RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 NISCHQ9Y2I1 1504 aa35.63■■■■□ 3.29
CCDC40-202ENST00000374876 CCDC180Q9P1Z9 1646 aa31.46■■■□□ 2.63
CCDC40-202ENST00000374876 ABCC9O60706 1549 aa30.74■■■□□ 2.51
CCDC40-202ENST00000374876 DCAF8L2P0C7V8 631 aa29.89■■■□□ 2.38
CCDC40-202ENST00000374876 ZCCHC6Q5VYS8 1495 aaKnown RBP29.7■■■□□ 2.35
CCDC40-202ENST00000374876 NACADO15069 1562 aa29.57■■■□□ 2.32
CCDC40-202ENST00000374876 RB1CC1Q8TDY2 1594 aa29.56■■■□□ 2.32
CCDC40-202ENST00000374876 MYO15BQ96JP2 1530 aa29.42■■■□□ 2.3
CCDC40-202ENST00000374876 DCAF1Q9Y4B6 1507 aa29.39■■■□□ 2.3
CCDC40-202ENST00000374876 UNC13AQ9UPW8 1703 aa28.93■■■□□ 2.22
CCDC40-202ENST00000374876 SCRIBQ14160 1630 aa28.87■■■□□ 2.21
CCDC40-202ENST00000374876 PABPN1Q86U42 306 aaKnown RBP eCLIP28.85■■■□□ 2.21
CCDC40-202ENST00000374876 BICRAQ9NZM4 1560 aa28.7■■■□□ 2.19
CCDC40-202ENST00000374876 SHROOM4Q9ULL8 1493 aa28.46■■■□□ 2.15
CCDC40-202ENST00000374876 DNAJC5BQ9UF47 199 aa28.09■■■□□ 2.09
CCDC40-202ENST00000374876 EIF4G1Q04637 1599 aaKnown RBP27.92■■■□□ 2.06
CCDC40-202ENST00000374876 CECR2Q9BXF3 1484 aa27.81■■■□□ 2.04
CCDC40-202ENST00000374876 CC2D2AQ9P2K1 1620 aa27.76■■■□□ 2.04
CCDC40-202ENST00000374876 SMARCA4P51532 1647 aa27.58■■■□□ 2.01
CCDC40-202ENST00000374876 BAZ1AQ9NRL2 1556 aaPredicted RBP27.56■■■□□ 2
CCDC40-202ENST00000374876 MROH2BQ7Z745 1585 aa27.51■■□□□ 1.99
CCDC40-202ENST00000374876 ATAD2BQ9ULI0 1458 aa27.4■■□□□ 1.98
CCDC40-202ENST00000374876 SMARCA2P51531 1590 aa27.32■■□□□ 1.96
CCDC40-202ENST00000374876 NCAPD3P42695 1498 aa27.32■■□□□ 1.96
CCDC40-202ENST00000374876 RSF1Q96T23 1441 aaPredicted RBP27.28■■□□□ 1.96
CCDC40-202ENST00000374876 PEG3Q9GZU2 1588 aa27.25■■□□□ 1.95
CCDC40-202ENST00000374876 WIZO95785 1651 aa27.23■■□□□ 1.95
CCDC40-202ENST00000374876 BAZ1BQ9UIG0 1483 aaKnown RBP27.18■■□□□ 1.94
CCDC40-202ENST00000374876 HMGXB3Q12766 1538 aa27.16■■□□□ 1.94
CCDC40-202ENST00000374876 SUPT5HO00267 1087 aaKnown RBP26.92■■□□□ 1.9
CCDC40-202ENST00000374876 TOP2AP11388 1531 aaKnown RBP26.88■■□□□ 1.89
CCDC40-202ENST00000374876 NESP48681 1621 aa26.69■■□□□ 1.86
CCDC40-202ENST00000374876 CCDC88BA6NC98 1476 aa26.64■■□□□ 1.85
CCDC40-202ENST00000374876 CADPSQ9ULU8 1353 aa26.57■■□□□ 1.84
CCDC40-202ENST00000374876 LAMC3Q9Y6N6 1575 aa26.52■■□□□ 1.84
CCDC40-202ENST00000374876 CFTRP13569 1480 aa26.44■■□□□ 1.82
CCDC40-202ENST00000374876 ERCC6Q03468 1493 aa26.44■■□□□ 1.82
CCDC40-202ENST00000374876 PDS5BQ9NTI5 1447 aa26.38■■□□□ 1.81
CCDC40-202ENST00000374876 KIF21AQ7Z4S6 1674 aa26.31■■□□□ 1.8
CCDC40-202ENST00000374876 FANCD2Q9BXW9 1451 aa26.26■■□□□ 1.79
CCDC40-202ENST00000374876 CEP164Q9UPV0 1460 aa26.18■■□□□ 1.78
CCDC40-202ENST00000374876 PRDM2Q13029 1718 aa26.18■■□□□ 1.78
CCDC40-202ENST00000374876 THOC2Q8NI27 1593 aaKnown RBP26.12■■□□□ 1.77
CCDC40-202ENST00000374876 MRC2Q9UBG0 1479 aa26.09■■□□□ 1.77
CCDC40-202ENST00000374876 CHIC1Q5VXU3 224 aa26.05■■□□□ 1.76
CCDC40-202ENST00000374876 URB2Q14146 1524 aaKnown RBP25.99■■□□□ 1.75
CCDC40-202ENST00000374876 CUX2O14529 1486 aa25.99■■□□□ 1.75
CCDC40-202ENST00000374876 WDR62O43379 1518 aa25.97■■□□□ 1.75
CCDC40-202ENST00000374876 TOPBP1Q92547 1522 aa25.86■■□□□ 1.73
CCDC40-202ENST00000374876 DNMBPQ6XZF7 1577 aa25.82■■□□□ 1.72
CCDC40-202ENST00000374876 ABCC8Q09428 1581 aa25.81■■□□□ 1.72
CCDC40-202ENST00000374876 CUX1P39880 1505 aa25.77■■□□□ 1.72
CCDC40-202ENST00000374876 WRNQ14191 1432 aaPredicted RBP eCLIP25.7■■□□□ 1.7
CCDC40-202ENST00000374876 POLA1P09884 1462 aaPredicted RBP25.67■■□□□ 1.7
CCDC40-202ENST00000374876 FGD5Q6ZNL6 1462 aa25.65■■□□□ 1.7
CCDC40-202ENST00000374876 SYNJ1O43426 1573 aa25.62■■□□□ 1.69
CCDC40-202ENST00000374876 RAD54L2Q9Y4B4 1467 aa25.62■■□□□ 1.69
CCDC40-202ENST00000374876 IFT140Q96RY7 1462 aa25.61■■□□□ 1.69
CCDC40-202ENST00000374876 SOGA1O94964 1423 aa25.6■■□□□ 1.69
CCDC40-202ENST00000374876 TOP2BQ02880 1626 aa25.58■■□□□ 1.68
CCDC40-202ENST00000374876 ZNF608Q9ULD9 1512 aaPredicted RBP25.56■■□□□ 1.68
CCDC40-202ENST00000374876 BIVM-ERCC5R4GMW8 1640 aa25.55■■□□□ 1.68
CCDC40-202ENST00000374876 TARBP1Q13395 1621 aaKnown RBP25.55■■□□□ 1.68
CCDC40-202ENST00000374876 TDRD9Q8NDG6 1382 aaKnown RBP25.47■■□□□ 1.67
CCDC40-202ENST00000374876 AQRO60306 1485 aaKnown RBP eCLIP25.47■■□□□ 1.67
CCDC40-202ENST00000374876 EIF4G3O43432 1585 aaKnown RBP25.4■■□□□ 1.66
CCDC40-202ENST00000374876 ABCA10Q8WWZ4 1543 aa25.37■■□□□ 1.65
CCDC40-202ENST00000374876 WDR97A6NE52 1622 aa25.35■■□□□ 1.65
CCDC40-202ENST00000374876 TRIM41Q8WV44 630 aa25.35■■□□□ 1.65
CCDC40-202ENST00000374876 GAPVD1Q14C86 1478 aa25.28■■□□□ 1.64
CCDC40-202ENST00000374876 ABCA5Q8WWZ7 1642 aa25.23■■□□□ 1.63
CCDC40-202ENST00000374876 GRIN2BQ13224 1484 aa25.22■■□□□ 1.63
CCDC40-202ENST00000374876 LOC105371045A0A1W2PR82 267 aa25.19■■□□□ 1.62
CCDC40-202ENST00000374876 FBLN2P98095 1184 aa25.19■■□□□ 1.62
CCDC40-202ENST00000374876 SNAPC4Q5SXM2 1469 aa25.18■■□□□ 1.62
CCDC40-202ENST00000374876 PBRM1Q86U86 1689 aa25.17■■□□□ 1.62
CCDC40-202ENST00000374876 KIF27Q86VH2 1401 aa25.13■■□□□ 1.61
CCDC40-202ENST00000374876 MAGI1Q96QZ7 1491 aaPredicted RBP25.1■■□□□ 1.61
CCDC40-202ENST00000374876 CHMP7Q8WUX9 453 aaPredicted RBP25.09■■□□□ 1.61
CCDC40-202ENST00000374876 OSCARQ8IYS5 282 aa25.08■■□□□ 1.61
CCDC40-202ENST00000374876 RUSC2Q8N2Y8 1516 aa25.08■■□□□ 1.61
CCDC40-202ENST00000374876 ERICH3Q5RHP9 1530 aa25.05■■□□□ 1.6
CCDC40-202ENST00000374876 CHD1O14646 1710 aa25.05■■□□□ 1.6
CCDC40-202ENST00000374876 IGF1RP08069 1367 aa25.05■■□□□ 1.6
CCDC40-202ENST00000374876 DNAJC5Q9H3Z4 198 aa25.03■■□□□ 1.6
CCDC40-202ENST00000374876 SYNJ2O15056 1496 aa25.02■■□□□ 1.6
CCDC40-202ENST00000374876 ADAMTS12P58397 1594 aa24.98■■□□□ 1.59
CCDC40-202ENST00000374876 FHAD1B1AJZ9 1412 aa24.97■■□□□ 1.59
CCDC40-202ENST00000374876 FAM9AQ8IZU1 332 aaPredicted RBP24.91■■□□□ 1.58
CCDC40-202ENST00000374876 GRIN2AQ12879 1464 aa24.9■■□□□ 1.58
CCDC40-202ENST00000374876 CARMIL1Q5VZK9 1371 aa24.89■■□□□ 1.58
CCDC40-202ENST00000374876 PCGF6Q9BYE7 350 aa24.88■■□□□ 1.57
CCDC40-202ENST00000374876 CUL7Q14999 1698 aa24.86■■□□□ 1.57
CCDC40-202ENST00000374876 CSRNP3Q8WYN3 585 aa24.82■■□□□ 1.56
CCDC40-202ENST00000374876 CEP170Q5SW79 1584 aa24.78■■□□□ 1.56
CCDC40-202ENST00000374876 NUP160Q12769 1436 aa24.77■■□□□ 1.56
CCDC40-202ENST00000374876 EEA1Q15075 1411 aa24.75■■□□□ 1.55
CCDC40-202ENST00000374876 CLASP1Q7Z460 1538 aa24.74■■□□□ 1.55
CCDC40-202ENST00000374876 RAPGEF2Q9Y4G8 1499 aa24.74■■□□□ 1.55
CCDC40-202ENST00000374876 HRCP23327 699 aa24.72■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms