RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 NUTM2FA1L443 756 aa21.84■■□□□ 1.09
SMARCA4-201ENST00000344626 TIMELESSQ9UNS1 1208 aa21.81■■□□□ 1.08
SMARCA4-201ENST00000344626 SNAPC4Q5SXM2 1469 aa21.8■■□□□ 1.08
SMARCA4-201ENST00000344626 POLA1P09884 1462 aaPredicted RBP21.79■■□□□ 1.08
SMARCA4-201ENST00000344626 TMF1P82094 1093 aa21.76■■□□□ 1.07
SMARCA4-201ENST00000344626 AFAP1Q8N556 730 aa21.76■■□□□ 1.07
SMARCA4-201ENST00000344626 NPHP1O15259 732 aa21.75■■□□□ 1.07
SMARCA4-201ENST00000344626 CSB-PGBD3P0DP91 1061 aa21.74■■□□□ 1.07
SMARCA4-201ENST00000344626 MPHOSPH9Q99550 1183 aa21.74■■□□□ 1.07
SMARCA4-201ENST00000344626 NUDCQ9Y266 331 aa21.73■■□□□ 1.07
SMARCA4-201ENST00000344626 NGDNQ8NEJ9 315 aaKnown RBP21.7■■□□□ 1.06
SMARCA4-201ENST00000344626 RTL5Q5HYW3 569 aaPredicted RBP21.69■■□□□ 1.06
SMARCA4-201ENST00000344626 GTF3C3Q9Y5Q9 886 aa21.69■■□□□ 1.06
SMARCA4-201ENST00000344626 LAMC3Q9Y6N6 1575 aa21.68■■□□□ 1.06
SMARCA4-201ENST00000344626 NEUROD2Q15784 382 aa21.68■■□□□ 1.06
SMARCA4-201ENST00000344626 U2SURPO15042 1029 aaKnown RBP21.67■■□□□ 1.06
SMARCA4-201ENST00000344626 RAPGEF3O95398 923 aa21.67■■□□□ 1.06
SMARCA4-201ENST00000344626 SENP3-EIF4A1A0A087X0R7 540 aa21.67■■□□□ 1.06
SMARCA4-201ENST00000344626 ZNF644Q9H582 1327 aaPredicted RBP21.65■■□□□ 1.06
SMARCA4-201ENST00000344626 HDGFL2Q7Z4V5 671 aaPredicted RBP21.64■■□□□ 1.05
SMARCA4-201ENST00000344626 MAPK8IP3Q9UPT6 1336 aa21.63■■□□□ 1.05
SMARCA4-201ENST00000344626 CC2D1BQ5T0F9 858 aaKnown RBP21.61■■□□□ 1.05
SMARCA4-201ENST00000344626 PNNQ9H307 717 aaKnown RBP21.61■■□□□ 1.05
SMARCA4-201ENST00000344626 LAS1LQ9Y4W2 734 aaKnown RBP21.61■■□□□ 1.05
SMARCA4-201ENST00000344626 SYNJ2O15056 1496 aa21.61■■□□□ 1.05
SMARCA4-201ENST00000344626 MYH16Q9H6N6 1097 aa21.61■■□□□ 1.05
SMARCA4-201ENST00000344626 TRAK1Q9UPV9 953 aa21.6■■□□□ 1.05
SMARCA4-201ENST00000344626 RAB3GAP2Q9H2M9 1393 aa21.59■■□□□ 1.05
SMARCA4-201ENST00000344626 VGFO15240 615 aaPredicted RBP21.57■■□□□ 1.04
SMARCA4-201ENST00000344626 PRDM2Q13029 1718 aa21.57■■□□□ 1.04
SMARCA4-201ENST00000344626 DNMBPQ6XZF7 1577 aa21.56■■□□□ 1.04
SMARCA4-201ENST00000344626 EIF3AQ14152 1382 aaKnown RBP21.55■■□□□ 1.04
SMARCA4-201ENST00000344626 UPF2Q9HAU5 1272 aaKnown RBP21.54■■□□□ 1.04
SMARCA4-201ENST00000344626 CUX1P39880 1505 aa21.54■■□□□ 1.04
SMARCA4-201ENST00000344626 MORC1Q86VD1 984 aa21.53■■□□□ 1.04
SMARCA4-201ENST00000344626 ROCK2O75116 1388 aaKnown RBP21.52■■□□□ 1.03
SMARCA4-201ENST00000344626 FKBP8Q14318 412 aa21.51■■□□□ 1.03
SMARCA4-201ENST00000344626 MEX3CQ5U5Q3 659 aaKnown RBP21.51■■□□□ 1.03
SMARCA4-201ENST00000344626 ZNF608Q9ULD9 1512 aaPredicted RBP21.48■■□□□ 1.03
SMARCA4-201ENST00000344626 MIER1Q8N108 512 aa21.47■■□□□ 1.03
SMARCA4-201ENST00000344626 UACAQ9BZF9 1416 aa21.47■■□□□ 1.03
SMARCA4-201ENST00000344626 ATF3P18847 181 aa21.47■■□□□ 1.03
SMARCA4-201ENST00000344626 MYOM3Q5VTT5 1437 aa21.47■■□□□ 1.03
SMARCA4-201ENST00000344626 TOP2BQ02880 1626 aa21.46■■□□□ 1.03
SMARCA4-201ENST00000344626 ANP32AP39687 249 aaKnown RBP21.46■■□□□ 1.03
SMARCA4-201ENST00000344626 CCDC136Q96JN2 1154 aa21.46■■□□□ 1.03
SMARCA4-201ENST00000344626 SYNJ1O43426 1573 aa21.45■■□□□ 1.02
SMARCA4-201ENST00000344626 LTV1Q96GA3 475 aaPredicted RBP21.45■■□□□ 1.02
SMARCA4-201ENST00000344626 TXNDC2Q86VQ3 553 aa21.45■■□□□ 1.02
SMARCA4-201ENST00000344626 ERICH3Q5RHP9 1530 aa21.45■■□□□ 1.02
SMARCA4-201ENST00000344626 ARHGAP5Q13017 1502 aa21.45■■□□□ 1.02
SMARCA4-201ENST00000344626 SCAPERQ9BY12 1400 aa21.44■■□□□ 1.02
SMARCA4-201ENST00000344626 PHF23Q9BUL5 403 aaPredicted RBP21.44■■□□□ 1.02
SMARCA4-201ENST00000344626 KIF15Q9NS87 1388 aa21.44■■□□□ 1.02
SMARCA4-201ENST00000344626 TERF2IPQ9NYB0 399 aa21.43■■□□□ 1.02
SMARCA4-201ENST00000344626 ZNF330Q9Y3S2 320 aaPredicted RBP21.43■■□□□ 1.02
SMARCA4-201ENST00000344626 CCDC144AA2RUR9 1427 aa21.43■■□□□ 1.02
SMARCA4-201ENST00000344626 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.43■■□□□ 1.02
SMARCA4-201ENST00000344626 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.42■■□□□ 1.023e-7■■■■□ 26.2
SMARCA4-201ENST00000344626 L3MBTL2Q969R5 705 aa21.42■■□□□ 1.02
SMARCA4-201ENST00000344626 MINK1Q8N4C8 1332 aaPredicted RBP21.41■■□□□ 1.02
SMARCA4-201ENST00000344626 HSPA5P11021 654 aaKnown RBP21.41■■□□□ 1.02
SMARCA4-201ENST00000344626 URB2Q14146 1524 aaKnown RBP21.41■■□□□ 1.02
SMARCA4-201ENST00000344626 KIAA0586Q9BVV6 1533 aa21.41■■□□□ 1.02
SMARCA4-201ENST00000344626 CASKIN1Q8WXD9 1431 aa21.41■■□□□ 1.02
SMARCA4-201ENST00000344626 EVA1CP58658 441 aa21.4■■□□□ 1.02
SMARCA4-201ENST00000344626 PROSER2Q86WR7 435 aaPredicted RBP21.4■■□□□ 1.02
SMARCA4-201ENST00000344626 THEMISQ8N1K5 641 aaPredicted RBP21.39■■□□□ 1.01
SMARCA4-201ENST00000344626 AMPHP49418 695 aa21.39■■□□□ 1.01
SMARCA4-201ENST00000344626 HSP90AA1P07900 732 aaKnown RBP21.38■■□□□ 1.01
SMARCA4-201ENST00000344626 RTF1Q92541 710 aaKnown RBP21.37■■□□□ 1.01
SMARCA4-201ENST00000344626 KIF21BO75037 1637 aa21.37■■□□□ 1.01
SMARCA4-201ENST00000344626 PSME1Q06323 249 aa21.37■■□□□ 1.01
SMARCA4-201ENST00000344626 POGZQ7Z3K3 1410 aa21.36■■□□□ 1.01
SMARCA4-201ENST00000344626 EFCAB5A4FU69 1503 aa21.35■■□□□ 1.01
SMARCA4-201ENST00000344626 MAGI1Q96QZ7 1491 aaPredicted RBP21.35■■□□□ 1.01
SMARCA4-201ENST00000344626 CD109Q6YHK3 1445 aa21.35■■□□□ 1.01
SMARCA4-201ENST00000344626 ABCA10Q8WWZ4 1543 aa21.34■■□□□ 1.01
SMARCA4-201ENST00000344626 FTSJ3Q8IY81 847 aaKnown RBP21.32■■□□□ 1
SMARCA4-201ENST00000344626 KTN1Q86UP2 1357 aaKnown RBP21.32■■□□□ 1
SMARCA4-201ENST00000344626 PIP4K2BP78356 416 aa21.32■■□□□ 1
SMARCA4-201ENST00000344626 CHMP4BQ9H444 224 aaKnown RBP21.32■■□□□ 1
SMARCA4-201ENST00000344626 GRIN2AQ12879 1464 aa21.31■■□□□ 1
SMARCA4-201ENST00000344626 FYCO1Q9BQS8 1478 aa21.31■■□□□ 1
SMARCA4-201ENST00000344626 ANKLE2Q86XL3 938 aa21.3■■□□□ 1
SMARCA4-201ENST00000344626 UNC13AQ9UPW8 1703 aa21.3■■□□□ 1
SMARCA4-201ENST00000344626 FGD6Q6ZV73 1430 aa21.29■■□□□ 1
SMARCA4-201ENST00000344626 U2AF1L5P0DN76 240 aaPredicted RBP21.28■■□□□ 1
SMARCA4-201ENST00000344626 MS4A1P11836 297 aa21.28■■□□□ 1
SMARCA4-201ENST00000344626 U2AF1Q01081 240 aaKnown RBP eCLIP21.28■■□□□ 1
SMARCA4-201ENST00000344626 PEG3Q9GZU2 1588 aa21.28■■□□□ 1
SMARCA4-201ENST00000344626 SLC26A8Q96RN1 970 aa21.26■□□□□ 0.99
SMARCA4-201ENST00000344626 LRRC9Q6ZRR7 1453 aa21.25■□□□□ 0.99
SMARCA4-201ENST00000344626 PRXQ9BXM0 1461 aa21.25■□□□□ 0.99
SMARCA4-201ENST00000344626 PLEKHH2Q8IVE3 1493 aa21.24■□□□□ 0.99
SMARCA4-201ENST00000344626 CEBPAP49715 358 aaPredicted RBP21.24■□□□□ 0.99
SMARCA4-201ENST00000344626 ANKRD50Q9ULJ7 1429 aa21.23■□□□□ 0.99
SMARCA4-201ENST00000344626 NCOA2Q15596 1464 aa21.23■□□□□ 0.99
SMARCA4-201ENST00000344626 TROQ12816 1431 aaPredicted RBP21.23■□□□□ 0.99
SMARCA4-201ENST00000344626 RALBP1Q15311 655 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms