RNA–Protein interactions for RNA: ENST00000373514.2

CDX4-201, Transcript of caudal type homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX4, Length 1,515 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4-201ENST00000373514 APLP2Q06481 763 aa29.09■■■□□ 2.25
CDX4-201ENST00000373514 NEO1Q92859 1461 aa29.05■■■□□ 2.24
CDX4-201ENST00000373514 GPATCH8Q9UKJ3 1502 aaKnown RBP29.04■■■□□ 2.24
CDX4-201ENST00000373514 COL17A1Q9UMD9 1497 aaPredicted RBP29.04■■■□□ 2.24
CDX4-201ENST00000373514 CCNB3Q8WWL7 1395 aa29.02■■■□□ 2.24
CDX4-201ENST00000373514 SAMD9LQ8IVG5 1584 aa29■■■□□ 2.23
CDX4-201ENST00000373514 FRMPD1Q5SYB0 1578 aa28.99■■■□□ 2.23
CDX4-201ENST00000373514 AKNAQ7Z591 1439 aa28.99■■■□□ 2.23
CDX4-201ENST00000373514 RICTORQ6R327 1708 aa28.98■■■□□ 2.23
CDX4-201ENST00000373514 ABCC1P33527 1531 aa28.95■■■□□ 2.23
CDX4-201ENST00000373514 ADGRL1O94910 1474 aa28.95■■■□□ 2.23
CDX4-201ENST00000373514 EFCAB2Q5VUJ9 269 aa28.9■■■□□ 2.22
CDX4-201ENST00000373514 PPARGC1BQ86YN6 1023 aaKnown RBP28.9■■■□□ 2.22
CDX4-201ENST00000373514 PHLDB1Q86UU1 1377 aa28.89■■■□□ 2.22
CDX4-201ENST00000373514 SYCP2Q9BX26 1530 aa28.89■■■□□ 2.22
CDX4-201ENST00000373514 ARHGEF12Q9NZN5 1544 aa28.88■■■□□ 2.21
CDX4-201ENST00000373514 MYOM3Q5VTT5 1437 aa28.88■■■□□ 2.21
CDX4-201ENST00000373514 SCAPERQ9BY12 1400 aa28.86■■■□□ 2.21
CDX4-201ENST00000373514 DENND4BO75064 1496 aaPredicted RBP28.86■■■□□ 2.21
CDX4-201ENST00000373514 CFDP1Q9UEE9 299 aaPredicted RBP28.85■■■□□ 2.21
CDX4-201ENST00000373514 ZNF777Q9ULD5 760 aaPredicted RBP28.85■■■□□ 2.21
CDX4-201ENST00000373514 CAMSAP2Q08AD1 1489 aa28.84■■■□□ 2.21
CDX4-201ENST00000373514 POGZQ7Z3K3 1410 aa28.84■■■□□ 2.21
CDX4-201ENST00000373514 RAPGEF3O95398 923 aa28.82■■■□□ 2.2
CDX4-201ENST00000373514 PTPN23Q9H3S7 1636 aa28.8■■■□□ 2.2
CDX4-201ENST00000373514 ZNF644Q9H582 1327 aaPredicted RBP28.8■■■□□ 2.2
CDX4-201ENST00000373514 ZMYM4Q5VZL5 1548 aa28.79■■■□□ 2.2
CDX4-201ENST00000373514 KDM5CP41229 1560 aa28.78■■■□□ 2.2
CDX4-201ENST00000373514 TRAPPC8Q9Y2L5 1435 aa28.77■■■□□ 2.2
CDX4-201ENST00000373514 ZNF518AQ6AHZ1 1483 aa28.76■■■□□ 2.19
CDX4-201ENST00000373514 PLEKHH2Q8IVE3 1493 aa28.76■■■□□ 2.19
CDX4-201ENST00000373514 FGD6Q6ZV73 1430 aa28.76■■■□□ 2.19
CDX4-201ENST00000373514 MIA2Q96PC5 1412 aa28.75■■■□□ 2.19
CDX4-201ENST00000373514 HECW2Q9P2P5 1572 aa28.74■■■□□ 2.19
CDX4-201ENST00000373514 KIAA1107Q9UPP5 1409 aa28.72■■■□□ 2.19
CDX4-201ENST00000373514 ARHGEF40Q8TER5 1519 aa28.72■■■□□ 2.19
CDX4-201ENST00000373514 MBD5Q9P267 1494 aa28.71■■■□□ 2.19
CDX4-201ENST00000373514 HNRNPMP52272 730 aaKnown RBP eCLIP28.7■■■□□ 2.19
CDX4-201ENST00000373514 CROCC2H7BZ55 1655 aa28.69■■■□□ 2.18
CDX4-201ENST00000373514 KIDINS220Q9ULH0 1771 aa28.69■■■□□ 2.18
CDX4-201ENST00000373514 ZFYVE16Q7Z3T8 1539 aa28.69■■■□□ 2.18
CDX4-201ENST00000373514 ARHGEF5Q12774 1597 aa28.68■■■□□ 2.18
CDX4-201ENST00000373514 AFAP1Q8N556 730 aa28.68■■■□□ 2.18
CDX4-201ENST00000373514 TCOF1Q13428 1488 aaKnown RBP28.68■■■□□ 2.18
CDX4-201ENST00000373514 INO80Q9ULG1 1556 aaPredicted RBP28.68■■■□□ 2.18
CDX4-201ENST00000373514 ABCA6Q8N139 1617 aa28.67■■■□□ 2.18
CDX4-201ENST00000373514 YEATS2Q9ULM3 1422 aa28.66■■■□□ 2.18
CDX4-201ENST00000373514 SIGLEC1Q9BZZ2 1709 aa28.65■■■□□ 2.18
CDX4-201ENST00000373514 CCDC141Q6ZP82 1450 aa28.64■■■□□ 2.18
CDX4-201ENST00000373514 DNMT1P26358 1616 aaKnown RBP28.63■■■□□ 2.17
CDX4-201ENST00000373514 DIP2CQ9Y2E4 1556 aa28.62■■■□□ 2.17
CDX4-201ENST00000373514 ATP7AQ04656 1500 aa28.62■■■□□ 2.17
CDX4-201ENST00000373514 MAGI2Q86UL8 1455 aa28.59■■■□□ 2.17
CDX4-201ENST00000373514 MLH3Q9UHC1 1453 aa28.59■■■□□ 2.17
CDX4-201ENST00000373514 ADGBQ8N7X0 1667 aa28.57■■■□□ 2.16
CDX4-201ENST00000373514 MAST1Q9Y2H9 1570 aa28.54■■■□□ 2.16
CDX4-201ENST00000373514 DAPK1P53355 1430 aa28.52■■■□□ 2.16
CDX4-201ENST00000373514 SPAG9O60271 1321 aaKnown RBP28.52■■■□□ 2.16
CDX4-201ENST00000373514 MYT1LQ9UL68 1186 aa28.52■■■□□ 2.16
CDX4-201ENST00000373514 FAM50AQ14320 339 aaKnown RBP28.51■■■□□ 2.15
CDX4-201ENST00000373514 ABCC5O15440 1437 aa28.5■■■□□ 2.15
CDX4-201ENST00000373514 RRBP1Q9P2E9 1410 aaKnown RBP28.5■■■□□ 2.15
CDX4-201ENST00000373514 SHANK2Q9UPX8 1470 aa28.47■■■□□ 2.15
CDX4-201ENST00000373514 C9orf84Q5VXU9 1444 aa28.47■■■□□ 2.15
CDX4-201ENST00000373514 ATP10AO60312 1499 aa28.47■■■□□ 2.15
CDX4-201ENST00000373514 PLXNC1O60486 1568 aa28.46■■■□□ 2.15
CDX4-201ENST00000373514 REREQ9P2R6 1566 aa28.46■■■□□ 2.15
CDX4-201ENST00000373514 RTEL1-TNFRSF6BF6WH68 1400 aa28.44■■■□□ 2.14
CDX4-201ENST00000373514 RSPH4AQ5TD94 716 aa28.42■■■□□ 2.14
CDX4-201ENST00000373514 BCORL1Q5H9F3 1711 aa28.41■■■□□ 2.14
CDX4-201ENST00000373514 PTPRKQ15262 1439 aa28.38■■■□□ 2.13
CDX4-201ENST00000373514 TSPY4P0CV99 314 aa28.38■■■□□ 2.13
CDX4-201ENST00000373514 TSPY10P0CW01 314 aa28.38■■■□□ 2.13
CDX4-201ENST00000373514 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.37■■■□□ 2.13
CDX4-201ENST00000373514 A2MP01023 1474 aa28.37■■■□□ 2.13
CDX4-201ENST00000373514 CHIC2Q9UKJ5 165 aa28.33■■■□□ 2.13
CDX4-201ENST00000373514 AGLP35573 1532 aa28.32■■■□□ 2.12
CDX4-201ENST00000373514 ADGRL2O95490 1459 aa28.32■■■□□ 2.12
CDX4-201ENST00000373514 ADAMTSL3P82987 1691 aa28.32■■■□□ 2.12
CDX4-201ENST00000373514 ITGAEP38570 1179 aa28.32■■■□□ 2.12
CDX4-201ENST00000373514 ARID4BQ4LE39 1312 aaPredicted RBP28.31■■■□□ 2.12
CDX4-201ENST00000373514 FER1L4A9Z1Z3 1794 aa28.3■■■□□ 2.12
CDX4-201ENST00000373514 MADDQ8WXG6 1647 aa28.3■■■□□ 2.12
CDX4-201ENST00000373514 DUOX2Q9NRD8 1548 aa28.27■■■□□ 2.12
CDX4-201ENST00000373514 EIF2AK4Q9P2K8 1649 aaKnown RBP28.27■■■□□ 2.12
CDX4-201ENST00000373514 KIF15Q9NS87 1388 aa28.26■■■□□ 2.11
CDX4-201ENST00000373514 RIMS1Q86UR5 1692 aaKnown RBP28.26■■■□□ 2.11
CDX4-201ENST00000373514 DHX29Q7Z478 1369 aaKnown RBP28.25■■■□□ 2.11
CDX4-201ENST00000373514 NCOA1Q15788 1441 aa28.25■■■□□ 2.11
CDX4-201ENST00000373514 ANKRD30AQ9BXX3 1397 aa28.24■■■□□ 2.11
CDX4-201ENST00000373514 MLECQ14165 292 aa28.23■■■□□ 2.11
CDX4-201ENST00000373514 RRP7BPQ9NSQ0 103 aa28.23■■■□□ 2.11
CDX4-201ENST00000373514 RNF17Q9BXT8 1623 aaKnown RBP28.21■■■□□ 2.11
CDX4-201ENST00000373514 GCC2Q8IWJ2 1684 aa28.21■■■□□ 2.11
CDX4-201ENST00000373514 KDM4FA0A1W2PPD8 638 aa28.2■■■□□ 2.1
CDX4-201ENST00000373514 MROH1Q8NDA8 1641 aa28.18■■■□□ 2.1
CDX4-201ENST00000373514 ROCK1Q13464 1354 aa28.17■■■□□ 2.1
CDX4-201ENST00000373514 ERBINQ96RT1 1412 aa28.16■■■□□ 2.1
CDX4-201ENST00000373514 CLTCQ00610 1675 aaKnown RBP28.16■■■□□ 2.1
CDX4-201ENST00000373514 DEPDC5O75140 1603 aa28.15■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms