RNA–Protein interactions for RNA: ENST00000356147.3

PTPRA-203, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,135 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-203ENST00000356147 CTTNBP2Q8WZ74 1663 aa13.75□□□□□ -0.21
PTPRA-203ENST00000356147 SUPT6HQ7KZ85 1726 aaKnown RBP13.74□□□□□ -0.21
PTPRA-203ENST00000356147 DNMBPQ6XZF7 1577 aa13.73□□□□□ -0.21
PTPRA-203ENST00000356147 NUDCQ9Y266 331 aa13.72□□□□□ -0.21
PTPRA-203ENST00000356147 CDK13Q14004 1512 aaKnown RBP13.72□□□□□ -0.21
PTPRA-203ENST00000356147 UGGT2Q9NYU1 1516 aa13.72□□□□□ -0.21
PTPRA-203ENST00000356147 ANP32AP39687 249 aaKnown RBP13.72□□□□□ -0.21
PTPRA-203ENST00000356147 EHBP1L1Q8N3D4 1523 aa13.71□□□□□ -0.22
PTPRA-203ENST00000356147 ANKRD30BQ9BXX2 1392 aa13.7□□□□□ -0.22
PTPRA-203ENST00000356147 ZBTB47Q9UFB7 747 aaPredicted RBP13.7□□□□□ -0.22
PTPRA-203ENST00000356147 TMC1Q8TDI8 760 aa13.69□□□□□ -0.22
PTPRA-203ENST00000356147 ZNF777Q9ULD5 760 aaPredicted RBP13.69□□□□□ -0.22
PTPRA-203ENST00000356147 CUL7Q14999 1698 aa13.68□□□□□ -0.22
PTPRA-203ENST00000356147 CC2D2AQ9P2K1 1620 aa13.68□□□□□ -0.22
PTPRA-203ENST00000356147 IPO9Q96P70 1041 aaKnown RBP13.68□□□□□ -0.22
PTPRA-203ENST00000356147 RTN4Q9NQC3 1192 aaKnown RBP13.68□□□□□ -0.22
PTPRA-203ENST00000356147 DNAJC5BQ9UF47 199 aa13.68□□□□□ -0.22
PTPRA-203ENST00000356147 LAS1LQ9Y4W2 734 aaKnown RBP13.68□□□□□ -0.22
PTPRA-203ENST00000356147 GAPVD1Q14C86 1478 aa13.67□□□□□ -0.22
PTPRA-203ENST00000356147 SKAP1Q86WV1 359 aa13.67□□□□□ -0.22
PTPRA-203ENST00000356147 HECW1Q76N89 1606 aa13.67□□□□□ -0.22
PTPRA-203ENST00000356147 RTL5Q5HYW3 569 aaPredicted RBP13.67□□□□□ -0.22
PTPRA-203ENST00000356147 KDM2AQ9Y2K7 1162 aa13.67□□□□□ -0.22
PTPRA-203ENST00000356147 SAMD9Q5K651 1589 aa13.66□□□□□ -0.22
PTPRA-203ENST00000356147 SMG6Q86US8 1419 aaKnown RBP13.66□□□□□ -0.22
PTPRA-203ENST00000356147 SPATA31E1Q6ZUB1 1445 aa13.66□□□□□ -0.22
PTPRA-203ENST00000356147 RPRD2Q5VT52 1461 aaKnown RBP13.66□□□□□ -0.22
PTPRA-203ENST00000356147 URB2Q14146 1524 aaKnown RBP13.65□□□□□ -0.22
PTPRA-203ENST00000356147 DHX29Q7Z478 1369 aaKnown RBP13.65□□□□□ -0.22
PTPRA-203ENST00000356147 EXOC6Q8TAG9 804 aa13.65□□□□□ -0.22
PTPRA-203ENST00000356147 TEX14Q8IWB6 1497 aa13.65□□□□□ -0.23
PTPRA-203ENST00000356147 USP47Q96K76 1375 aa13.64□□□□□ -0.23
PTPRA-203ENST00000356147 PNISRQ8TF01 805 aaKnown RBP13.64□□□□□ -0.23
PTPRA-203ENST00000356147 MYT1LQ9UL68 1186 aa13.64□□□□□ -0.23
PTPRA-203ENST00000356147 EPRSP07814 1512 aaKnown RBP13.63□□□□□ -0.23
PTPRA-203ENST00000356147 GCC2Q8IWJ2 1684 aa13.63□□□□□ -0.23
PTPRA-203ENST00000356147 ARHGEF11O15085 1522 aa13.63□□□□□ -0.23
PTPRA-203ENST00000356147 TCOF1Q13428 1488 aaKnown RBP13.63□□□□□ -0.23
PTPRA-203ENST00000356147 PKD2Q13563 968 aa13.62□□□□□ -0.23
PTPRA-203ENST00000356147 THOC2Q8NI27 1593 aaKnown RBP13.62□□□□□ -0.23
PTPRA-203ENST00000356147 IL27Q8NEV9 243 aa13.62□□□□□ -0.23
PTPRA-203ENST00000356147 ANO8Q9HCE9 1232 aaPredicted RBP13.61□□□□□ -0.23
PTPRA-203ENST00000356147 DAPK1P53355 1430 aa13.61□□□□□ -0.23
PTPRA-203ENST00000356147 ABCC5O15440 1437 aa13.6□□□□□ -0.23
PTPRA-203ENST00000356147 PLIN1O60240 522 aa13.59□□□□□ -0.23
PTPRA-203ENST00000356147 CARD11Q9BXL7 1154 aa13.59□□□□□ -0.23
PTPRA-203ENST00000356147 RNF123Q5XPI4 1314 aa13.59□□□□□ -0.23
PTPRA-203ENST00000356147 ST20-MTHFSA0A0A6YYL1 179 aa13.58□□□□□ -0.24
PTPRA-203ENST00000356147 BCORL1Q5H9F3 1711 aa13.58□□□□□ -0.24
PTPRA-203ENST00000356147 CDCA7LQ96GN5 454 aa13.57□□□□□ -0.24
PTPRA-203ENST00000356147 LAMC3Q9Y6N6 1575 aa13.57□□□□□ -0.24
PTPRA-203ENST00000356147 RRP1P56182 461 aaKnown RBP13.57□□□□□ -0.24
PTPRA-203ENST00000356147 MIA2Q96PC5 1412 aa13.56□□□□□ -0.24
PTPRA-203ENST00000356147 NEFMP07197 916 aa13.56□□□□□ -0.24
PTPRA-203ENST00000356147 CFDP1Q9UEE9 299 aaPredicted RBP13.56□□□□□ -0.24
PTPRA-203ENST00000356147 PDE4AP27815 886 aa13.55□□□□□ -0.24
PTPRA-203ENST00000356147 RCAN3Q9UKA8 241 aa13.55□□□□□ -0.24
PTPRA-203ENST00000356147 PDS5BQ9NTI5 1447 aa13.54□□□□□ -0.24
PTPRA-203ENST00000356147 ABCA5Q8WWZ7 1642 aa13.54□□□□□ -0.24
PTPRA-203ENST00000356147 DCAF11Q8TEB1 546 aa13.53□□□□□ -0.24
PTPRA-203ENST00000356147 PZPP20742 1482 aa13.53□□□□□ -0.24
PTPRA-203ENST00000356147 SLC4A3P48751 1232 aa13.53□□□□□ -0.24
PTPRA-203ENST00000356147 PRG4Q92954 1404 aaPredicted RBP13.51□□□□□ -0.25
PTPRA-203ENST00000356147 CC2D1BQ5T0F9 858 aaKnown RBP13.5□□□□□ -0.25
PTPRA-203ENST00000356147 ROCK1Q13464 1354 aa13.5□□□□□ -0.25
PTPRA-203ENST00000356147 RGL3Q3MIN7 710 aa13.5□□□□□ -0.25
PTPRA-203ENST00000356147 MYBBP1AQ9BQG0 1328 aaKnown RBP13.49□□□□□ -0.25
PTPRA-203ENST00000356147 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.48□□□□□ -0.25
PTPRA-203ENST00000356147 WDR62O43379 1518 aa13.48□□□□□ -0.25
PTPRA-203ENST00000356147 IQGAP2Q13576 1575 aa13.48□□□□□ -0.25
PTPRA-203ENST00000356147 KIAA1107Q9UPP5 1409 aa13.48□□□□□ -0.25
PTPRA-203ENST00000356147 BACH2Q9BYV9 841 aa13.48□□□□□ -0.25
PTPRA-203ENST00000356147 NUP155O75694 1391 aa13.48□□□□□ -0.25
PTPRA-203ENST00000356147 KIF15Q9NS87 1388 aa13.48□□□□□ -0.25
PTPRA-203ENST00000356147 TCERG1O14776 1098 aaKnown RBP13.47□□□□□ -0.25
PTPRA-203ENST00000356147 CRBNQ96SW2 442 aa13.47□□□□□ -0.25
PTPRA-203ENST00000356147 C20orf194Q5TEA3 1177 aa13.46□□□□□ -0.26
PTPRA-203ENST00000356147 DNMT1P26358 1616 aaKnown RBP13.45□□□□□ -0.26
PTPRA-203ENST00000356147 PRKCSHP14314 528 aaPredicted RBP13.45□□□□□ -0.26
PTPRA-203ENST00000356147 MBD5Q9P267 1494 aa13.45□□□□□ -0.26
PTPRA-203ENST00000356147 LRPPRCP42704 1394 aaKnown RBP13.45□□□□□ -0.26
PTPRA-203ENST00000356147 FBLN2P98095 1184 aa13.44□□□□□ -0.26
PTPRA-203ENST00000356147 NBPF1Q3BBV0 1214 aa13.44□□□□□ -0.26
PTPRA-203ENST00000356147 POLR1AO95602 1720 aaPredicted RBP13.44□□□□□ -0.26
PTPRA-203ENST00000356147 KDM5CP41229 1560 aa13.44□□□□□ -0.26
PTPRA-203ENST00000356147 NUP153P49790 1475 aaKnown RBP13.44□□□□□ -0.26
PTPRA-203ENST00000356147 CAMSAP2Q08AD1 1489 aa13.43□□□□□ -0.26
PTPRA-203ENST00000356147 RALBP1Q15311 655 aa13.42□□□□□ -0.26
PTPRA-203ENST00000356147 BRD4O60885 1362 aaPredicted RBP13.42□□□□□ -0.26
PTPRA-203ENST00000356147 ROCK2O75116 1388 aaKnown RBP13.42□□□□□ -0.26
PTPRA-203ENST00000356147 BRPF3Q9ULD4 1205 aa13.42□□□□□ -0.26
PTPRA-203ENST00000356147 ANKRD50Q9ULJ7 1429 aa13.42□□□□□ -0.26
PTPRA-203ENST00000356147 NLRP13Q86W25 1043 aa13.42□□□□□ -0.26
PTPRA-203ENST00000356147 HNRNPMP52272 730 aaKnown RBP eCLIP13.4□□□□□ -0.261e-6■■■■□ 22.9
PTPRA-203ENST00000356147 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.4□□□□□ -0.268e-7■■■□□ 18.7
PTPRA-203ENST00000356147 KIF21AQ7Z4S6 1674 aa13.39□□□□□ -0.27
PTPRA-203ENST00000356147 ANKRD30AQ9BXX3 1397 aa13.39□□□□□ -0.27
PTPRA-203ENST00000356147 KTN1Q86UP2 1357 aaKnown RBP13.39□□□□□ -0.27
PTPRA-203ENST00000356147 ARID4BQ4LE39 1312 aaPredicted RBP13.39□□□□□ -0.27
PTPRA-203ENST00000356147 TARBP1Q13395 1621 aaKnown RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms