RNA–Protein interactions for RNA: ENST00000354193.4

SVIP-201, Transcript of small VCP interacting protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SVIP, Length 4,541 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SVIP-201ENST00000354193 UGGT2Q9NYU1 1516 aa15.66■□□□□ 0.1
SVIP-201ENST00000354193 ARHGEF11O15085 1522 aa15.66■□□□□ 0.1
SVIP-201ENST00000354193 KIAA0556O60303 1618 aa15.65■□□□□ 0.1
SVIP-201ENST00000354193 UACAQ9BZF9 1416 aa15.64■□□□□ 0.09
SVIP-201ENST00000354193 MAP3K1Q13233 1512 aa15.64■□□□□ 0.09
SVIP-201ENST00000354193 SAMD9Q5K651 1589 aa15.63■□□□□ 0.09
SVIP-201ENST00000354193 ANKRD30AQ9BXX3 1397 aa15.63■□□□□ 0.09
SVIP-201ENST00000354193 SUPT6HQ7KZ85 1726 aaKnown RBP15.62■□□□□ 0.09
SVIP-201ENST00000354193 MAGI3Q5TCQ9 1506 aa15.62■□□□□ 0.09
SVIP-201ENST00000354193 ATP10BO94823 1461 aa15.62■□□□□ 0.09
SVIP-201ENST00000354193 L3MBTL2Q969R5 705 aa15.62■□□□□ 0.09
SVIP-201ENST00000354193 GGT6Q6P531 493 aa15.6■□□□□ 0.09
SVIP-201ENST00000354193 PPP1R15AO75807 674 aaPredicted RBP15.6■□□□□ 0.09
SVIP-201ENST00000354193 NAIPQ13075 1403 aa15.59■□□□□ 0.09
SVIP-201ENST00000354193 RAPGEF6Q8TEU7 1601 aa15.58■□□□□ 0.08
SVIP-201ENST00000354193 SPAG9O60271 1321 aaKnown RBP15.58■□□□□ 0.08
SVIP-201ENST00000354193 KIF3BO15066 747 aa15.58■□□□□ 0.08
SVIP-201ENST00000354193 DCAF11Q8TEB1 546 aa15.57■□□□□ 0.08
SVIP-201ENST00000354193 MLECQ14165 292 aa15.56■□□□□ 0.08
SVIP-201ENST00000354193 PTPN23Q9H3S7 1636 aa15.55■□□□□ 0.08
SVIP-201ENST00000354193 KIF15Q9NS87 1388 aa15.54■□□□□ 0.08
SVIP-201ENST00000354193 HFM1A2PYH4 1435 aa15.54■□□□□ 0.08
SVIP-201ENST00000354193 DAPK1P53355 1430 aa15.54■□□□□ 0.08
SVIP-201ENST00000354193 ANP32CO43423 234 aa15.54■□□□□ 0.08
SVIP-201ENST00000354193 EIF4G2P78344 907 aaKnown RBP eCLIP15.54■□□□□ 0.08
SVIP-201ENST00000354193 MIA2Q96PC5 1412 aa15.53■□□□□ 0.08
SVIP-201ENST00000354193 ERCC6L2Q5T890 1561 aa15.53■□□□□ 0.08
SVIP-201ENST00000354193 ARHGAP5Q13017 1502 aa15.53■□□□□ 0.08
SVIP-201ENST00000354193 CFAP43Q8NDM7 1665 aa15.53■□□□□ 0.08
SVIP-201ENST00000354193 ABCC5O15440 1437 aa15.53■□□□□ 0.08
SVIP-201ENST00000354193 SENP3-EIF4A1A0A087X0R7 540 aa15.52■□□□□ 0.07
SVIP-201ENST00000354193 GPATCH8Q9UKJ3 1502 aaKnown RBP15.52■□□□□ 0.07
SVIP-201ENST00000354193 TRHP20396 242 aaPredicted RBP15.51■□□□□ 0.07
SVIP-201ENST00000354193 ANKRD50Q9ULJ7 1429 aa15.5■□□□□ 0.07
SVIP-201ENST00000354193 FAM69CQ0P6D2 419 aa15.5■□□□□ 0.07
SVIP-201ENST00000354193 CHD1O14646 1710 aa15.49■□□□□ 0.07
SVIP-201ENST00000354193 CAMSAP2Q08AD1 1489 aa15.49■□□□□ 0.07
SVIP-201ENST00000354193 RAPGEF3O95398 923 aa15.48■□□□□ 0.07
SVIP-201ENST00000354193 HSPA5P11021 654 aaKnown RBP15.48■□□□□ 0.07
SVIP-201ENST00000354193 C9orf84Q5VXU9 1444 aa15.47■□□□□ 0.07
SVIP-201ENST00000354193 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.47■□□□□ 0.07
SVIP-201ENST00000354193 CARD11Q9BXL7 1154 aa15.47■□□□□ 0.07
SVIP-201ENST00000354193 RSPH4AQ5TD94 716 aa15.46■□□□□ 0.07
SVIP-201ENST00000354193 KIF14Q15058 1648 aa15.44■□□□□ 0.06
SVIP-201ENST00000354193 ARID4BQ4LE39 1312 aaPredicted RBP15.44■□□□□ 0.06
SVIP-201ENST00000354193 STAG3Q9UJ98 1225 aa15.44■□□□□ 0.06
SVIP-201ENST00000354193 NUTM2DQ5VT03 806 aaPredicted RBP15.43■□□□□ 0.06
SVIP-201ENST00000354193 ESF1Q9H501 851 aaKnown RBP15.43■□□□□ 0.06
SVIP-201ENST00000354193 TIMELESSQ9UNS1 1208 aa15.42■□□□□ 0.06
SVIP-201ENST00000354193 SCAPERQ9BY12 1400 aa15.42■□□□□ 0.06
SVIP-201ENST00000354193 NCOA1Q15788 1441 aa15.42■□□□□ 0.06
SVIP-201ENST00000354193 BCANQ96GW7 911 aa15.42■□□□□ 0.06
SVIP-201ENST00000354193 GTF3C3Q9Y5Q9 886 aa15.41■□□□□ 0.06
SVIP-201ENST00000354193 NBPF8Q3BBV2 869 aa15.38■□□□□ 0.05
SVIP-201ENST00000354193 MAPKBP1O60336 1514 aa15.38■□□□□ 0.05
SVIP-201ENST00000354193 ACIN1Q9UKV3 1341 aaKnown RBP15.38■□□□□ 0.05
SVIP-201ENST00000354193 LRRIQ1Q96JM4 1722 aa15.37■□□□□ 0.05
SVIP-201ENST00000354193 FAM9BQ8IZU0 186 aa15.37■□□□□ 0.05
SVIP-201ENST00000354193 AKNAQ7Z591 1439 aa15.36■□□□□ 0.05
SVIP-201ENST00000354193 WASHC2CQ9Y4E1 1318 aa15.35■□□□□ 0.05
SVIP-201ENST00000354193 ASXL2Q76L83 1435 aa15.34■□□□□ 0.05
SVIP-201ENST00000354193 ABCA8O94911 1581 aa15.32■□□□□ 0.04
SVIP-201ENST00000354193 ROCK1Q13464 1354 aa15.32■□□□□ 0.04
SVIP-201ENST00000354193 KANK1Q14678 1352 aa15.32■□□□□ 0.04
SVIP-201ENST00000354193 ABCC2Q92887 1545 aa15.32■□□□□ 0.04
SVIP-201ENST00000354193 CCDC141Q6ZP82 1450 aa15.31■□□□□ 0.04
SVIP-201ENST00000354193 SALL2Q9Y467 1007 aaPredicted RBP15.31■□□□□ 0.04
SVIP-201ENST00000354193 SYCP2Q9BX26 1530 aa15.31■□□□□ 0.04
SVIP-201ENST00000354193 TCOF1Q13428 1488 aaKnown RBP15.3■□□□□ 0.04
SVIP-201ENST00000354193 CCDC144AA2RUR9 1427 aa15.3■□□□□ 0.04
SVIP-201ENST00000354193 TRAPPC8Q9Y2L5 1435 aa15.3■□□□□ 0.04
SVIP-201ENST00000354193 PLEKHH2Q8IVE3 1493 aa15.3■□□□□ 0.04
SVIP-201ENST00000354193 CD109Q6YHK3 1445 aa15.3■□□□□ 0.04
SVIP-201ENST00000354193 SAFB2Q14151 953 aaKnown RBP eCLIP15.3■□□□□ 0.04
SVIP-201ENST00000354193 ST20-MTHFSA0A0A6YYL1 179 aa15.29■□□□□ 0.04
SVIP-201ENST00000354193 HNRNPUQ00839 825 aaKnown RBP eCLIP15.29■□□□□ 0.04
SVIP-201ENST00000354193 KDM6BO15054 1643 aa15.28■□□□□ 0.04
SVIP-201ENST00000354193 MRS2Q9HD23 443 aa15.27■□□□□ 0.04
SVIP-201ENST00000354193 ANKRD30BQ9BXX2 1392 aa15.27■□□□□ 0.04
SVIP-201ENST00000354193 FANCAO15360 1455 aa15.27■□□□□ 0.04
SVIP-201ENST00000354193 ROCK2O75116 1388 aaKnown RBP15.27■□□□□ 0.03
SVIP-201ENST00000354193 NBPF1Q3BBV0 1214 aa15.27■□□□□ 0.03
SVIP-201ENST00000354193 PLCH2O75038 1416 aa15.26■□□□□ 0.03
SVIP-201ENST00000354193 KIAA1107Q9UPP5 1409 aa15.26■□□□□ 0.03
SVIP-201ENST00000354193 SCAF1Q9H7N4 1312 aaKnown RBP15.25■□□□□ 0.03
SVIP-201ENST00000354193 ADGRL1O94910 1474 aa15.25■□□□□ 0.03
SVIP-201ENST00000354193 ABCC10Q5T3U5 1492 aa15.24■□□□□ 0.03
SVIP-201ENST00000354193 WDR7Q9Y4E6 1490 aa15.24■□□□□ 0.03
SVIP-201ENST00000354193 STK26Q9P289 416 aa15.23■□□□□ 0.03
SVIP-201ENST00000354193 TMC1Q8TDI8 760 aa15.22■□□□□ 0.03
SVIP-201ENST00000354193 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.21■□□□□ 0.03
SVIP-201ENST00000354193 C11orf95C9JLR9 678 aaPredicted RBP15.21■□□□□ 0.03
SVIP-201ENST00000354193 NEFLP07196 543 aa15.21■□□□□ 0.03
SVIP-201ENST00000354193 WASHC2AQ641Q2 1341 aa15.21■□□□□ 0.03
SVIP-201ENST00000354193 ITSN2Q9NZM3 1697 aa15.2■□□□□ 0.02
SVIP-201ENST00000354193 CC2D1BQ5T0F9 858 aaKnown RBP15.2■□□□□ 0.02
SVIP-201ENST00000354193 USP47Q96K76 1375 aa15.19■□□□□ 0.02
SVIP-201ENST00000354193 DNMT1P26358 1616 aaKnown RBP15.19■□□□□ 0.02
SVIP-201ENST00000354193 TTC37Q6PGP7 1564 aa15.19■□□□□ 0.02
SVIP-201ENST00000354193 TRAK1Q9UPV9 953 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms