RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 DCAF8L2P0C7V8 631 aa30.62■■■□□ 2.49
SMARCA4-201ENST00000344626 NISCHQ9Y2I1 1504 aa29.82■■■□□ 2.36
SMARCA4-201ENST00000344626 SHROOM4Q9ULL8 1493 aa27.95■■■□□ 2.06
SMARCA4-201ENST00000344626 SUPT5HO00267 1087 aaKnown RBP27.89■■■□□ 2.06
SMARCA4-201ENST00000344626 EHMT2Q96KQ7 1210 aa26.9■■□□□ 1.9
SMARCA4-201ENST00000344626 ABCC9O60706 1549 aa26.73■■□□□ 1.87
SMARCA4-201ENST00000344626 PABPN1Q86U42 306 aaKnown RBP eCLIP26.35■■□□□ 1.81
SMARCA4-201ENST00000344626 FAM9AQ8IZU1 332 aaPredicted RBP26.35■■□□□ 1.81
SMARCA4-201ENST00000344626 RANGAP1P46060 587 aaPredicted RBP26.12■■□□□ 1.77
SMARCA4-201ENST00000344626 APLP2Q06481 763 aa26.06■■□□□ 1.76
SMARCA4-201ENST00000344626 ATP1B4Q9UN42 357 aaPredicted RBP25.88■■□□□ 1.73
SMARCA4-201ENST00000344626 TRIM41Q8WV44 630 aa25.86■■□□□ 1.73
SMARCA4-201ENST00000344626 TTBK1Q5TCY1 1321 aaPredicted RBP25.7■■□□□ 1.7
SMARCA4-201ENST00000344626 UBTFP17480 764 aaKnown RBP25.61■■□□□ 1.69
SMARCA4-201ENST00000344626 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.33■■□□□ 1.64
SMARCA4-201ENST00000344626 HNRNPUL2Q1KMD3 747 aaKnown RBP25.33■■□□□ 1.64
SMARCA4-201ENST00000344626 MYT1LQ9UL68 1186 aa25.22■■□□□ 1.63
SMARCA4-201ENST00000344626 FBLN2P98095 1184 aa25.16■■□□□ 1.62
SMARCA4-201ENST00000344626 CCDC180Q9P1Z9 1646 aa24.97■■□□□ 1.59
SMARCA4-201ENST00000344626 SCRIBQ14160 1630 aa24.93■■□□□ 1.58
SMARCA4-201ENST00000344626 PPARGC1BQ86YN6 1023 aaKnown RBP24.73■■□□□ 1.55
SMARCA4-201ENST00000344626 PCGF6Q9BYE7 350 aa24.71■■□□□ 1.55
SMARCA4-201ENST00000344626 CHIC1Q5VXU3 224 aa24.66■■□□□ 1.54
SMARCA4-201ENST00000344626 ZCCHC6Q5VYS8 1495 aaKnown RBP24.64■■□□□ 1.54
SMARCA4-201ENST00000344626 RB1CC1Q8TDY2 1594 aa24.64■■□□□ 1.53
SMARCA4-201ENST00000344626 ITGAEP38570 1179 aa24.62■■□□□ 1.53
SMARCA4-201ENST00000344626 CCER1Q8TC90 406 aaPredicted RBP24.52■■□□□ 1.52
SMARCA4-201ENST00000344626 ZEB1P37275 1124 aaPredicted RBP24.47■■□□□ 1.51
SMARCA4-201ENST00000344626 LOC105371045A0A1W2PR82 267 aa24.43■■□□□ 1.5
SMARCA4-201ENST00000344626 ARID3CA6NKF2 412 aa24.37■■□□□ 1.49
SMARCA4-201ENST00000344626 PELP1Q8IZL8 1130 aaKnown RBP24.3■■□□□ 1.48
SMARCA4-201ENST00000344626 P3H3Q8IVL6 736 aa24.29■■□□□ 1.48
SMARCA4-201ENST00000344626 NACADO15069 1562 aa24.28■■□□□ 1.48
SMARCA4-201ENST00000344626 NPM1P06748 294 aaKnown RBP eCLIP24.24■■□□□ 1.47
SMARCA4-201ENST00000344626 CHMP7Q8WUX9 453 aaPredicted RBP24.13■■□□□ 1.45
SMARCA4-201ENST00000344626 TRIM26Q12899 539 aaPredicted RBP24.12■■□□□ 1.45
SMARCA4-201ENST00000344626 FAM50AQ14320 339 aaKnown RBP24.09■■□□□ 1.45
SMARCA4-201ENST00000344626 ERCC6Q03468 1493 aa24.04■■□□□ 1.44
SMARCA4-201ENST00000344626 CSRNP3Q8WYN3 585 aa24■■□□□ 1.43
SMARCA4-201ENST00000344626 PLPPR3Q6T4P5 718 aa23.98■■□□□ 1.43
SMARCA4-201ENST00000344626 POLR3GLQ9BT43 218 aa23.97■■□□□ 1.43
SMARCA4-201ENST00000344626 ZNF777Q9ULD5 760 aaPredicted RBP23.93■■□□□ 1.42
SMARCA4-201ENST00000344626 TRIM52Q96A61 297 aa23.89■■□□□ 1.42
SMARCA4-201ENST00000344626 BAZ1BQ9UIG0 1483 aaKnown RBP23.89■■□□□ 1.41
SMARCA4-201ENST00000344626 ESF1Q9H501 851 aaKnown RBP23.89■■□□□ 1.41
SMARCA4-201ENST00000344626 CDK11AQ9UQ88 783 aaPredicted RBP23.87■■□□□ 1.41
SMARCA4-201ENST00000344626 SLC4A1APQ9BWU0 796 aaKnown RBP23.83■■□□□ 1.41
SMARCA4-201ENST00000344626 BCANQ96GW7 911 aa23.81■■□□□ 1.4
SMARCA4-201ENST00000344626 DCAF1Q9Y4B6 1507 aa23.78■■□□□ 1.4
SMARCA4-201ENST00000344626 CENPBP07199 599 aaPredicted RBP23.74■■□□□ 1.39
SMARCA4-201ENST00000344626 CNGB1Q14028 1251 aaPredicted RBP23.72■■□□□ 1.39
SMARCA4-201ENST00000344626 TRHP20396 242 aaPredicted RBP23.66■■□□□ 1.38
SMARCA4-201ENST00000344626 RSF1Q96T23 1441 aaPredicted RBP23.62■■□□□ 1.37
SMARCA4-201ENST00000344626 KCNH8Q96L42 1107 aa23.61■■□□□ 1.37
SMARCA4-201ENST00000344626 CECR2Q9BXF3 1484 aa23.58■■□□□ 1.37
SMARCA4-201ENST00000344626 ZNF326Q5BKZ1 582 aaKnown RBP23.55■■□□□ 1.36
SMARCA4-201ENST00000344626 STAG3Q9UJ98 1225 aa23.51■■□□□ 1.35
SMARCA4-201ENST00000344626 BAZ1AQ9NRL2 1556 aaPredicted RBP23.51■■□□□ 1.35
SMARCA4-201ENST00000344626 CHGAP10645 457 aaKnown RBP23.45■■□□□ 1.34
SMARCA4-201ENST00000344626 NEFLP07196 543 aa23.45■■□□□ 1.34
SMARCA4-201ENST00000344626 NEUROD1Q13562 356 aa23.44■■□□□ 1.34
SMARCA4-201ENST00000344626 PDS5BQ9NTI5 1447 aa23.37■■□□□ 1.33
SMARCA4-201ENST00000344626 ARID4BQ4LE39 1312 aaPredicted RBP23.35■■□□□ 1.33
SMARCA4-201ENST00000344626 PLEKHD1A6NEE1 506 aa23.33■■□□□ 1.33
SMARCA4-201ENST00000344626 WRNQ14191 1432 aaPredicted RBP eCLIP23.32■■□□□ 1.325e-6■■□□□ 12.5
SMARCA4-201ENST00000344626 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.32■■□□□ 1.322e-8■■■□□ 17.8
SMARCA4-201ENST00000344626 MYO15BQ96JP2 1530 aa23.31■■□□□ 1.32
SMARCA4-201ENST00000344626 TSPY4P0CV99 314 aa23.29■■□□□ 1.32
SMARCA4-201ENST00000344626 TSPY10P0CW01 314 aa23.29■■□□□ 1.32
SMARCA4-201ENST00000344626 YTHDC1Q96MU7 727 aaKnown RBP23.28■■□□□ 1.32
SMARCA4-201ENST00000344626 CHIC2Q9UKJ5 165 aa23.25■■□□□ 1.31
SMARCA4-201ENST00000344626 EEA1Q15075 1411 aa23.21■■□□□ 1.31
SMARCA4-201ENST00000344626 HRCP23327 699 aa23.21■■□□□ 1.31
SMARCA4-201ENST00000344626 MTUS2Q5JR59 1369 aa23.2■■□□□ 1.3
SMARCA4-201ENST00000344626 KIF27Q86VH2 1401 aa23.2■■□□□ 1.3
SMARCA4-201ENST00000344626 SMARCA2P51531 1590 aa23.18■■□□□ 1.3
SMARCA4-201ENST00000344626 TDRD9Q8NDG6 1382 aaKnown RBP23.14■■□□□ 1.29
SMARCA4-201ENST00000344626 MROH2BQ7Z745 1585 aa23.12■■□□□ 1.29
SMARCA4-201ENST00000344626 SENP3Q9H4L4 574 aaPredicted RBP23.1■■□□□ 1.29
SMARCA4-201ENST00000344626 CADPSQ9ULU8 1353 aa23.09■■□□□ 1.29
SMARCA4-201ENST00000344626 CUX2O14529 1486 aa23.05■■□□□ 1.28
SMARCA4-201ENST00000344626 ERICH6Q7L0X2 663 aa23.03■■□□□ 1.28
SMARCA4-201ENST00000344626 SOGA1O94964 1423 aa23■■□□□ 1.27
SMARCA4-201ENST00000344626 CLIP1P30622 1438 aa23■■□□□ 1.27
SMARCA4-201ENST00000344626 CYB5RLQ6IPT4 315 aa22.99■■□□□ 1.27
SMARCA4-201ENST00000344626 SLC24A1O60721 1099 aa22.99■■□□□ 1.27
SMARCA4-201ENST00000344626 GOLGA3Q08378 1498 aa22.99■■□□□ 1.27
SMARCA4-201ENST00000344626 ATAD2BQ9ULI0 1458 aa22.97■■□□□ 1.27
SMARCA4-201ENST00000344626 CFDP1Q9UEE9 299 aaPredicted RBP22.96■■□□□ 1.27
SMARCA4-201ENST00000344626 MLECQ14165 292 aa22.95■■□□□ 1.26
SMARCA4-201ENST00000344626 CARMIL1Q5VZK9 1371 aa22.95■■□□□ 1.26
SMARCA4-201ENST00000344626 OSCARQ8IYS5 282 aa22.94■■□□□ 1.26
SMARCA4-201ENST00000344626 CCDC88BA6NC98 1476 aa22.94■■□□□ 1.26
SMARCA4-201ENST00000344626 PPP1R15AO75807 674 aaPredicted RBP22.93■■□□□ 1.26
SMARCA4-201ENST00000344626 EIF4G1Q04637 1599 aaKnown RBP22.92■■□□□ 1.26
SMARCA4-201ENST00000344626 C14orf37Q86TY3 774 aa22.92■■□□□ 1.26
SMARCA4-201ENST00000344626 SCAF1Q9H7N4 1312 aaKnown RBP22.88■■□□□ 1.25
SMARCA4-201ENST00000344626 DNAJC5BQ9UF47 199 aa22.86■■□□□ 1.25
SMARCA4-201ENST00000344626 CEP164Q9UPV0 1460 aa22.86■■□□□ 1.25
SMARCA4-201ENST00000344626 RRP7BPQ9NSQ0 103 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 121.7 ms