RNA–Protein interactions for RNA: ENST00000368069.7

COPA-202, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 1 (best) BASIC

Gene COPA, Length 4,664 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-202ENST00000368069 ANP32BQ92688 251 aaKnown RBP15.23■□□□□ 0.03
COPA-202ENST00000368069 TOP2BQ02880 1626 aa15.23■□□□□ 0.03
COPA-202ENST00000368069 NUDCQ9Y266 331 aa15.23■□□□□ 0.03
COPA-202ENST00000368069 FRAT1Q92837 279 aaPredicted RBP15.22■□□□□ 0.03
COPA-202ENST00000368069 HNRNPMP52272 730 aaKnown RBP eCLIP15.21■□□□□ 0.035e-9■□□□□ 9.9
COPA-202ENST00000368069 PRKRIP1Q9H875 184 aaPredicted RBP15.21■□□□□ 0.03
COPA-202ENST00000368069 RCAN3Q9UKA8 241 aa15.21■□□□□ 0.03
COPA-202ENST00000368069 MYH16Q9H6N6 1097 aa15.2■□□□□ 0.02
COPA-202ENST00000368069 MYOM3Q5VTT5 1437 aa15.2■□□□□ 0.02
COPA-202ENST00000368069 FTSJ3Q8IY81 847 aaKnown RBP15.2■□□□□ 0.02
COPA-202ENST00000368069 CFTRP13569 1480 aa15.2■□□□□ 0.02
COPA-202ENST00000368069 GAPVD1Q14C86 1478 aa15.2■□□□□ 0.02
COPA-202ENST00000368069 UACAQ9BZF9 1416 aa15.19■□□□□ 0.02
COPA-202ENST00000368069 KANK1Q14678 1352 aa15.19■□□□□ 0.02
COPA-202ENST00000368069 CASKIN1Q8WXD9 1431 aa15.18■□□□□ 0.02
COPA-202ENST00000368069 CUX1P39880 1505 aa15.17■□□□□ 0.02
COPA-202ENST00000368069 MAPK8IP3Q9UPT6 1336 aa15.16■□□□□ 0.02
COPA-202ENST00000368069 JPH4Q96JJ6 628 aa15.15■□□□□ 0.02
COPA-202ENST00000368069 ST20-MTHFSA0A0A6YYL1 179 aa15.14■□□□□ 0.01
COPA-202ENST00000368069 NLRP13Q86W25 1043 aa15.14■□□□□ 0.01
COPA-202ENST00000368069 NCOA2Q15596 1464 aa15.13■□□□□ 0.01
COPA-202ENST00000368069 DEKP35659 375 aaKnown RBP15.13■□□□□ 0.01
COPA-202ENST00000368069 ZBED9Q6R2W3 1325 aa15.13■□□□□ 0.01
COPA-202ENST00000368069 USP47Q96K76 1375 aa15.13■□□□□ 0.01
COPA-202ENST00000368069 FYCO1Q9BQS8 1478 aa15.12■□□□□ 0.01
COPA-202ENST00000368069 POGKQ9P215 609 aa15.12■□□□□ 0.01
COPA-202ENST00000368069 U2SURPO15042 1029 aaKnown RBP15.12■□□□□ 0.01
COPA-202ENST00000368069 EFCAB2Q5VUJ9 269 aa15.12■□□□□ 0.01
COPA-202ENST00000368069 KIF15Q9NS87 1388 aa15.12■□□□□ 0.01
COPA-202ENST00000368069 MORC1Q86VD1 984 aa15.12■□□□□ 0.01
COPA-202ENST00000368069 TCERG1O14776 1098 aaKnown RBP15.1■□□□□ 0.01
COPA-202ENST00000368069 ZNF644Q9H582 1327 aaPredicted RBP15.1■□□□□ 0.01
COPA-202ENST00000368069 MYBBP1AQ9BQG0 1328 aaKnown RBP15.1■□□□□ 0.01
COPA-202ENST00000368069 TIAM1Q13009 1591 aa15.09■□□□□ 0.01
COPA-202ENST00000368069 CCDC7Q96M83 1385 aa15.09■□□□□ 0.01
COPA-202ENST00000368069 RSPH4AQ5TD94 716 aa15.08■□□□□ 0.01
COPA-202ENST00000368069 HMGXB3Q12766 1538 aa15.08■□□□□ 0
COPA-202ENST00000368069 PDE3BQ13370 1112 aa15.07■□□□□ 0
COPA-202ENST00000368069 WASHC2AQ641Q2 1341 aa15.07■□□□□ 0
COPA-202ENST00000368069 SAFB2Q14151 953 aaKnown RBP eCLIP15.06■□□□□ 0
COPA-202ENST00000368069 KIF7Q2M1P5 1343 aa15.06■□□□□ 0
COPA-202ENST00000368069 CCDC144AA2RUR9 1427 aa15.06■□□□□ 0
COPA-202ENST00000368069 CNTLNQ9NXG0 1405 aa15.06■□□□□ 0
COPA-202ENST00000368069 GGT6Q6P531 493 aa15.05■□□□□ 0
COPA-202ENST00000368069 RTN4Q9NQC3 1192 aaKnown RBP15.05■□□□□ -0
COPA-202ENST00000368069 MS4A1P11836 297 aa15.05■□□□□ -0
COPA-202ENST00000368069 IPO9Q96P70 1041 aaKnown RBP15.04■□□□□ -0
COPA-202ENST00000368069 SRPK2P78362 688 aaKnown RBP15.04■□□□□ -0
COPA-202ENST00000368069 BICRAQ9NZM4 1560 aa15.04■□□□□ -0
COPA-202ENST00000368069 EFCAB5A4FU69 1503 aa15.03■□□□□ -0
COPA-202ENST00000368069 PANK3Q9H999 370 aa15.03■□□□□ -0
COPA-202ENST00000368069 AQRO60306 1485 aaKnown RBP eCLIP15.03■□□□□ -04e-7■■■■□ 24
COPA-202ENST00000368069 KIF3BO15066 747 aa15.02■□□□□ -0
COPA-202ENST00000368069 GOLGA2Q08379 1002 aa15.02■□□□□ -0
COPA-202ENST00000368069 EIF3AQ14152 1382 aaKnown RBP15.02□□□□□ -0.01
COPA-202ENST00000368069 CCDC146Q8IYE0 955 aa15.01□□□□□ -0.01
COPA-202ENST00000368069 SPAG9O60271 1321 aaKnown RBP15.01□□□□□ -0.01
COPA-202ENST00000368069 WDR97A6NE52 1622 aa15.01□□□□□ -0.01
COPA-202ENST00000368069 GOLGA6L22H0YM25 854 aa15□□□□□ -0.01
COPA-202ENST00000368069 C14orf37Q86TY3 774 aa15□□□□□ -0.01
COPA-202ENST00000368069 NESP48681 1621 aa15□□□□□ -0.01
COPA-202ENST00000368069 HFM1A2PYH4 1435 aa14.99□□□□□ -0.01
COPA-202ENST00000368069 STK26Q9P289 416 aa14.99□□□□□ -0.01
COPA-202ENST00000368069 ZBTB7CA1YPR0 619 aa14.99□□□□□ -0.01
COPA-202ENST00000368069 RRP1P56182 461 aaKnown RBP14.99□□□□□ -0.01
COPA-202ENST00000368069 EXOC6Q8TAG9 804 aa14.99□□□□□ -0.01
COPA-202ENST00000368069 PNNQ9H307 717 aaKnown RBP14.98□□□□□ -0.01
COPA-202ENST00000368069 POLA1P09884 1462 aaPredicted RBP14.98□□□□□ -0.01
COPA-202ENST00000368069 PTPRGP23470 1445 aa14.98□□□□□ -0.01
COPA-202ENST00000368069 TOPBP1Q92547 1522 aa14.98□□□□□ -0.01
COPA-202ENST00000368069 U2AF1L5P0DN76 240 aaPredicted RBP14.98□□□□□ -0.01
COPA-202ENST00000368069 U2AF1Q01081 240 aaKnown RBP eCLIP14.98□□□□□ -0.019e-13■■■■□ 24.4
COPA-202ENST00000368069 PRDM2Q13029 1718 aa14.97□□□□□ -0.01
COPA-202ENST00000368069 PLEKHG5O94827 1062 aa14.97□□□□□ -0.01
COPA-202ENST00000368069 TRIM44Q96DX7 344 aaPredicted RBP14.97□□□□□ -0.01
COPA-202ENST00000368069 PLIN1O60240 522 aa14.97□□□□□ -0.01
COPA-202ENST00000368069 FANCIQ9NVI1 1328 aa14.96□□□□□ -0.01
COPA-202ENST00000368069 CHMP4BQ9H444 224 aaKnown RBP14.96□□□□□ -0.01
COPA-202ENST00000368069 EHBP1L1Q8N3D4 1523 aa14.96□□□□□ -0.02
COPA-202ENST00000368069 NCLP19338 710 aaKnown RBP14.95□□□□□ -0.02
COPA-202ENST00000368069 ARID4BQ4LE39 1312 aaPredicted RBP14.95□□□□□ -0.02
COPA-202ENST00000368069 CASC1Q6TDU7 716 aa14.95□□□□□ -0.02
COPA-202ENST00000368069 ANKRD50Q9ULJ7 1429 aa14.94□□□□□ -0.02
COPA-202ENST00000368069 HSP90AB1P08238 724 aaKnown RBP14.93□□□□□ -0.02
COPA-202ENST00000368069 SPRYD3Q8NCJ5 442 aa14.93□□□□□ -0.02
COPA-202ENST00000368069 PEG3Q9GZU2 1588 aa14.92□□□□□ -0.02
COPA-202ENST00000368069 PCF11O94913 1555 aaKnown RBP14.92□□□□□ -0.02
COPA-202ENST00000368069 NBPF8Q3BBV2 869 aa14.92□□□□□ -0.02
COPA-202ENST00000368069 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.92□□□□□ -0.02
COPA-202ENST00000368069 PDE4AP27815 886 aa14.92□□□□□ -0.02
COPA-202ENST00000368069 HSCBQ8IWL3 235 aa14.92□□□□□ -0.02
COPA-202ENST00000368069 CENPJQ9HC77 1338 aaPredicted RBP14.91□□□□□ -0.02
COPA-202ENST00000368069 GRIN2BQ13224 1484 aa14.91□□□□□ -0.02
COPA-202ENST00000368069 CRBNQ96SW2 442 aa14.91□□□□□ -0.02
COPA-202ENST00000368069 RWDD1Q9H446 243 aaPredicted RBP14.91□□□□□ -0.02
COPA-202ENST00000368069 HDGFL2Q7Z4V5 671 aaPredicted RBP14.9□□□□□ -0.02
COPA-202ENST00000368069 DNMBPQ6XZF7 1577 aa14.89□□□□□ -0.03
COPA-202ENST00000368069 MLECQ14165 292 aa14.89□□□□□ -0.03
COPA-202ENST00000368069 GLIPR1L2Q4G1C9 344 aa14.89□□□□□ -0.03
COPA-202ENST00000368069 ITPRIPQ8IWB1 547 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms