RNA–Protein interactions for RNA: ENST00000356800.6

SMARCD3-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best) BASIC

Gene SMARCD3, Length 1,669 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-202ENST00000356800 NISCHQ9Y2I1 1504 aa42.05■■■■■ 4.32
SMARCD3-202ENST00000356800 CCDC180Q9P1Z9 1646 aa36.87■■■■□ 3.49
SMARCD3-202ENST00000356800 ZCCHC6Q5VYS8 1495 aaKnown RBP35.26■■■■□ 3.24
SMARCD3-202ENST00000356800 ABCC9O60706 1549 aa35.11■■■■□ 3.21
SMARCD3-202ENST00000356800 DCAF1Q9Y4B6 1507 aa34.77■■■■□ 3.16
SMARCD3-202ENST00000356800 DCAF8L2P0C7V8 631 aa34.73■■■■□ 3.15
SMARCD3-202ENST00000356800 MYO15BQ96JP2 1530 aa34.49■■■■□ 3.11
SMARCD3-202ENST00000356800 NACADO15069 1562 aa34.38■■■■□ 3.09
SMARCD3-202ENST00000356800 RB1CC1Q8TDY2 1594 aa34.16■■■■□ 3.06
SMARCD3-202ENST00000356800 SHROOM4Q9ULL8 1493 aa34■■■■□ 3.03
SMARCD3-202ENST00000356800 SCRIBQ14160 1630 aa33.83■■■■□ 3.01
SMARCD3-202ENST00000356800 UNC13AQ9UPW8 1703 aa33.57■■■□□ 2.96
SMARCD3-202ENST00000356800 BICRAQ9NZM4 1560 aa33.2■■■□□ 2.91
SMARCD3-202ENST00000356800 PABPN1Q86U42 306 aaKnown RBP eCLIP33.02■■■□□ 2.88
SMARCD3-202ENST00000356800 CECR2Q9BXF3 1484 aa32.71■■■□□ 2.83
SMARCD3-202ENST00000356800 SUPT5HO00267 1087 aaKnown RBP32.51■■■□□ 2.79
SMARCD3-202ENST00000356800 MROH2BQ7Z745 1585 aa32.49■■■□□ 2.79
SMARCD3-202ENST00000356800 RSF1Q96T23 1441 aaPredicted RBP32.48■■■□□ 2.79
SMARCD3-202ENST00000356800 BAZ1AQ9NRL2 1556 aaPredicted RBP32.48■■■□□ 2.79
SMARCD3-202ENST00000356800 SMARCA4P51532 1647 aa32.42■■■□□ 2.78
SMARCD3-202ENST00000356800 WIZO95785 1651 aa32.22■■■□□ 2.75
SMARCD3-202ENST00000356800 EIF4G1Q04637 1599 aaKnown RBP32.18■■■□□ 2.74
SMARCD3-202ENST00000356800 PEG3Q9GZU2 1588 aa32.04■■■□□ 2.72
SMARCD3-202ENST00000356800 ATAD2BQ9ULI0 1458 aa31.95■■■□□ 2.7
SMARCD3-202ENST00000356800 SMARCA2P51531 1590 aa31.91■■■□□ 2.7
SMARCD3-202ENST00000356800 TOP2AP11388 1531 aaKnown RBP31.85■■■□□ 2.69
SMARCD3-202ENST00000356800 CC2D2AQ9P2K1 1620 aa31.8■■■□□ 2.68
SMARCD3-202ENST00000356800 NCAPD3P42695 1498 aa31.73■■■□□ 2.67
SMARCD3-202ENST00000356800 BAZ1BQ9UIG0 1483 aaKnown RBP31.72■■■□□ 2.67
SMARCD3-202ENST00000356800 HMGXB3Q12766 1538 aa31.67■■■□□ 2.66
SMARCD3-202ENST00000356800 CCDC88BA6NC98 1476 aa31.51■■■□□ 2.63
SMARCD3-202ENST00000356800 DNAJC5BQ9UF47 199 aa31.31■■■□□ 2.6
SMARCD3-202ENST00000356800 CHIC1Q5VXU3 224 aa30.98■■■□□ 2.55
SMARCD3-202ENST00000356800 CFTRP13569 1480 aa30.93■■■□□ 2.54
SMARCD3-202ENST00000356800 CADPSQ9ULU8 1353 aa30.87■■■□□ 2.53
SMARCD3-202ENST00000356800 PRDM2Q13029 1718 aa30.83■■■□□ 2.53
SMARCD3-202ENST00000356800 NESP48681 1621 aa30.75■■■□□ 2.51
SMARCD3-202ENST00000356800 ABCC8Q09428 1581 aa30.75■■■□□ 2.51
SMARCD3-202ENST00000356800 LAMC3Q9Y6N6 1575 aa30.71■■■□□ 2.51
SMARCD3-202ENST00000356800 TRIM41Q8WV44 630 aa30.58■■■□□ 2.49
SMARCD3-202ENST00000356800 WRNQ14191 1432 aaPredicted RBP eCLIP30.55■■■□□ 2.48
SMARCD3-202ENST00000356800 FANCD2Q9BXW9 1451 aa30.54■■■□□ 2.48
SMARCD3-202ENST00000356800 SYNJ1O43426 1573 aa30.5■■■□□ 2.47
SMARCD3-202ENST00000356800 PDS5BQ9NTI5 1447 aa30.44■■■□□ 2.46
SMARCD3-202ENST00000356800 KIF21AQ7Z4S6 1674 aa30.41■■■□□ 2.46
SMARCD3-202ENST00000356800 CUX1P39880 1505 aa30.4■■■□□ 2.46
SMARCD3-202ENST00000356800 TOP2BQ02880 1626 aa30.39■■■□□ 2.46
SMARCD3-202ENST00000356800 BIVM-ERCC5R4GMW8 1640 aa30.39■■■□□ 2.46
SMARCD3-202ENST00000356800 CEP164Q9UPV0 1460 aa30.37■■■□□ 2.45
SMARCD3-202ENST00000356800 DNMBPQ6XZF7 1577 aa30.22■■■□□ 2.43
SMARCD3-202ENST00000356800 URB2Q14146 1524 aaKnown RBP30.21■■■□□ 2.43
SMARCD3-202ENST00000356800 TOPBP1Q92547 1522 aa30.18■■■□□ 2.42
SMARCD3-202ENST00000356800 ERCC6Q03468 1493 aa30.1■■■□□ 2.41
SMARCD3-202ENST00000356800 MRC2Q9UBG0 1479 aa30.1■■■□□ 2.41
SMARCD3-202ENST00000356800 FGD5Q6ZNL6 1462 aa30.1■■■□□ 2.41
SMARCD3-202ENST00000356800 SOGA1O94964 1423 aa30.08■■■□□ 2.41
SMARCD3-202ENST00000356800 FAM9AQ8IZU1 332 aaPredicted RBP30.03■■■□□ 2.4
SMARCD3-202ENST00000356800 RUSC2Q8N2Y8 1516 aa30.01■■■□□ 2.4
SMARCD3-202ENST00000356800 POLA1P09884 1462 aaPredicted RBP30.01■■■□□ 2.39
SMARCD3-202ENST00000356800 THOC2Q8NI27 1593 aaKnown RBP30■■■□□ 2.39
SMARCD3-202ENST00000356800 WDR62O43379 1518 aa29.98■■■□□ 2.39
SMARCD3-202ENST00000356800 EEA1Q15075 1411 aa29.91■■■□□ 2.38
SMARCD3-202ENST00000356800 RAD54L2Q9Y4B4 1467 aa29.91■■■□□ 2.38
SMARCD3-202ENST00000356800 ABCA10Q8WWZ4 1543 aa29.83■■■□□ 2.37
SMARCD3-202ENST00000356800 WDR97A6NE52 1622 aa29.83■■■□□ 2.37
SMARCD3-202ENST00000356800 CUX2O14529 1486 aa29.82■■■□□ 2.36
SMARCD3-202ENST00000356800 KIF27Q86VH2 1401 aa29.8■■■□□ 2.36
SMARCD3-202ENST00000356800 TARBP1Q13395 1621 aaKnown RBP29.8■■■□□ 2.36
SMARCD3-202ENST00000356800 LOC105371045A0A1W2PR82 267 aa29.78■■■□□ 2.36
SMARCD3-202ENST00000356800 CSRNP3Q8WYN3 585 aa29.78■■■□□ 2.36
SMARCD3-202ENST00000356800 IFT140Q96RY7 1462 aa29.67■■■□□ 2.34
SMARCD3-202ENST00000356800 ABCA5Q8WWZ7 1642 aa29.65■■■□□ 2.34
SMARCD3-202ENST00000356800 TDRD9Q8NDG6 1382 aaKnown RBP29.62■■■□□ 2.33
SMARCD3-202ENST00000356800 KIF21BO75037 1637 aa29.61■■■□□ 2.33
SMARCD3-202ENST00000356800 EHMT2Q96KQ7 1210 aa29.6■■■□□ 2.33
SMARCD3-202ENST00000356800 IGF1RP08069 1367 aa29.6■■■□□ 2.33
SMARCD3-202ENST00000356800 GAPVD1Q14C86 1478 aa29.55■■■□□ 2.32
SMARCD3-202ENST00000356800 PRXQ9BXM0 1461 aa29.55■■■□□ 2.32
SMARCD3-202ENST00000356800 ZNF608Q9ULD9 1512 aaPredicted RBP29.55■■■□□ 2.32
SMARCD3-202ENST00000356800 AQRO60306 1485 aaKnown RBP eCLIP29.51■■■□□ 2.31
SMARCD3-202ENST00000356800 GOLGA3Q08378 1498 aa29.5■■■□□ 2.31
SMARCD3-202ENST00000356800 RAPGEF2Q9Y4G8 1499 aa29.49■■■□□ 2.31
SMARCD3-202ENST00000356800 PBRM1Q86U86 1689 aa29.47■■■□□ 2.31
SMARCD3-202ENST00000356800 ERICH3Q5RHP9 1530 aa29.47■■■□□ 2.31
SMARCD3-202ENST00000356800 EIF4G3O43432 1585 aaKnown RBP29.45■■■□□ 2.31
SMARCD3-202ENST00000356800 CUL7Q14999 1698 aa29.42■■■□□ 2.3
SMARCD3-202ENST00000356800 CARMIL1Q5VZK9 1371 aa29.42■■■□□ 2.3
SMARCD3-202ENST00000356800 GRIN2BQ13224 1484 aa29.37■■■□□ 2.29
SMARCD3-202ENST00000356800 UBTFP17480 764 aaKnown RBP29.34■■■□□ 2.29
SMARCD3-202ENST00000356800 TNIKQ9UKE5 1360 aa29.33■■■□□ 2.29
SMARCD3-202ENST00000356800 ADAMTS12P58397 1594 aa29.28■■■□□ 2.28
SMARCD3-202ENST00000356800 SNAPC4Q5SXM2 1469 aa29.23■■■□□ 2.27
SMARCD3-202ENST00000356800 FHAD1B1AJZ9 1412 aa29.22■■■□□ 2.27
SMARCD3-202ENST00000356800 MAGI1Q96QZ7 1491 aaPredicted RBP29.17■■■□□ 2.26
SMARCD3-202ENST00000356800 CEP162Q5TB80 1403 aa29.16■■■□□ 2.26
SMARCD3-202ENST00000356800 CTTNBP2Q8WZ74 1663 aa29.08■■■□□ 2.24
SMARCD3-202ENST00000356800 SYNJ2O15056 1496 aa29.06■■■□□ 2.24
SMARCD3-202ENST00000356800 GRIN2AQ12879 1464 aa29.03■■■□□ 2.24
SMARCD3-202ENST00000356800 CLIP1P30622 1438 aa29.01■■■□□ 2.24
SMARCD3-202ENST00000356800 RANGAP1P46060 587 aaPredicted RBP28.96■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 114.5 ms