1.77
NKX3-1-201ENST00000380871 WIZO95785 1651 aa25.93■■□□□ 1.74
NKX3-1-201ENST00000380871 BAZ1AQ9NRL2 1556 aaPredicted RBP25.69■■□□□ 1.7
NKX3-1-201ENST00000380871 UNC13AQ9UPW8 1703 aa25.55■■□□□ 1.68
NKX3-1-201ENST00000380871 ZEB1P37275 1124 aaPredicted RBP25.5■■□□□ 1.67
NKX3-1-201ENST00000380871 SMARCA4P51532 1647 aa25.49■■□□□ 1.67
NKX3-1-201ENST00000380871 CCDC88BA6NC98 1476 aa25.46■■□□□ 1.67
NKX3-1-201ENST00000380871 ABCC8Q09428 1581 aa25.39■■□□□ 1.65
NKX3-1-201ENST00000380871 TOP2AP11388 1531 aaKnown RBP25.37■■□□□ 1.65
NKX3-1-201ENST00000380871 BICRAQ9NZM4 1560 aa25.37■■□□□ 1.65
NKX3-1-201ENST00000380871 TTBK1Q5TCY1 1321 aaPredicted RBP25.37■■□□□ 1.65
NKX3-1-201ENST00000380871 SMARCA2P51531 1590 aa25.27■■□□□ 1.64
NKX3-1-201ENST00000380871 EIF4G1Q04637 1599 aaKnown RBP25.22■■□□□ 1.63
NKX3-1-201ENST00000380871 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.21■■□□□ 1.63
NKX3-1-201ENST00000380871 UBTFP17480 764 aaKnown RBP25.17■■□□□ 1.62
NKX3-1-201ENST00000380871 SOGA1O94964 1423 aa25.15■■□□□ 1.62
NKX3-1-201ENST00000380871 SCAF1Q9H7N4 1312 aaKnown RBP25.1■■□□□ 1.61
NKX3-1-201ENST00000380871 RANGAP1P46060 587 aaPredicted RBP25.08■■□□□ 1.61
NKX3-1-201ENST00000380871 CCER1Q8TC90 406 aaPredicted RBP25.06■■□□□ 1.6
NKX3-1-201ENST00000380871 RUSC2Q8N2Y8 1516 aa25.05■■□□□ 1.6
NKX3-1-201ENST00000380871 ATAD2BQ9ULI0 1458 aa25.04■■□□□ 1.6
NKX3-1-201ENST00000380871 CSRNP3Q8WYN3 585 aa25.04■■□□□ 1.6
NKX3-1-201ENST00000380871 BAZ1BQ9UIG0 1483 aaKnown RBP25.03■■□□□ 1.6
NKX3-1-201ENST00000380871 WRNQ14191 1432 aaPredicted RBP eCLIP24.95■■□□□ 1.58
NKX3-1-201ENST00000380871 CEP162Q5TB80 1403 aa24.9■■□□□ 1.58
NKX3-1-201ENST00000380871 PEG3Q9GZU2 1588 aa24.79■■□□□ 1.56
NKX3-1-201ENST00000380871 TNIKQ9UKE5 1360 aa24.74■■□□□ 1.55
NKX3-1-201ENST00000380871 SYNJ1O43426 1573 aa24.71■■□□□ 1.55
NKX3-1-201ENST00000380871 NEUROD1Q13562 356 aa24.71■■□□□ 1.55
NKX3-1-201ENST00000380871 DIEXFQ68CQ4 756 aaKnown RBP24.7■■□□□ 1.54
NKX3-1-201ENST00000380871 ACIN1Q9UKV3 1341 aaKnown RBP24.65■■□□□ 1.54
NKX3-1-201ENST00000380871 EEA1Q15075 1411 aa24.64■■□□□ 1.54
NKX3-1-201ENST00000380871 GOLGA3Q08378 1498 aa24.61■■□□□ 1.53
NKX3-1-201ENST00000380871 PELP1Q8IZL8 1130 aaKnown RBP24.54■■□□□ 1.52
NKX3-1-201ENST00000380871 NCAPD3P42695 1498 aa24.52■■□□□ 1.52
NKX3-1-201ENST00000380871 APLP2Q06481 763 aa24.5■■□□□ 1.51
NKX3-1-201ENST00000380871 HNRNPUL2Q1KMD3 747 aaKnown RBP24.49■■□□□ 1.51
NKX3-1-201ENST00000380871 CEP164Q9UPV0 1460 aa24.48■■□□□ 1.51
NKX3-1-201ENST00000380871 RAPGEF2Q9Y4G8 1499 aa24.48■■□□□ 1.51
NKX3-1-201ENST00000380871 GTF3C3Q9Y5Q9 886 aa24.46■■□□□ 1.51
NKX3-1-201ENST00000380871 CLIP1P30622 1438 aa24.46■■□□□ 1.51
NKX3-1-201ENST00000380871 ZNF316A6NFI3 1004 aaPredicted RBP24.38■■□□□ 1.49
NKX3-1-201ENST00000380871 CENPBP07199 599 aaPredicted RBP24.38■■□□□ 1.49
NKX3-1-201ENST00000380871 HMGXB3Q12766 1538 aa24.34■■□□□ 1.49
NKX3-1-201ENST00000380871 YTHDC1Q96MU7 727 aaKnown RBP24.31■■□□□ 1.48
NKX3-1-201ENST00000380871 TOP2BQ02880 1626 aa24.31■■□□□ 1.48
NKX3-1-201ENST00000380871 KIF21BO75037 1637 aa24.3■■□□□ 1.48
NKX3-1-201ENST00000380871 CUX1P39880 1505 aa24.29■■□□□ 1.48
NKX3-1-201ENST00000380871 CFTRP13569 1480 aa24.26■■□□□ 1.47
NKX3-1-201ENST00000380871 VPS8Q8N3P4 1428 aa24.24■■□□□ 1.47
NKX3-1-201ENST00000380871 KIF27Q86VH2 1401 aa24.21■■□□□ 1.47
NKX3-1-201ENST00000380871 MIER1Q8N108 512 aa24.2■■□□□ 1.46
NKX3-1-201ENST00000380871 CADPSQ9ULU8 1353 aa24.2■■□□□ 1.46
NKX3-1-201ENST00000380871 CC2D2AQ9P2K1 1620 aa24.15■■□□□ 1.46
NKX3-1-201ENST00000380871 ATP1B4Q9UN42 357 aaPredicted RBP24.14■■□□□ 1.45
NKX3-1-201ENST00000380871 P3H3Q8IVL6 736 aa24.13■■□□□ 1.45
NKX3-1-201ENST00000380871 CUX2O14529 1486 aa24.13■■□□□ 1.45
NKX3-1-201ENST00000380871 DNAJC5BQ9UF47 199 aa24.12■■□□□ 1.45
NKX3-1-201ENST00000380871 BIVM-ERCC5R4GMW8 1640 aa24.12■■□□□ 1.45
NKX3-1-201ENST00000380871 KANK4Q5T7N3 995 aaPredicted RBP24.1■■□□□ 1.45
NKX3-1-201ENST00000380871 ITGAEP38570 1179 aa24.09■■□□□ 1.45
NKX3-1-201ENST00000380871 PRXQ9BXM0 1461 aa24.08■■□□□ 1.45
NKX3-1-201ENST00000380871 NESP48681 1621 aa24.04■■□□□ 1.44
NKX3-1-201ENST00000380871 FGD5Q6ZNL6 1462 aa23.99■■□□□ 1.43
NKX3-1-201ENST00000380871 IGF1RP08069 1367 aa23.99■■□□□ 1.43
NKX3-1-201ENST00000380871 FANCD2Q9BXW9 1451 aa23.97■■□□□ 1.43
NKX3-1-201ENST00000380871 ARAP1Q96P48 1450 aa23.96■■□□□ 1.43
NKX3-1-201ENST00000380871 CARMIL1Q5VZK9 1371 aa23.96■■□□□ 1.43
NKX3-1-201ENST00000380871 RAD54L2Q9Y4B4 1467 aa23.92■■□□□ 1.42
NKX3-1-201ENST00000380871 ERICH3Q5RHP9 1530 aa23.91■■□□□ 1.42
NKX3-1-201ENST00000380871 DHX57Q6P158 1386 aaKnown RBP23.89■■□□□ 1.42
NKX3-1-201ENST00000380871 ARHGAP35Q9NRY4 1499 aa23.83■■□□□ 1.4
NKX3-1-201ENST00000380871 TDRD9Q8NDG6 1382 aaKnown RBP23.78■■□□□ 1.4
NKX3-1-201ENST00000380871 FAM50AQ14320 339 aaKnown RBP23.73■■□□□ 1.39
NKX3-1-201ENST00000380871 TOPBP1Q92547 1522 aa23.71■■□□□ 1.39
NKX3-1-201ENST00000380871 POLA1P09884 1462 aaPredicted RBP23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms