RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 SPATA31E1Q6ZUB1 1445 aa9.18□□□□□ -0.94
VPS39-202ENST00000348544 GCC2Q8IWJ2 1684 aa9.18□□□□□ -0.94
VPS39-202ENST00000348544 NBPF8Q3BBV2 869 aa9.18□□□□□ -0.94
VPS39-202ENST00000348544 RRP7BPQ9NSQ0 103 aa9.18□□□□□ -0.94
VPS39-202ENST00000348544 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.18□□□□□ -0.94
VPS39-202ENST00000348544 POLR1AO95602 1720 aaPredicted RBP9.17□□□□□ -0.94
VPS39-202ENST00000348544 KCNA4P22459 653 aa9.17□□□□□ -0.94
VPS39-202ENST00000348544 SENP3-EIF4A1A0A087X0R7 540 aa9.17□□□□□ -0.94
VPS39-202ENST00000348544 LAS1LQ9Y4W2 734 aaKnown RBP9.17□□□□□ -0.94
VPS39-202ENST00000348544 DHX29Q7Z478 1369 aaKnown RBP9.16□□□□□ -0.94
VPS39-202ENST00000348544 WASHC2CQ9Y4E1 1318 aa9.16□□□□□ -0.94
VPS39-202ENST00000348544 NPM2Q86SE8 214 aaKnown RBP9.16□□□□□ -0.94
VPS39-202ENST00000348544 NEFMP07197 916 aa9.15□□□□□ -0.94
VPS39-202ENST00000348544 CHIC2Q9UKJ5 165 aa9.15□□□□□ -0.95
VPS39-202ENST00000348544 TEX14Q8IWB6 1497 aa9.15□□□□□ -0.95
VPS39-202ENST00000348544 CTTNBP2Q8WZ74 1663 aa9.14□□□□□ -0.95
VPS39-202ENST00000348544 SUPT6HQ7KZ85 1726 aaKnown RBP9.14□□□□□ -0.95
VPS39-202ENST00000348544 UGGT2Q9NYU1 1516 aa9.14□□□□□ -0.95
VPS39-202ENST00000348544 MPHOSPH9Q99550 1183 aa9.14□□□□□ -0.95
VPS39-202ENST00000348544 GRIN2BQ13224 1484 aa9.13□□□□□ -0.95
VPS39-202ENST00000348544 ARHGEF11O15085 1522 aa9.13□□□□□ -0.95
VPS39-202ENST00000348544 CNGB1Q14028 1251 aaPredicted RBP9.13□□□□□ -0.95
VPS39-202ENST00000348544 USP35Q9P2H5 1018 aa9.13□□□□□ -0.95
VPS39-202ENST00000348544 MAGI3Q5TCQ9 1506 aa9.13□□□□□ -0.95
VPS39-202ENST00000348544 RPRD2Q5VT52 1461 aaKnown RBP9.12□□□□□ -0.95
VPS39-202ENST00000348544 EHBP1L1Q8N3D4 1523 aa9.12□□□□□ -0.95
VPS39-202ENST00000348544 PDE4AP27815 886 aa9.12□□□□□ -0.95
VPS39-202ENST00000348544 TCOF1Q13428 1488 aaKnown RBP9.12□□□□□ -0.95
VPS39-202ENST00000348544 ANKRD30BQ9BXX2 1392 aa9.11□□□□□ -0.95
VPS39-202ENST00000348544 EXOC6Q8TAG9 804 aa9.11□□□□□ -0.95
VPS39-202ENST00000348544 BRPF3Q9ULD4 1205 aa9.11□□□□□ -0.95
VPS39-202ENST00000348544 BCORL1Q5H9F3 1711 aa9.11□□□□□ -0.95
VPS39-202ENST00000348544 TCERG1O14776 1098 aaKnown RBP9.1□□□□□ -0.95
VPS39-202ENST00000348544 PNISRQ8TF01 805 aaKnown RBP9.1□□□□□ -0.95
VPS39-202ENST00000348544 BACH2Q9BYV9 841 aa9.1□□□□□ -0.95
VPS39-202ENST00000348544 SAMD9Q5K651 1589 aa9.1□□□□□ -0.95
VPS39-202ENST00000348544 RAD54L2Q9Y4B4 1467 aa9.1□□□□□ -0.95
VPS39-202ENST00000348544 THOC2Q8NI27 1593 aaKnown RBP9.09□□□□□ -0.95
VPS39-202ENST00000348544 RRP1P56182 461 aaKnown RBP9.09□□□□□ -0.95
VPS39-202ENST00000348544 UBE2Q2Q8WVN8 375 aa9.09□□□□□ -0.95
VPS39-202ENST00000348544 CC2D2AQ9P2K1 1620 aa9.09□□□□□ -0.95
VPS39-202ENST00000348544 CADPSQ9ULU8 1353 aa9.08□□□□□ -0.96
VPS39-202ENST00000348544 ABCA10Q8WWZ4 1543 aa9.08□□□□□ -0.96
VPS39-202ENST00000348544 CUL7Q14999 1698 aa9.08□□□□□ -0.96
VPS39-202ENST00000348544 MIA2Q96PC5 1412 aa9.08□□□□□ -0.96
VPS39-202ENST00000348544 PPM1GO15355 546 aaPredicted RBP9.08□□□□□ -0.96
VPS39-202ENST00000348544 LRPPRCP42704 1394 aaKnown RBP9.06□□□□□ -0.96
VPS39-202ENST00000348544 MS4A1P11836 297 aa9.06□□□□□ -0.96
VPS39-202ENST00000348544 GSE1Q14687 1217 aa9.06□□□□□ -0.96
VPS39-202ENST00000348544 SKAP1Q86WV1 359 aa9.06□□□□□ -0.96
VPS39-202ENST00000348544 MBD5Q9P267 1494 aa9.05□□□□□ -0.96
VPS39-202ENST00000348544 POLR3GLQ9BT43 218 aa9.05□□□□□ -0.96
VPS39-202ENST00000348544 POLA1P09884 1462 aaPredicted RBP9.05□□□□□ -0.96
VPS39-202ENST00000348544 USP47Q96K76 1375 aa9.04□□□□□ -0.96
VPS39-202ENST00000348544 TMC1Q8TDI8 760 aa9.04□□□□□ -0.96
VPS39-202ENST00000348544 RCAN3Q9UKA8 241 aa9.04□□□□□ -0.96
VPS39-202ENST00000348544 KDM5CP41229 1560 aa9.03□□□□□ -0.96
VPS39-202ENST00000348544 NFKBIBQ15653 356 aa9.03□□□□□ -0.96
VPS39-202ENST00000348544 FRAT1Q92837 279 aaPredicted RBP9.03□□□□□ -0.96
VPS39-202ENST00000348544 DNMBPQ6XZF7 1577 aa9.02□□□□□ -0.96
VPS39-202ENST00000348544 FANCD2Q9BXW9 1451 aa9.01□□□□□ -0.97
VPS39-202ENST00000348544 SLC4A3P48751 1232 aa9.01□□□□□ -0.97
VPS39-202ENST00000348544 TOPBP1Q92547 1522 aa9.01□□□□□ -0.97
VPS39-202ENST00000348544 SLC4A1APQ9BWU0 796 aaKnown RBP9□□□□□ -0.97
VPS39-202ENST00000348544 BRD4O60885 1362 aaPredicted RBP9□□□□□ -0.97
VPS39-202ENST00000348544 KIF14Q15058 1648 aa9□□□□□ -0.97
VPS39-202ENST00000348544 DDRGK1Q96HY6 314 aa9□□□□□ -0.97
VPS39-202ENST00000348544 ARID4BQ4LE39 1312 aaPredicted RBP9□□□□□ -0.97
VPS39-202ENST00000348544 ROCK1Q13464 1354 aa9□□□□□ -0.97
VPS39-202ENST00000348544 DAPK1P53355 1430 aa9□□□□□ -0.97
VPS39-202ENST00000348544 PZPP20742 1482 aa9□□□□□ -0.97
VPS39-202ENST00000348544 KIF21AQ7Z4S6 1674 aa9□□□□□ -0.97
VPS39-202ENST00000348544 KIF15Q9NS87 1388 aa8.99□□□□□ -0.97
VPS39-202ENST00000348544 CDK13Q14004 1512 aaKnown RBP8.99□□□□□ -0.97
VPS39-202ENST00000348544 MYBBP1AQ9BQG0 1328 aaKnown RBP8.99□□□□□ -0.97
VPS39-202ENST00000348544 PLIN1O60240 522 aa8.99□□□□□ -0.97
VPS39-202ENST00000348544 EIF5BO60841 1220 aaKnown RBP8.99□□□□□ -0.97
VPS39-202ENST00000348544 ZNF326Q5BKZ1 582 aaKnown RBP8.99□□□□□ -0.97
VPS39-202ENST00000348544 EPRSP07814 1512 aaKnown RBP8.99□□□□□ -0.97
VPS39-202ENST00000348544 ABCC5O15440 1437 aa8.99□□□□□ -0.97
VPS39-202ENST00000348544 CDCA7LQ96GN5 454 aa8.98□□□□□ -0.97
VPS39-202ENST00000348544 NESP48681 1621 aa8.98□□□□□ -0.97
VPS39-202ENST00000348544 ROCK2O75116 1388 aaKnown RBP8.98□□□□□ -0.97
VPS39-202ENST00000348544 DNMT1P26358 1616 aaKnown RBP8.98□□□□□ -0.97
VPS39-202ENST00000348544 MAPK8IP2Q13387 824 aaPredicted RBP8.97□□□□□ -0.97
VPS39-202ENST00000348544 CRBNQ96SW2 442 aa8.97□□□□□ -0.97
VPS39-202ENST00000348544 E9PCH4 1651 aa8.97□□□□□ -0.97
VPS39-202ENST00000348544 DCAF11Q8TEB1 546 aa8.97□□□□□ -0.97
VPS39-202ENST00000348544 ZNF644Q9H582 1327 aaPredicted RBP8.96□□□□□ -0.98
VPS39-202ENST00000348544 PDE3BQ13370 1112 aa8.96□□□□□ -0.98
VPS39-202ENST00000348544 RALGAPBQ86X10 1494 aa8.95□□□□□ -0.98
VPS39-202ENST00000348544 FRAT2O75474 233 aaPredicted RBP8.95□□□□□ -0.98
VPS39-202ENST00000348544 RALBP1Q15311 655 aa8.95□□□□□ -0.98
VPS39-202ENST00000348544 KDM2BQ8NHM5 1336 aa8.95□□□□□ -0.98
VPS39-202ENST00000348544 KTN1Q86UP2 1357 aaKnown RBP8.95□□□□□ -0.98
VPS39-202ENST00000348544 LAMC3Q9Y6N6 1575 aa8.94□□□□□ -0.98
VPS39-202ENST00000348544 KIAA1107Q9UPP5 1409 aa8.94□□□□□ -0.98
VPS39-202ENST00000348544 ARID3CA6NKF2 412 aa8.94□□□□□ -0.98
VPS39-202ENST00000348544 NCBP3Q53F19 620 aaKnown RBP8.94□□□□□ -0.98
VPS39-202ENST00000348544 C20orf194Q5TEA3 1177 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms