RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 KDM6BO15054 1643 aa23.25■■□□□ 1.31
CCDC40-202ENST00000374876 NCOA2Q15596 1464 aa23.25■■□□□ 1.31
CCDC40-202ENST00000374876 GPATCH8Q9UKJ3 1502 aaKnown RBP23.24■■□□□ 1.31
CCDC40-202ENST00000374876 ARHGAP5Q13017 1502 aa23.24■■□□□ 1.31
CCDC40-202ENST00000374876 NEO1Q92859 1461 aa23.23■■□□□ 1.31
CCDC40-202ENST00000374876 ZNF777Q9ULD5 760 aaPredicted RBP23.23■■□□□ 1.31
CCDC40-202ENST00000374876 AKNAQ7Z591 1439 aa23.23■■□□□ 1.31
CCDC40-202ENST00000374876 SUPT6HQ7KZ85 1726 aaKnown RBP23.23■■□□□ 1.31
CCDC40-202ENST00000374876 CDC42BPBQ9Y5S2 1711 aa23.23■■□□□ 1.31
CCDC40-202ENST00000374876 CDC42BPAQ5VT25 1732 aa23.23■■□□□ 1.31
CCDC40-202ENST00000374876 CFDP1Q9UEE9 299 aaPredicted RBP23.21■■□□□ 1.31
CCDC40-202ENST00000374876 RAPGEF3O95398 923 aa23.21■■□□□ 1.31
CCDC40-202ENST00000374876 PREX2Q70Z35 1606 aa23.2■■□□□ 1.3
CCDC40-202ENST00000374876 PHLDB1Q86UU1 1377 aa23.2■■□□□ 1.3
CCDC40-202ENST00000374876 ARAP3Q8WWN8 1544 aa23.19■■□□□ 1.3
CCDC40-202ENST00000374876 CFAP74Q9C0B2 1584 aa23.16■■□□□ 1.3
CCDC40-202ENST00000374876 SCAPERQ9BY12 1400 aa23.15■■□□□ 1.3
CCDC40-202ENST00000374876 ADGRL1O94910 1474 aa23.15■■□□□ 1.3
CCDC40-202ENST00000374876 ZNF644Q9H582 1327 aaPredicted RBP23.14■■□□□ 1.3
CCDC40-202ENST00000374876 DENND4BO75064 1496 aaPredicted RBP23.11■■□□□ 1.29
CCDC40-202ENST00000374876 HNRNPMP52272 730 aaKnown RBP eCLIP23.1■■□□□ 1.29
CCDC40-202ENST00000374876 AFAP1Q8N556 730 aa23.09■■□□□ 1.29
CCDC40-202ENST00000374876 ITSN2Q9NZM3 1697 aa23.09■■□□□ 1.29
CCDC40-202ENST00000374876 SAMD9LQ8IVG5 1584 aa23.09■■□□□ 1.29
CCDC40-202ENST00000374876 ARHGEF12Q9NZN5 1544 aa23.08■■□□□ 1.29
CCDC40-202ENST00000374876 MYOM3Q5VTT5 1437 aa23.07■■□□□ 1.28
CCDC40-202ENST00000374876 FRMPD1Q5SYB0 1578 aa23.05■■□□□ 1.28
CCDC40-202ENST00000374876 ABCC1P33527 1531 aa23.05■■□□□ 1.28
CCDC40-202ENST00000374876 TRAPPC8Q9Y2L5 1435 aa23.04■■□□□ 1.28
CCDC40-202ENST00000374876 RICTORQ6R327 1708 aa23.04■■□□□ 1.28
CCDC40-202ENST00000374876 POGZQ7Z3K3 1410 aa23.04■■□□□ 1.28
CCDC40-202ENST00000374876 SYCP2Q9BX26 1530 aa23.03■■□□□ 1.28
CCDC40-202ENST00000374876 MYT1LQ9UL68 1186 aa23■■□□□ 1.27
CCDC40-202ENST00000374876 CAMSAP2Q08AD1 1489 aa23■■□□□ 1.27
CCDC40-202ENST00000374876 MIA2Q96PC5 1412 aa22.99■■□□□ 1.27
CCDC40-202ENST00000374876 KIAA1107Q9UPP5 1409 aa22.99■■□□□ 1.27
CCDC40-202ENST00000374876 ZNF518AQ6AHZ1 1483 aa22.98■■□□□ 1.27
CCDC40-202ENST00000374876 PLEKHH2Q8IVE3 1493 aa22.98■■□□□ 1.27
CCDC40-202ENST00000374876 RRBP1Q9P2E9 1410 aaKnown RBP22.97■■□□□ 1.27
CCDC40-202ENST00000374876 FGD6Q6ZV73 1430 aa22.97■■□□□ 1.27
CCDC40-202ENST00000374876 MBD5Q9P267 1494 aa22.96■■□□□ 1.27
CCDC40-202ENST00000374876 YEATS2Q9ULM3 1422 aa22.93■■□□□ 1.26
CCDC40-202ENST00000374876 PTPN23Q9H3S7 1636 aa22.93■■□□□ 1.26
CCDC40-202ENST00000374876 KDM5CP41229 1560 aa22.92■■□□□ 1.26
CCDC40-202ENST00000374876 ZMYM4Q5VZL5 1548 aa22.92■■□□□ 1.26
CCDC40-202ENST00000374876 FAM50AQ14320 339 aaKnown RBP22.92■■□□□ 1.26
CCDC40-202ENST00000374876 SPAG9O60271 1321 aaKnown RBP22.91■■□□□ 1.26
CCDC40-202ENST00000374876 DIEXFQ68CQ4 756 aaKnown RBP22.91■■□□□ 1.26
CCDC40-202ENST00000374876 RSPH4AQ5TD94 716 aa22.89■■□□□ 1.25
CCDC40-202ENST00000374876 MAGI2Q86UL8 1455 aa22.89■■□□□ 1.25
CCDC40-202ENST00000374876 ZFYVE16Q7Z3T8 1539 aa22.88■■□□□ 1.25
CCDC40-202ENST00000374876 MLH3Q9UHC1 1453 aa22.88■■□□□ 1.25
CCDC40-202ENST00000374876 HECW2Q9P2P5 1572 aa22.87■■□□□ 1.25
CCDC40-202ENST00000374876 TCOF1Q13428 1488 aaKnown RBP22.86■■□□□ 1.25
CCDC40-202ENST00000374876 CCDC141Q6ZP82 1450 aa22.86■■□□□ 1.25
CCDC40-202ENST00000374876 TSPY4P0CV99 314 aa22.86■■□□□ 1.25
CCDC40-202ENST00000374876 TSPY10P0CW01 314 aa22.86■■□□□ 1.25
CCDC40-202ENST00000374876 ZNF316A6NFI3 1004 aaPredicted RBP22.85■■□□□ 1.25
CCDC40-202ENST00000374876 KIDINS220Q9ULH0 1771 aa22.84■■□□□ 1.25
CCDC40-202ENST00000374876 ARHGEF40Q8TER5 1519 aa22.84■■□□□ 1.25
CCDC40-202ENST00000374876 ARHGEF5Q12774 1597 aa22.84■■□□□ 1.25
CCDC40-202ENST00000374876 ARID4BQ4LE39 1312 aaPredicted RBP22.82■■□□□ 1.24
CCDC40-202ENST00000374876 CLSPNQ9HAW4 1339 aa22.82■■□□□ 1.24
CCDC40-202ENST00000374876 ATP10AO60312 1499 aa22.82■■□□□ 1.24
CCDC40-202ENST00000374876 ABCC5O15440 1437 aa22.81■■□□□ 1.24
CCDC40-202ENST00000374876 ATP7AQ04656 1500 aa22.81■■□□□ 1.24
CCDC40-202ENST00000374876 ABCA6Q8N139 1617 aa22.8■■□□□ 1.24
CCDC40-202ENST00000374876 DIP2CQ9Y2E4 1556 aa22.79■■□□□ 1.24
CCDC40-202ENST00000374876 DHX57Q6P158 1386 aaKnown RBP22.79■■□□□ 1.24
CCDC40-202ENST00000374876 CHIC2Q9UKJ5 165 aa22.79■■□□□ 1.24
CCDC40-202ENST00000374876 INO80Q9ULG1 1556 aaPredicted RBP22.78■■□□□ 1.24
CCDC40-202ENST00000374876 DAPK1P53355 1430 aa22.78■■□□□ 1.24
CCDC40-202ENST00000374876 ITGAEP38570 1179 aa22.78■■□□□ 1.24
CCDC40-202ENST00000374876 RTEL1-TNFRSF6BF6WH68 1400 aa22.77■■□□□ 1.24
CCDC40-202ENST00000374876 SIGLEC1Q9BZZ2 1709 aa22.77■■□□□ 1.24
CCDC40-202ENST00000374876 C9orf84Q5VXU9 1444 aa22.76■■□□□ 1.23
CCDC40-202ENST00000374876 DNMT1P26358 1616 aaKnown RBP22.75■■□□□ 1.23
CCDC40-202ENST00000374876 MLECQ14165 292 aa22.75■■□□□ 1.23
CCDC40-202ENST00000374876 KDM4FA0A1W2PPD8 638 aa22.72■■□□□ 1.23
CCDC40-202ENST00000374876 RRP7BPQ9NSQ0 103 aa22.71■■□□□ 1.23
CCDC40-202ENST00000374876 PTPRKQ15262 1439 aa22.7■■□□□ 1.22
CCDC40-202ENST00000374876 CROCC2H7BZ55 1655 aa22.7■■□□□ 1.22
CCDC40-202ENST00000374876 MAST1Q9Y2H9 1570 aa22.7■■□□□ 1.22
CCDC40-202ENST00000374876 A2MP01023 1474 aa22.7■■□□□ 1.22
CCDC40-202ENST00000374876 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.69■■□□□ 1.22
CCDC40-202ENST00000374876 SHANK2Q9UPX8 1470 aa22.67■■□□□ 1.22
CCDC40-202ENST00000374876 DHX29Q7Z478 1369 aaKnown RBP22.67■■□□□ 1.22
CCDC40-202ENST00000374876 ADGBQ8N7X0 1667 aa22.66■■□□□ 1.22
CCDC40-202ENST00000374876 REREQ9P2R6 1566 aa22.66■■□□□ 1.22
CCDC40-202ENST00000374876 ANKRD30AQ9BXX3 1397 aa22.64■■□□□ 1.21
CCDC40-202ENST00000374876 NCOA1Q15788 1441 aa22.63■■□□□ 1.21
CCDC40-202ENST00000374876 KIF15Q9NS87 1388 aa22.63■■□□□ 1.21
CCDC40-202ENST00000374876 BCORL1Q5H9F3 1711 aa22.63■■□□□ 1.21
CCDC40-202ENST00000374876 KIF3BO15066 747 aa22.62■■□□□ 1.21
CCDC40-202ENST00000374876 GGT6Q6P531 493 aa22.62■■□□□ 1.21
CCDC40-202ENST00000374876 PLXNC1O60486 1568 aa22.62■■□□□ 1.21
CCDC40-202ENST00000374876 AGLP35573 1532 aa22.61■■□□□ 1.21
CCDC40-202ENST00000374876 RAB3GAP2Q9H2M9 1393 aa22.6■■□□□ 1.21
CCDC40-202ENST00000374876 ADGRL2O95490 1459 aa22.58■■□□□ 1.2
CCDC40-202ENST00000374876 ADAMTSL3P82987 1691 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 96.3 ms