RNA–Protein interactions for RNA: ENST00000375360.7

PTPDC1-202, Transcript of protein tyrosine phosphatase domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPDC1, Length 4,517 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPDC1-202ENST00000375360 OSCARQ8IYS5 282 aa23.78■■□□□ 1.4
PTPDC1-202ENST00000375360 A0A0G2JS52 829 aa23.77■■□□□ 1.4
PTPDC1-202ENST00000375360 SRPK2P78362 688 aaKnown RBP23.76■■□□□ 1.39
PTPDC1-202ENST00000375360 RSPH4AQ5TD94 716 aa23.75■■□□□ 1.39
PTPDC1-202ENST00000375360 KIF21BO75037 1637 aa23.74■■□□□ 1.39
PTPDC1-202ENST00000375360 SOX12O15370 315 aa23.74■■□□□ 1.39
PTPDC1-202ENST00000375360 PHLDB1Q86UU1 1377 aa23.73■■□□□ 1.39
PTPDC1-202ENST00000375360 U2SURPO15042 1029 aaKnown RBP23.71■■□□□ 1.39
PTPDC1-202ENST00000375360 ARAP1Q96P48 1450 aa23.71■■□□□ 1.39
PTPDC1-202ENST00000375360 WASHC2CQ9Y4E1 1318 aa23.7■■□□□ 1.38
PTPDC1-202ENST00000375360 ROCK2O75116 1388 aaKnown RBP23.7■■□□□ 1.38
PTPDC1-202ENST00000375360 CUX1P39880 1505 aa23.69■■□□□ 1.38
PTPDC1-202ENST00000375360 LAS1LQ9Y4W2 734 aaKnown RBP23.68■■□□□ 1.38
PTPDC1-202ENST00000375360 POLA1P09884 1462 aaPredicted RBP23.65■■□□□ 1.38
PTPDC1-202ENST00000375360 TOPBP1Q92547 1522 aa23.65■■□□□ 1.38
PTPDC1-202ENST00000375360 HMGXB3Q12766 1538 aa23.64■■□□□ 1.38
PTPDC1-202ENST00000375360 NUDCQ9Y266 331 aa23.62■■□□□ 1.37
PTPDC1-202ENST00000375360 GRIN2BQ13224 1484 aa23.61■■□□□ 1.37
PTPDC1-202ENST00000375360 HAP1P54257 671 aaPredicted RBP23.61■■□□□ 1.37
PTPDC1-202ENST00000375360 PRXQ9BXM0 1461 aa23.61■■□□□ 1.37
PTPDC1-202ENST00000375360 MAPK8IP3Q9UPT6 1336 aa23.61■■□□□ 1.37
PTPDC1-202ENST00000375360 MORC1Q86VD1 984 aa23.6■■□□□ 1.37
PTPDC1-202ENST00000375360 UPF2Q9HAU5 1272 aaKnown RBP23.59■■□□□ 1.37
PTPDC1-202ENST00000375360 ST20-MTHFSA0A0A6YYL1 179 aa23.59■■□□□ 1.37
PTPDC1-202ENST00000375360 CCER2I3L3R5 266 aa23.58■■□□□ 1.37
PTPDC1-202ENST00000375360 FGD6Q6ZV73 1430 aa23.58■■□□□ 1.37
PTPDC1-202ENST00000375360 HDGFP51858 240 aaKnown RBP23.58■■□□□ 1.36
PTPDC1-202ENST00000375360 FRAT1Q92837 279 aaPredicted RBP23.58■■□□□ 1.36
PTPDC1-202ENST00000375360 HSP90AA1P07900 732 aaKnown RBP23.56■■□□□ 1.36
PTPDC1-202ENST00000375360 LRRC9Q6ZRR7 1453 aa23.56■■□□□ 1.36
PTPDC1-202ENST00000375360 TOP2BQ02880 1626 aa23.55■■□□□ 1.36
PTPDC1-202ENST00000375360 TRAK1Q9UPV9 953 aa23.54■■□□□ 1.36
PTPDC1-202ENST00000375360 MYOM3Q5VTT5 1437 aa23.53■■□□□ 1.36
PTPDC1-202ENST00000375360 B4GALNT3Q6L9W6 998 aa23.52■■□□□ 1.36
PTPDC1-202ENST00000375360 AFAP1Q8N556 730 aa23.51■■□□□ 1.35
PTPDC1-202ENST00000375360 MRC2Q9UBG0 1479 aa23.51■■□□□ 1.35
PTPDC1-202ENST00000375360 CASKIN1Q8WXD9 1431 aa23.5■■□□□ 1.35
PTPDC1-202ENST00000375360 NUTM2FA1L443 756 aa23.49■■□□□ 1.35
PTPDC1-202ENST00000375360 CCDC144AA2RUR9 1427 aa23.48■■□□□ 1.35
PTPDC1-202ENST00000375360 ERICH3Q5RHP9 1530 aa23.48■■□□□ 1.35
PTPDC1-202ENST00000375360 KTN1Q86UP2 1357 aaKnown RBP23.47■■□□□ 1.35
PTPDC1-202ENST00000375360 FTSJ3Q8IY81 847 aaKnown RBP23.46■■□□□ 1.35
PTPDC1-202ENST00000375360 MYH16Q9H6N6 1097 aa23.46■■□□□ 1.35
PTPDC1-202ENST00000375360 NCOA2Q15596 1464 aa23.46■■□□□ 1.35
PTPDC1-202ENST00000375360 PRG4Q92954 1404 aaPredicted RBP23.45■■□□□ 1.35
PTPDC1-202ENST00000375360 FAM69CQ0P6D2 419 aa23.45■■□□□ 1.34
PTPDC1-202ENST00000375360 ARXQ96QS3 562 aa23.44■■□□□ 1.34
PTPDC1-202ENST00000375360 PRDM2Q13029 1718 aa23.43■■□□□ 1.34
PTPDC1-202ENST00000375360 KIF15Q9NS87 1388 aa23.42■■□□□ 1.34
PTPDC1-202ENST00000375360 U2AF1L5P0DN76 240 aaPredicted RBP23.41■■□□□ 1.34
PTPDC1-202ENST00000375360 U2AF1Q01081 240 aaKnown RBP eCLIP23.41■■□□□ 1.34
PTPDC1-202ENST00000375360 NBR1Q14596 966 aa23.41■■□□□ 1.34
PTPDC1-202ENST00000375360 HDGFL2Q7Z4V5 671 aaPredicted RBP23.4■■□□□ 1.34
PTPDC1-202ENST00000375360 RGS3P49796 1198 aa23.4■■□□□ 1.34
PTPDC1-202ENST00000375360 PPP4R2Q9NY27 417 aa23.4■■□□□ 1.34
PTPDC1-202ENST00000375360 IFT140Q96RY7 1462 aa23.39■■□□□ 1.34
PTPDC1-202ENST00000375360 PAK3O75914 559 aaPredicted RBP23.39■■□□□ 1.33
PTPDC1-202ENST00000375360 SNAPC4Q5SXM2 1469 aa23.38■■□□□ 1.33
PTPDC1-202ENST00000375360 RALBP1Q15311 655 aa23.36■■□□□ 1.33
PTPDC1-202ENST00000375360 PANK3Q9H999 370 aa23.36■■□□□ 1.33
PTPDC1-202ENST00000375360 ANKRD50Q9ULJ7 1429 aa23.33■■□□□ 1.33
PTPDC1-202ENST00000375360 DNMBPQ6XZF7 1577 aa23.33■■□□□ 1.33
PTPDC1-202ENST00000375360 USP47Q96K76 1375 aa23.31■■□□□ 1.32
PTPDC1-202ENST00000375360 CCDC146Q8IYE0 955 aa23.31■■□□□ 1.32
PTPDC1-202ENST00000375360 FYCO1Q9BQS8 1478 aa23.3■■□□□ 1.32
PTPDC1-202ENST00000375360 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.3■■□□□ 1.323e-6■■■□□ 15
PTPDC1-202ENST00000375360 NLRP13Q86W25 1043 aa23.29■■□□□ 1.32
PTPDC1-202ENST00000375360 UACAQ9BZF9 1416 aa23.29■■□□□ 1.32
PTPDC1-202ENST00000375360 EID1Q9Y6B2 187 aa23.28■■□□□ 1.32
PTPDC1-202ENST00000375360 PRKRIP1Q9H875 184 aaPredicted RBP23.28■■□□□ 1.32
PTPDC1-202ENST00000375360 EIF3AQ14152 1382 aaKnown RBP23.27■■□□□ 1.32
PTPDC1-202ENST00000375360 VGFO15240 615 aaPredicted RBP23.26■■□□□ 1.31
PTPDC1-202ENST00000375360 RRBP1Q9P2E9 1410 aaKnown RBP23.26■■□□□ 1.31
PTPDC1-202ENST00000375360 ABCA10Q8WWZ4 1543 aa23.26■■□□□ 1.31
PTPDC1-202ENST00000375360 UNC13AQ9UPW8 1703 aa23.25■■□□□ 1.31
PTPDC1-202ENST00000375360 TERF2IPQ9NYB0 399 aa23.25■■□□□ 1.31
PTPDC1-202ENST00000375360 PNNQ9H307 717 aaKnown RBP23.25■■□□□ 1.31
PTPDC1-202ENST00000375360 MINK1Q8N4C8 1332 aaPredicted RBP23.23■■□□□ 1.31
PTPDC1-202ENST00000375360 SYNJ2O15056 1496 aa23.23■■□□□ 1.31
PTPDC1-202ENST00000375360 RCAN3Q9UKA8 241 aa23.22■■□□□ 1.31
PTPDC1-202ENST00000375360 NGDNQ8NEJ9 315 aaKnown RBP23.21■■□□□ 1.31
PTPDC1-202ENST00000375360 TMEM132EQ6IEE7 984 aa23.18■■□□□ 1.3
PTPDC1-202ENST00000375360 PEG3Q9GZU2 1588 aa23.17■■□□□ 1.3
PTPDC1-202ENST00000375360 RRP7AQ9Y3A4 280 aaKnown RBP23.17■■□□□ 1.3
PTPDC1-202ENST00000375360 ARHGAP5Q13017 1502 aa23.16■■□□□ 1.3
PTPDC1-202ENST00000375360 URB2Q14146 1524 aaKnown RBP23.16■■□□□ 1.3
PTPDC1-202ENST00000375360 LAMC3Q9Y6N6 1575 aa23.16■■□□□ 1.3
PTPDC1-202ENST00000375360 EFCAB5A4FU69 1503 aa23.16■■□□□ 1.3
PTPDC1-202ENST00000375360 TROQ12816 1431 aaPredicted RBP23.16■■□□□ 1.3
PTPDC1-202ENST00000375360 RAPGEF3O95398 923 aa23.15■■□□□ 1.3
PTPDC1-202ENST00000375360 RTF1Q92541 710 aaKnown RBP23.15■■□□□ 1.3
PTPDC1-202ENST00000375360 CDK13Q14004 1512 aaKnown RBP23.15■■□□□ 1.3
PTPDC1-202ENST00000375360 KIAA0586Q9BVV6 1533 aa23.15■■□□□ 1.3
PTPDC1-202ENST00000375360 ZNF608Q9ULD9 1512 aaPredicted RBP23.14■■□□□ 1.3
PTPDC1-202ENST00000375360 KIF7Q2M1P5 1343 aa23.13■■□□□ 1.29
PTPDC1-202ENST00000375360 LTV1Q96GA3 475 aaPredicted RBP23.13■■□□□ 1.29
PTPDC1-202ENST00000375360 NBPF1Q3BBV0 1214 aa23.12■■□□□ 1.29
PTPDC1-202ENST00000375360 CFAP70Q5T0N1 1121 aa23.11■■□□□ 1.29
PTPDC1-202ENST00000375360 MYBBP1AQ9BQG0 1328 aaKnown RBP23.11■■□□□ 1.29
PTPDC1-202ENST00000375360 TIAM1Q13009 1591 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms