RNA–Protein interactions for RNA: ENST00000356147.3

PTPRA-203, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,135 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-203ENST00000356147 NISCHQ9Y2I1 1504 aa19.74■□□□□ 0.75
PTPRA-203ENST00000356147 SHROOM4Q9ULL8 1493 aa17.67■□□□□ 0.42
PTPRA-203ENST00000356147 SUPT5HO00267 1087 aaKnown RBP17.48■□□□□ 0.39
PTPRA-203ENST00000356147 HRCP23327 699 aa16.99■□□□□ 0.31
PTPRA-203ENST00000356147 MYO15BQ96JP2 1530 aa16.98■□□□□ 0.31
PTPRA-203ENST00000356147 PCGF6Q9BYE7 350 aa16.97■□□□□ 0.31
PTPRA-203ENST00000356147 DCAF8L2P0C7V8 631 aa16.93■□□□□ 0.3
PTPRA-203ENST00000356147 CHIC1Q5VXU3 224 aa16.92■□□□□ 0.3
PTPRA-203ENST00000356147 PPARGC1BQ86YN6 1023 aaKnown RBP16.9■□□□□ 0.3
PTPRA-203ENST00000356147 ZCCHC6Q5VYS8 1495 aaKnown RBP16.71■□□□□ 0.27
PTPRA-203ENST00000356147 LOC105371045A0A1W2PR82 267 aa16.67■□□□□ 0.26
PTPRA-203ENST00000356147 CCDC180Q9P1Z9 1646 aa16.34■□□□□ 0.21
PTPRA-203ENST00000356147 DCAF1Q9Y4B6 1507 aa16.32■□□□□ 0.2
PTPRA-203ENST00000356147 EHMT2Q96KQ7 1210 aa16.32■□□□□ 0.2
PTPRA-203ENST00000356147 TRIM26Q12899 539 aaPredicted RBP16.3■□□□□ 0.2
PTPRA-203ENST00000356147 FAM9AQ8IZU1 332 aaPredicted RBP16.24■□□□□ 0.19
PTPRA-203ENST00000356147 TRIM41Q8WV44 630 aa16.07■□□□□ 0.16
PTPRA-203ENST00000356147 SCAF1Q9H7N4 1312 aaKnown RBP16.01■□□□□ 0.15
PTPRA-203ENST00000356147 ZEB1P37275 1124 aaPredicted RBP15.96■□□□□ 0.14
PTPRA-203ENST00000356147 RSF1Q96T23 1441 aaPredicted RBP15.87■□□□□ 0.13
PTPRA-203ENST00000356147 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.84■□□□□ 0.13
PTPRA-203ENST00000356147 TTBK1Q5TCY1 1321 aaPredicted RBP15.83■□□□□ 0.13
PTPRA-203ENST00000356147 ABCC9O60706 1549 aa15.82■□□□□ 0.12
PTPRA-203ENST00000356147 SCRIBQ14160 1630 aa15.82■□□□□ 0.12
PTPRA-203ENST00000356147 RB1CC1Q8TDY2 1594 aa15.8■□□□□ 0.12
PTPRA-203ENST00000356147 PELP1Q8IZL8 1130 aaKnown RBP15.76■□□□□ 0.11
PTPRA-203ENST00000356147 CCER1Q8TC90 406 aaPredicted RBP15.73■□□□□ 0.11
PTPRA-203ENST00000356147 NEUROD1Q13562 356 aa15.7■□□□□ 0.1
PTPRA-203ENST00000356147 ACIN1Q9UKV3 1341 aaKnown RBP15.63■□□□□ 0.09
PTPRA-203ENST00000356147 CECR2Q9BXF3 1484 aa15.6■□□□□ 0.09
PTPRA-203ENST00000356147 GTF3C3Q9Y5Q9 886 aa15.59■□□□□ 0.09
PTPRA-203ENST00000356147 DIEXFQ68CQ4 756 aaKnown RBP15.57■□□□□ 0.08
PTPRA-203ENST00000356147 MROH2BQ7Z745 1585 aa15.5■□□□□ 0.07
PTPRA-203ENST00000356147 YTHDC1Q96MU7 727 aaKnown RBP15.48■□□□□ 0.07
PTPRA-203ENST00000356147 WIZO95785 1651 aa15.44■□□□□ 0.06
PTPRA-203ENST00000356147 CENPBP07199 599 aaPredicted RBP15.43■□□□□ 0.06
PTPRA-203ENST00000356147 UBTFP17480 764 aaKnown RBP15.34■□□□□ 0.05
PTPRA-203ENST00000356147 ABCC8Q09428 1581 aa15.33■□□□□ 0.04
PTPRA-203ENST00000356147 CCDC88BA6NC98 1476 aa15.31■□□□□ 0.04
PTPRA-203ENST00000356147 HNRNPUL2Q1KMD3 747 aaKnown RBP15.3■□□□□ 0.04
PTPRA-203ENST00000356147 CEP162Q5TB80 1403 aa15.28■□□□□ 0.04
PTPRA-203ENST00000356147 ZNF316A6NFI3 1004 aaPredicted RBP15.28■□□□□ 0.04
PTPRA-203ENST00000356147 SOGA1O94964 1423 aa15.28■□□□□ 0.04
PTPRA-203ENST00000356147 MIER1Q8N108 512 aa15.25■□□□□ 0.03
PTPRA-203ENST00000356147 RANGAP1P46060 587 aaPredicted RBP15.24■□□□□ 0.03
PTPRA-203ENST00000356147 RUSC2Q8N2Y8 1516 aa15.22■□□□□ 0.03
PTPRA-203ENST00000356147 CSRNP3Q8WYN3 585 aa15.18■□□□□ 0.02
PTPRA-203ENST00000356147 BAZ1AQ9NRL2 1556 aaPredicted RBP15.17■□□□□ 0.02
PTPRA-203ENST00000356147 WRNQ14191 1432 aaPredicted RBP eCLIP15.16■□□□□ 0.02
PTPRA-203ENST00000356147 EIF4G1Q04637 1599 aaKnown RBP15.16■□□□□ 0.02
PTPRA-203ENST00000356147 NACADO15069 1562 aa15.13■□□□□ 0.01
PTPRA-203ENST00000356147 TNIKQ9UKE5 1360 aa15.12■□□□□ 0.01
PTPRA-203ENST00000356147 TOP2AP11388 1531 aaKnown RBP15.02□□□□□ -0.01
PTPRA-203ENST00000356147 SMARCA2P51531 1590 aa15.01□□□□□ -0.01
PTPRA-203ENST00000356147 PABPN1Q86U42 306 aaKnown RBP eCLIP14.99□□□□□ -0.014e-6■■□□□ 13.3
PTPRA-203ENST00000356147 GOLGA3Q08378 1498 aa14.98□□□□□ -0.01
PTPRA-203ENST00000356147 APLP2Q06481 763 aa14.98□□□□□ -0.01
PTPRA-203ENST00000356147 MYT1Q01538 1121 aa14.95□□□□□ -0.02
PTPRA-203ENST00000356147 SMARCA4P51532 1647 aa14.94□□□□□ -0.02
PTPRA-203ENST00000356147 CLIP1P30622 1438 aa14.93□□□□□ -0.02
PTPRA-203ENST00000356147 EEA1Q15075 1411 aa14.9□□□□□ -0.02
PTPRA-203ENST00000356147 ITGAEP38570 1179 aa14.84□□□□□ -0.03
PTPRA-203ENST00000356147 SUPT16HQ9Y5B9 1047 aaKnown RBP14.84□□□□□ -0.03
PTPRA-203ENST00000356147 RAPGEF2Q9Y4G8 1499 aa14.83□□□□□ -0.04
PTPRA-203ENST00000356147 CEP164Q9UPV0 1460 aa14.83□□□□□ -0.04
PTPRA-203ENST00000356147 VPS8Q8N3P4 1428 aa14.82□□□□□ -0.04
PTPRA-203ENST00000356147 SYNJ1O43426 1573 aa14.81□□□□□ -0.04
PTPRA-203ENST00000356147 KCNH8Q96L42 1107 aa14.8□□□□□ -0.04
PTPRA-203ENST00000356147 KANK4Q5T7N3 995 aaPredicted RBP14.79□□□□□ -0.04
PTPRA-203ENST00000356147 BCANQ96GW7 911 aa14.77□□□□□ -0.04
PTPRA-203ENST00000356147 DHX57Q6P158 1386 aaKnown RBP14.76□□□□□ -0.05
PTPRA-203ENST00000356147 KIF21BO75037 1637 aa14.72□□□□□ -0.05
PTPRA-203ENST00000356147 UNC13AQ9UPW8 1703 aa14.7□□□□□ -0.06
PTPRA-203ENST00000356147 TSHZ2Q9NRE2 1034 aa14.7□□□□□ -0.06
PTPRA-203ENST00000356147 HIRIP3Q9BW71 556 aaPredicted RBP14.64□□□□□ -0.07
PTPRA-203ENST00000356147 BAZ1BQ9UIG0 1483 aaKnown RBP14.6□□□□□ -0.07
PTPRA-203ENST00000356147 DDX10Q13206 875 aaKnown RBP14.6□□□□□ -0.07
PTPRA-203ENST00000356147 FKBP8Q14318 412 aa14.59□□□□□ -0.07
PTPRA-203ENST00000356147 ARAP1Q96P48 1450 aa14.58□□□□□ -0.07
PTPRA-203ENST00000356147 CLSPNQ9HAW4 1339 aa14.58□□□□□ -0.08
PTPRA-203ENST00000356147 SIN3AQ96ST3 1273 aa14.57□□□□□ -0.08
PTPRA-203ENST00000356147 BICRAQ9NZM4 1560 aa14.55□□□□□ -0.08
PTPRA-203ENST00000356147 ATAD2BQ9ULI0 1458 aa14.54□□□□□ -0.08
PTPRA-203ENST00000356147 ANP32EQ9BTT0 268 aa14.53□□□□□ -0.08
PTPRA-203ENST00000356147 TRIM52Q96A61 297 aa14.53□□□□□ -0.08
PTPRA-203ENST00000356147 CCNB3Q8WWL7 1395 aa14.52□□□□□ -0.08
PTPRA-203ENST00000356147 ATP1B4Q9UN42 357 aaPredicted RBP14.52□□□□□ -0.09
PTPRA-203ENST00000356147 RAB3GAP2Q9H2M9 1393 aa14.51□□□□□ -0.09
PTPRA-203ENST00000356147 FAM50AQ14320 339 aaKnown RBP14.49□□□□□ -0.09
PTPRA-203ENST00000356147 RRBP1Q9P2E9 1410 aaKnown RBP14.47□□□□□ -0.09
PTPRA-203ENST00000356147 P3H3Q8IVL6 736 aa14.47□□□□□ -0.09
PTPRA-203ENST00000356147 PRXQ9BXM0 1461 aa14.47□□□□□ -0.09
PTPRA-203ENST00000356147 TOP2BQ02880 1626 aa14.45□□□□□ -0.1
PTPRA-203ENST00000356147 PEG3Q9GZU2 1588 aa14.45□□□□□ -0.1
PTPRA-203ENST00000356147 ARHGAP35Q9NRY4 1499 aa14.41□□□□□ -0.1
PTPRA-203ENST00000356147 MAPKBP1O60336 1514 aa14.41□□□□□ -0.1
PTPRA-203ENST00000356147 WDR97A6NE52 1622 aa14.4□□□□□ -0.1
PTPRA-203ENST00000356147 NEFLP07196 543 aa14.39□□□□□ -0.11
PTPRA-203ENST00000356147 RBM19Q9Y4C8 960 aaKnown RBP14.39□□□□□ -0.11
PTPRA-203ENST00000356147 IRX6P78412 446 aaPredicted RBP14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms