RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 PNNQ9H307 717 aaKnown RBP12.7□□□□□ -0.38
COL4A6-202ENST00000372216 VPS8Q8N3P4 1428 aa12.7□□□□□ -0.38
COL4A6-202ENST00000372216 FOXD1Q16676 465 aa12.69□□□□□ -0.38
COL4A6-202ENST00000372216 FGD1P98174 961 aa12.69□□□□□ -0.38
COL4A6-202ENST00000372216 KANK4Q5T7N3 995 aaPredicted RBP12.69□□□□□ -0.38
COL4A6-202ENST00000372216 DNTTIP2Q5QJE6 756 aaKnown RBP12.68□□□□□ -0.38
COL4A6-202ENST00000372216 CASC1Q6TDU7 716 aa12.68□□□□□ -0.38
COL4A6-202ENST00000372216 MORC1Q86VD1 984 aa12.67□□□□□ -0.38
COL4A6-202ENST00000372216 RAPGEF2Q9Y4G8 1499 aa12.67□□□□□ -0.38
COL4A6-202ENST00000372216 FRAT1Q92837 279 aaPredicted RBP12.67□□□□□ -0.38
COL4A6-202ENST00000372216 ATAD2BQ9ULI0 1458 aa12.67□□□□□ -0.38
COL4A6-202ENST00000372216 SMARCA4P51532 1647 aa12.66□□□□□ -0.38
COL4A6-202ENST00000372216 HNRNPMP52272 730 aaKnown RBP eCLIP12.66□□□□□ -0.38
COL4A6-202ENST00000372216 PAK3O75914 559 aaPredicted RBP12.66□□□□□ -0.38
COL4A6-202ENST00000372216 ANKRD30AQ9BXX3 1397 aa12.66□□□□□ -0.38
COL4A6-202ENST00000372216 FHOD3Q2V2M9 1422 aa12.65□□□□□ -0.38
COL4A6-202ENST00000372216 HDGFL2Q7Z4V5 671 aaPredicted RBP12.65□□□□□ -0.38
COL4A6-202ENST00000372216 KCNJ4P48050 445 aa12.65□□□□□ -0.39
COL4A6-202ENST00000372216 NUP155O75694 1391 aa12.64□□□□□ -0.39
COL4A6-202ENST00000372216 KIF3BO15066 747 aa12.64□□□□□ -0.39
COL4A6-202ENST00000372216 TRIM44Q96DX7 344 aaPredicted RBP12.64□□□□□ -0.39
COL4A6-202ENST00000372216 FANCD2Q9BXW9 1451 aa12.64□□□□□ -0.39
COL4A6-202ENST00000372216 BECN1Q14457 450 aa12.63□□□□□ -0.39
COL4A6-202ENST00000372216 ROCK2O75116 1388 aaKnown RBP12.62□□□□□ -0.39
COL4A6-202ENST00000372216 JPH4Q96JJ6 628 aa12.62□□□□□ -0.39
COL4A6-202ENST00000372216 SUPT16HQ9Y5B9 1047 aaKnown RBP12.62□□□□□ -0.39
COL4A6-202ENST00000372216 SPAG9O60271 1321 aaKnown RBP12.61□□□□□ -0.39
COL4A6-202ENST00000372216 HSPA5P11021 654 aaKnown RBP12.61□□□□□ -0.39
COL4A6-202ENST00000372216 MPHOSPH9Q99550 1183 aa12.61□□□□□ -0.39
COL4A6-202ENST00000372216 DDRGK1Q96HY6 314 aa12.6□□□□□ -0.39
COL4A6-202ENST00000372216 NUTM2DQ5VT03 806 aaPredicted RBP12.6□□□□□ -0.39
COL4A6-202ENST00000372216 ERICH6BQ5W0A0 696 aa12.6□□□□□ -0.39
COL4A6-202ENST00000372216 SPRYD3Q8NCJ5 442 aa12.6□□□□□ -0.39
COL4A6-202ENST00000372216 APBB1O00213 710 aa12.6□□□□□ -0.39
COL4A6-202ENST00000372216 CCDC18Q5T9S5 1454 aa12.6□□□□□ -0.39
COL4A6-202ENST00000372216 RTF1Q92541 710 aaKnown RBP12.6□□□□□ -0.39
COL4A6-202ENST00000372216 CSB-PGBD3P0DP91 1061 aa12.59□□□□□ -0.39
COL4A6-202ENST00000372216 EID1Q9Y6B2 187 aa12.59□□□□□ -0.39
COL4A6-202ENST00000372216 WASHC2CQ9Y4E1 1318 aa12.59□□□□□ -0.39
COL4A6-202ENST00000372216 GLIPR1L2Q4G1C9 344 aa12.59□□□□□ -0.39
COL4A6-202ENST00000372216 CHMP4BQ9H444 224 aaKnown RBP12.58□□□□□ -0.4
COL4A6-202ENST00000372216 RGS3P49796 1198 aa12.58□□□□□ -0.4
COL4A6-202ENST00000372216 GOLGA6L22H0YM25 854 aa12.57□□□□□ -0.4
COL4A6-202ENST00000372216 MS4A1P11836 297 aa12.57□□□□□ -0.4
COL4A6-202ENST00000372216 FBXO3Q9UK99 471 aa12.56□□□□□ -0.4
COL4A6-202ENST00000372216 EIF3AQ14152 1382 aaKnown RBP12.56□□□□□ -0.4
COL4A6-202ENST00000372216 RAB3GAP2Q9H2M9 1393 aa12.56□□□□□ -0.4
COL4A6-202ENST00000372216 CYB5RLQ6IPT4 315 aa12.56□□□□□ -0.4
COL4A6-202ENST00000372216 KTN1Q86UP2 1357 aaKnown RBP12.55□□□□□ -0.4
COL4A6-202ENST00000372216 TIMELESSQ9UNS1 1208 aa12.55□□□□□ -0.4
COL4A6-202ENST00000372216 G3V3G9 751 aa12.54□□□□□ -0.4
COL4A6-202ENST00000372216 DCAF8Q5TAQ9 597 aa12.54□□□□□ -0.4
COL4A6-202ENST00000372216 RTN4Q9NQC3 1192 aaKnown RBP12.54□□□□□ -0.4
COL4A6-202ENST00000372216 OSCARQ8IYS5 282 aa12.53□□□□□ -0.4
COL4A6-202ENST00000372216 RSPH4AQ5TD94 716 aa12.53□□□□□ -0.4
COL4A6-202ENST00000372216 KLHL34Q8N239 644 aa12.53□□□□□ -0.4
COL4A6-202ENST00000372216 PTPRGP23470 1445 aa12.52□□□□□ -0.4
COL4A6-202ENST00000372216 HSP90AB1P08238 724 aaKnown RBP12.52□□□□□ -0.41
COL4A6-202ENST00000372216 TMX4Q9H1E5 349 aaPredicted RBP12.52□□□□□ -0.41
COL4A6-202ENST00000372216 MSH5O43196 834 aa12.52□□□□□ -0.41
COL4A6-202ENST00000372216 GNL2Q13823 731 aaKnown RBP12.52□□□□□ -0.41
COL4A6-202ENST00000372216 CHMP3Q9Y3E7 222 aa12.52□□□□□ -0.41
COL4A6-202ENST00000372216 AEBP2Q6ZN18 517 aaPredicted RBP12.51□□□□□ -0.41
COL4A6-202ENST00000372216 U2AF1L5P0DN76 240 aaPredicted RBP12.49□□□□□ -0.41
COL4A6-202ENST00000372216 U2AF1Q01081 240 aaKnown RBP eCLIP12.49□□□□□ -0.41
COL4A6-202ENST00000372216 NGDNQ8NEJ9 315 aaKnown RBP12.49□□□□□ -0.41
COL4A6-202ENST00000372216 PHF23Q9BUL5 403 aaPredicted RBP12.49□□□□□ -0.41
COL4A6-202ENST00000372216 WWC1Q8IX03 1113 aa12.49□□□□□ -0.41
COL4A6-202ENST00000372216 PPP4R2Q9NY27 417 aa12.47□□□□□ -0.41
COL4A6-202ENST00000372216 TERF2IPQ9NYB0 399 aa12.47□□□□□ -0.41
COL4A6-202ENST00000372216 KRI1Q8N9T8 703 aaKnown RBP12.47□□□□□ -0.41
COL4A6-202ENST00000372216 NUTM2FA1L443 756 aa12.47□□□□□ -0.41
COL4A6-202ENST00000372216 VPS53Q5VIR6 699 aa12.47□□□□□ -0.41
COL4A6-202ENST00000372216 DRC7Q8IY82 874 aa12.46□□□□□ -0.41
COL4A6-202ENST00000372216 GAPVD1Q14C86 1478 aa12.46□□□□□ -0.41
COL4A6-202ENST00000372216 FGD5Q6ZNL6 1462 aa12.46□□□□□ -0.41
COL4A6-202ENST00000372216 NAP1L5Q96NT1 182 aaPredicted RBP12.45□□□□□ -0.42
COL4A6-202ENST00000372216 CALD1Q05682 793 aaKnown RBP12.45□□□□□ -0.42
COL4A6-202ENST00000372216 RAD54L2Q9Y4B4 1467 aa12.45□□□□□ -0.42
COL4A6-202ENST00000372216 GOLGA6L4A6NEF3 574 aa12.45□□□□□ -0.42
COL4A6-202ENST00000372216 GOLGA6L6A8MZA4 724 aa12.45□□□□□ -0.42
COL4A6-202ENST00000372216 CREBRFQ8IUR6 639 aa12.45□□□□□ -0.42
COL4A6-202ENST00000372216 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.44□□□□□ -0.42
COL4A6-202ENST00000372216 ARID3AQ99856 593 aa12.44□□□□□ -0.42
COL4A6-202ENST00000372216 RALBP1Q15311 655 aa12.44□□□□□ -0.42
COL4A6-202ENST00000372216 TRAK1Q9UPV9 953 aa12.44□□□□□ -0.42
COL4A6-202ENST00000372216 RUSC2Q8N2Y8 1516 aa12.44□□□□□ -0.42
COL4A6-202ENST00000372216 PRDM2Q13029 1718 aa12.43□□□□□ -0.42
COL4A6-202ENST00000372216 CCER2I3L3R5 266 aa12.42□□□□□ -0.42
COL4A6-202ENST00000372216 AMPHP49418 695 aa12.42□□□□□ -0.42
COL4A6-202ENST00000372216 L3MBTL2Q969R5 705 aa12.42□□□□□ -0.42
COL4A6-202ENST00000372216 LTV1Q96GA3 475 aaPredicted RBP12.42□□□□□ -0.42
COL4A6-202ENST00000372216 IPO8O15397 1037 aaKnown RBP12.42□□□□□ -0.42
COL4A6-202ENST00000372216 HSP90B1P14625 803 aaKnown RBP12.42□□□□□ -0.42
COL4A6-202ENST00000372216 NOC3LQ8WTT2 800 aaKnown RBP12.41□□□□□ -0.42
COL4A6-202ENST00000372216 ANP32EQ9BTT0 268 aa12.41□□□□□ -0.42
COL4A6-202ENST00000372216 CCDC144AA2RUR9 1427 aa12.41□□□□□ -0.42
COL4A6-202ENST00000372216 FAM69CQ0P6D2 419 aa12.41□□□□□ -0.42
COL4A6-202ENST00000372216 MEX3CQ5U5Q3 659 aaKnown RBP12.41□□□□□ -0.42
COL4A6-202ENST00000372216 B4GALNT3Q6L9W6 998 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms