RNA–Protein interactions for RNA: ENST00000356800.6

SMARCD3-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best) BASIC

Gene SMARCD3, Length 1,669 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-202ENST00000356800 ABCA9Q8IUA7 1624 aa27.42■■□□□ 1.98
SMARCD3-202ENST00000356800 CAMSAP2Q08AD1 1489 aa27.42■■□□□ 1.98
SMARCD3-202ENST00000356800 PTPRKQ15262 1439 aa27.39■■□□□ 1.97
SMARCD3-202ENST00000356800 PLCH2O75038 1416 aa27.36■■□□□ 1.97
SMARCD3-202ENST00000356800 ZNF777Q9ULD5 760 aaPredicted RBP27.36■■□□□ 1.97
SMARCD3-202ENST00000356800 SAMD9LQ8IVG5 1584 aa27.35■■□□□ 1.97
SMARCD3-202ENST00000356800 ARHGAP5Q13017 1502 aa27.35■■□□□ 1.97
SMARCD3-202ENST00000356800 DNMT1P26358 1616 aaKnown RBP27.35■■□□□ 1.97
SMARCD3-202ENST00000356800 ARAP3Q8WWN8 1544 aa27.31■■□□□ 1.96
SMARCD3-202ENST00000356800 DAPK1P53355 1430 aa27.3■■□□□ 1.96
SMARCD3-202ENST00000356800 ABCC5O15440 1437 aa27.29■■□□□ 1.96
SMARCD3-202ENST00000356800 CROCC2H7BZ55 1655 aa27.26■■□□□ 1.95
SMARCD3-202ENST00000356800 MBD5Q9P267 1494 aa27.23■■□□□ 1.95
SMARCD3-202ENST00000356800 ARHGEF5Q12774 1597 aa27.23■■□□□ 1.95
SMARCD3-202ENST00000356800 EFCAB2Q5VUJ9 269 aa27.22■■□□□ 1.95
SMARCD3-202ENST00000356800 DNAJC5Q9H3Z4 198 aa27.22■■□□□ 1.95
SMARCD3-202ENST00000356800 GLI2P10070 1586 aa27.22■■□□□ 1.95
SMARCD3-202ENST00000356800 SYCP2Q9BX26 1530 aa27.21■■□□□ 1.95
SMARCD3-202ENST00000356800 DIP2BQ9P265 1576 aa27.21■■□□□ 1.95
SMARCD3-202ENST00000356800 HNRNPMP52272 730 aaKnown RBP eCLIP27.2■■□□□ 1.94
SMARCD3-202ENST00000356800 CHIC2Q9UKJ5 165 aa27.2■■□□□ 1.94
SMARCD3-202ENST00000356800 CD109Q6YHK3 1445 aa27.2■■□□□ 1.94
SMARCD3-202ENST00000356800 SETD5Q9C0A6 1442 aa27.19■■□□□ 1.94
SMARCD3-202ENST00000356800 KIAA1107Q9UPP5 1409 aa27.19■■□□□ 1.94
SMARCD3-202ENST00000356800 FANCAO15360 1455 aa27.19■■□□□ 1.94
SMARCD3-202ENST00000356800 PLEKHH2Q8IVE3 1493 aa27.19■■□□□ 1.94
SMARCD3-202ENST00000356800 ABCC1P33527 1531 aa27.19■■□□□ 1.94
SMARCD3-202ENST00000356800 MAP3K4Q9Y6R4 1608 aa27.19■■□□□ 1.94
SMARCD3-202ENST00000356800 ARHGEF12Q9NZN5 1544 aa27.18■■□□□ 1.94
SMARCD3-202ENST00000356800 HFM1A2PYH4 1435 aa27.17■■□□□ 1.94
SMARCD3-202ENST00000356800 AKNAQ7Z591 1439 aa27.17■■□□□ 1.94
SMARCD3-202ENST00000356800 ADGBQ8N7X0 1667 aa27.16■■□□□ 1.94
SMARCD3-202ENST00000356800 NAIPQ13075 1403 aa27.15■■□□□ 1.94
SMARCD3-202ENST00000356800 RAB3GAP2Q9H2M9 1393 aa27.15■■□□□ 1.94
SMARCD3-202ENST00000356800 CCDC141Q6ZP82 1450 aa27.14■■□□□ 1.94
SMARCD3-202ENST00000356800 SHANK2Q9UPX8 1470 aa27.14■■□□□ 1.94
SMARCD3-202ENST00000356800 GCC2Q8IWJ2 1684 aa27.14■■□□□ 1.94
SMARCD3-202ENST00000356800 ROCK1Q13464 1354 aa27.13■■□□□ 1.93
SMARCD3-202ENST00000356800 HRCP23327 699 aa27.12■■□□□ 1.93
SMARCD3-202ENST00000356800 RRP7BPQ9NSQ0 103 aa27.11■■□□□ 1.93
SMARCD3-202ENST00000356800 ADGRL2O95490 1459 aa27.11■■□□□ 1.93
SMARCD3-202ENST00000356800 KIF13AQ9H1H9 1805 aa27.1■■□□□ 1.93
SMARCD3-202ENST00000356800 CFAP74Q9C0B2 1584 aa27.09■■□□□ 1.93
SMARCD3-202ENST00000356800 C9orf84Q5VXU9 1444 aa27.09■■□□□ 1.93
SMARCD3-202ENST00000356800 FAM69CQ0P6D2 419 aa27.09■■□□□ 1.93
SMARCD3-202ENST00000356800 RSPH4AQ5TD94 716 aa27.09■■□□□ 1.93
SMARCD3-202ENST00000356800 TRAPPC8Q9Y2L5 1435 aa27.07■■□□□ 1.92
SMARCD3-202ENST00000356800 NCOA1Q15788 1441 aa27.07■■□□□ 1.92
SMARCD3-202ENST00000356800 MAST1Q9Y2H9 1570 aa27.06■■□□□ 1.92
SMARCD3-202ENST00000356800 ADGRL1O94910 1474 aa27.06■■□□□ 1.92
SMARCD3-202ENST00000356800 KDM6BO15054 1643 aa27.05■■□□□ 1.92
SMARCD3-202ENST00000356800 TSPY4P0CV99 314 aa27.04■■□□□ 1.92
SMARCD3-202ENST00000356800 TSPY10P0CW01 314 aa27.04■■□□□ 1.92
SMARCD3-202ENST00000356800 PPRC1Q5VV67 1664 aaKnown RBP27.03■■□□□ 1.92
SMARCD3-202ENST00000356800 TSPOAP1O95153 1857 aa27.02■■□□□ 1.92
SMARCD3-202ENST00000356800 SCAPERQ9BY12 1400 aa27.02■■□□□ 1.92
SMARCD3-202ENST00000356800 NEO1Q92859 1461 aa27.02■■□□□ 1.92
SMARCD3-202ENST00000356800 ANKRD30AQ9BXX3 1397 aa27.01■■□□□ 1.91
SMARCD3-202ENST00000356800 CCER1Q8TC90 406 aaPredicted RBP27.01■■□□□ 1.91
SMARCD3-202ENST00000356800 DHX57Q6P158 1386 aaKnown RBP26.97■■□□□ 1.91
SMARCD3-202ENST00000356800 AFAP1Q8N556 730 aa26.97■■□□□ 1.91
SMARCD3-202ENST00000356800 PLXNC1O60486 1568 aa26.95■■□□□ 1.91
SMARCD3-202ENST00000356800 ZEB1P37275 1124 aaPredicted RBP26.92■■□□□ 1.9
SMARCD3-202ENST00000356800 KIF15Q9NS87 1388 aa26.92■■□□□ 1.9
SMARCD3-202ENST00000356800 ZFYVE16Q7Z3T8 1539 aa26.92■■□□□ 1.9
SMARCD3-202ENST00000356800 INO80Q9ULG1 1556 aaPredicted RBP26.92■■□□□ 1.9
SMARCD3-202ENST00000356800 POGZQ7Z3K3 1410 aa26.91■■□□□ 1.9
SMARCD3-202ENST00000356800 ZNF518AQ6AHZ1 1483 aa26.9■■□□□ 1.9
SMARCD3-202ENST00000356800 SPAG9O60271 1321 aaKnown RBP26.9■■□□□ 1.9
SMARCD3-202ENST00000356800 RTEL1-TNFRSF6BF6WH68 1400 aa26.9■■□□□ 1.9
SMARCD3-202ENST00000356800 KDM5CP41229 1560 aa26.89■■□□□ 1.89
SMARCD3-202ENST00000356800 ANKRD50Q9ULJ7 1429 aa26.88■■□□□ 1.89
SMARCD3-202ENST00000356800 TEX14Q8IWB6 1497 aa26.88■■□□□ 1.89
SMARCD3-202ENST00000356800 ATP7AQ04656 1500 aa26.88■■□□□ 1.89
SMARCD3-202ENST00000356800 RICTORQ6R327 1708 aa26.87■■□□□ 1.89
SMARCD3-202ENST00000356800 DENND4BO75064 1496 aaPredicted RBP26.85■■□□□ 1.89
SMARCD3-202ENST00000356800 KIDINS220Q9ULH0 1771 aa26.85■■□□□ 1.89
SMARCD3-202ENST00000356800 DUOX2Q9NRD8 1548 aa26.82■■□□□ 1.88
SMARCD3-202ENST00000356800 FRMPD1Q5SYB0 1578 aa26.81■■□□□ 1.88
SMARCD3-202ENST00000356800 RAPGEF3O95398 923 aa26.8■■□□□ 1.88
SMARCD3-202ENST00000356800 HECW2Q9P2P5 1572 aa26.79■■□□□ 1.88
SMARCD3-202ENST00000356800 MLH3Q9UHC1 1453 aa26.79■■□□□ 1.88
SMARCD3-202ENST00000356800 TRIM52Q96A61 297 aa26.76■■□□□ 1.87
SMARCD3-202ENST00000356800 CLSPNQ9HAW4 1339 aa26.74■■□□□ 1.87
SMARCD3-202ENST00000356800 ACIN1Q9UKV3 1341 aaKnown RBP26.74■■□□□ 1.87
SMARCD3-202ENST00000356800 ERBINQ96RT1 1412 aa26.74■■□□□ 1.87
SMARCD3-202ENST00000356800 MYT1LQ9UL68 1186 aa26.72■■□□□ 1.87
SMARCD3-202ENST00000356800 ABCA6Q8N139 1617 aa26.71■■□□□ 1.87
SMARCD3-202ENST00000356800 PZPP20742 1482 aa26.71■■□□□ 1.87
SMARCD3-202ENST00000356800 ZMYM4Q5VZL5 1548 aa26.7■■□□□ 1.87
SMARCD3-202ENST00000356800 COL17A1Q9UMD9 1497 aaPredicted RBP26.7■■□□□ 1.86
SMARCD3-202ENST00000356800 UNC13BO14795 1591 aa26.7■■□□□ 1.86
SMARCD3-202ENST00000356800 KDM5DQ9BY66 1539 aa26.68■■□□□ 1.86
SMARCD3-202ENST00000356800 TRHP20396 242 aaPredicted RBP26.68■■□□□ 1.86
SMARCD3-202ENST00000356800 MPHOSPH9Q99550 1183 aa26.68■■□□□ 1.86
SMARCD3-202ENST00000356800 DHX29Q7Z478 1369 aaKnown RBP26.66■■□□□ 1.86
SMARCD3-202ENST00000356800 DIP2CQ9Y2E4 1556 aa26.66■■□□□ 1.86
SMARCD3-202ENST00000356800 EIF2AK4Q9P2K8 1649 aaKnown RBP26.64■■□□□ 1.86
SMARCD3-202ENST00000356800 NUP155O75694 1391 aa26.64■■□□□ 1.85
SMARCD3-202ENST00000356800 A2MP01023 1474 aa26.64■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms