RNA–Protein interactions for RNA: ENST00000340437.8

CPSF7-201, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 1 (best) BASIC

Gene CPSF7, Length 3,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-201ENST00000340437 PDS5BQ9NTI5 1447 aa19.6■□□□□ 0.73
CPSF7-201ENST00000340437 PKD2Q13563 968 aa19.58■□□□□ 0.72
CPSF7-201ENST00000340437 NBR1Q14596 966 aa19.58■□□□□ 0.72
CPSF7-201ENST00000340437 LRRIQ1Q96JM4 1722 aa19.57■□□□□ 0.72
CPSF7-201ENST00000340437 UGGT2Q9NYU1 1516 aa19.56■□□□□ 0.72
CPSF7-201ENST00000340437 DENND4BO75064 1496 aaPredicted RBP19.56■□□□□ 0.72
CPSF7-201ENST00000340437 EPRSP07814 1512 aaKnown RBP19.56■□□□□ 0.72
CPSF7-201ENST00000340437 TMC1Q8TDI8 760 aa19.56■□□□□ 0.72
CPSF7-201ENST00000340437 KDM5BQ9UGL1 1544 aa19.56■□□□□ 0.72
CPSF7-201ENST00000340437 CCDC136Q96JN2 1154 aa19.55■□□□□ 0.72
CPSF7-201ENST00000340437 MYT1LQ9UL68 1186 aa19.55■□□□□ 0.72
CPSF7-201ENST00000340437 ZBED9Q6R2W3 1325 aa19.53■□□□□ 0.72
CPSF7-201ENST00000340437 ANKRD30BQ9BXX2 1392 aa19.52■□□□□ 0.72
CPSF7-201ENST00000340437 SAMD9Q5K651 1589 aa19.51■□□□□ 0.71
CPSF7-201ENST00000340437 AKNAQ7Z591 1439 aa19.51■□□□□ 0.71
CPSF7-201ENST00000340437 THOC2Q8NI27 1593 aaKnown RBP19.51■□□□□ 0.71
CPSF7-201ENST00000340437 CARD11Q9BXL7 1154 aa19.5■□□□□ 0.71
CPSF7-201ENST00000340437 NCOA1Q15788 1441 aa19.49■□□□□ 0.71
CPSF7-201ENST00000340437 FANCIQ9NVI1 1328 aa19.49■□□□□ 0.71
CPSF7-201ENST00000340437 NPM2Q86SE8 214 aaKnown RBP19.48■□□□□ 0.71
CPSF7-201ENST00000340437 LAMC3Q9Y6N6 1575 aa19.47■□□□□ 0.71
CPSF7-201ENST00000340437 CHMP7Q8WUX9 453 aaPredicted RBP19.47■□□□□ 0.71
CPSF7-201ENST00000340437 DAPK1P53355 1430 aa19.47■□□□□ 0.71
CPSF7-201ENST00000340437 RGL3Q3MIN7 710 aa19.47■□□□□ 0.71
CPSF7-201ENST00000340437 ABCC5O15440 1437 aa19.46■□□□□ 0.71
CPSF7-201ENST00000340437 DCAF11Q8TEB1 546 aa19.45■□□□□ 0.7
CPSF7-201ENST00000340437 USP47Q96K76 1375 aa19.45■□□□□ 0.7
CPSF7-201ENST00000340437 PRG4Q92954 1404 aaPredicted RBP19.44■□□□□ 0.7
CPSF7-201ENST00000340437 ABCA5Q8WWZ7 1642 aa19.44■□□□□ 0.7
CPSF7-201ENST00000340437 HECW1Q76N89 1606 aa19.43■□□□□ 0.7
CPSF7-201ENST00000340437 MIA2Q96PC5 1412 aa19.43■□□□□ 0.7
CPSF7-201ENST00000340437 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.43■□□□□ 0.72e-8■□□□□ 11
CPSF7-201ENST00000340437 ST20-MTHFSA0A0A6YYL1 179 aa19.42■□□□□ 0.7
CPSF7-201ENST00000340437 TCOF1Q13428 1488 aaKnown RBP19.42■□□□□ 0.7
CPSF7-201ENST00000340437 ERICH6BQ5W0A0 696 aa19.41■□□□□ 0.7
CPSF7-201ENST00000340437 NUDCQ9Y266 331 aa19.41■□□□□ 0.7
CPSF7-201ENST00000340437 RPRD2Q5VT52 1461 aaKnown RBP19.41■□□□□ 0.7
CPSF7-201ENST00000340437 SENP3Q9H4L4 574 aaPredicted RBP19.41■□□□□ 0.7
CPSF7-201ENST00000340437 IQGAP2Q13576 1575 aa19.41■□□□□ 0.7
CPSF7-201ENST00000340437 PAK3O75914 559 aaPredicted RBP19.4■□□□□ 0.7
CPSF7-201ENST00000340437 NUP155O75694 1391 aa19.4■□□□□ 0.7
CPSF7-201ENST00000340437 HNRNPMP52272 730 aaKnown RBP eCLIP19.38■□□□□ 0.69
CPSF7-201ENST00000340437 TSPY4P0CV99 314 aa19.38■□□□□ 0.69
CPSF7-201ENST00000340437 TSPY10P0CW01 314 aa19.38■□□□□ 0.69
CPSF7-201ENST00000340437 ZNF608Q9ULD9 1512 aaPredicted RBP19.38■□□□□ 0.69
CPSF7-201ENST00000340437 ARHGEF11O15085 1522 aa19.37■□□□□ 0.69
CPSF7-201ENST00000340437 NOP58Q9Y2X3 529 aaKnown RBP19.36■□□□□ 0.69
CPSF7-201ENST00000340437 PLEKHD1A6NEE1 506 aa19.36■□□□□ 0.69
CPSF7-201ENST00000340437 KIF21AQ7Z4S6 1674 aa19.34■□□□□ 0.69
CPSF7-201ENST00000340437 ANP32AP39687 249 aaKnown RBP19.34■□□□□ 0.69
CPSF7-201ENST00000340437 CC2D1BQ5T0F9 858 aaKnown RBP19.33■□□□□ 0.69
CPSF7-201ENST00000340437 TEX14Q8IWB6 1497 aa19.33■□□□□ 0.68
CPSF7-201ENST00000340437 DEKP35659 375 aaKnown RBP19.32■□□□□ 0.68
CPSF7-201ENST00000340437 PNISRQ8TF01 805 aaKnown RBP19.32■□□□□ 0.68
CPSF7-201ENST00000340437 GCC2Q8IWJ2 1684 aa19.32■□□□□ 0.68
CPSF7-201ENST00000340437 WDR62O43379 1518 aa19.31■□□□□ 0.68
CPSF7-201ENST00000340437 ROCK1Q13464 1354 aa19.31■□□□□ 0.68
CPSF7-201ENST00000340437 SPATA31E1Q6ZUB1 1445 aa19.3■□□□□ 0.68
CPSF7-201ENST00000340437 EXOC6Q8TAG9 804 aa19.3■□□□□ 0.68
CPSF7-201ENST00000340437 PLB1Q6P1J6 1458 aa19.3■□□□□ 0.68
CPSF7-201ENST00000340437 ANKRD30AQ9BXX3 1397 aa19.29■□□□□ 0.68
CPSF7-201ENST00000340437 DHX29Q7Z478 1369 aaKnown RBP19.29■□□□□ 0.68
CPSF7-201ENST00000340437 NUP153P49790 1475 aaKnown RBP19.29■□□□□ 0.68
CPSF7-201ENST00000340437 ZBTB47Q9UFB7 747 aaPredicted RBP19.28■□□□□ 0.68
CPSF7-201ENST00000340437 JPH4Q96JJ6 628 aa19.28■□□□□ 0.68
CPSF7-201ENST00000340437 PLIN1O60240 522 aa19.27■□□□□ 0.68
CPSF7-201ENST00000340437 KIAA1107Q9UPP5 1409 aa19.26■□□□□ 0.67
CPSF7-201ENST00000340437 TARBP1Q13395 1621 aaKnown RBP19.26■□□□□ 0.67
CPSF7-201ENST00000340437 ANKRD50Q9ULJ7 1429 aa19.26■□□□□ 0.67
CPSF7-201ENST00000340437 PZPP20742 1482 aa19.25■□□□□ 0.67
CPSF7-201ENST00000340437 CAMSAP2Q08AD1 1489 aa19.25■□□□□ 0.67
CPSF7-201ENST00000340437 SKAP1Q86WV1 359 aa19.25■□□□□ 0.67
CPSF7-201ENST00000340437 CDCA7LQ96GN5 454 aa19.25■□□□□ 0.67
CPSF7-201ENST00000340437 SMG6Q86US8 1419 aaKnown RBP19.25■□□□□ 0.67
CPSF7-201ENST00000340437 NBPF1Q3BBV0 1214 aa19.24■□□□□ 0.67
CPSF7-201ENST00000340437 ROCK2O75116 1388 aaKnown RBP19.24■□□□□ 0.67
CPSF7-201ENST00000340437 RTL5Q5HYW3 569 aaPredicted RBP19.23■□□□□ 0.67
CPSF7-201ENST00000340437 RCAN3Q9UKA8 241 aa19.22■□□□□ 0.67
CPSF7-201ENST00000340437 TROQ12816 1431 aaPredicted RBP19.21■□□□□ 0.67
CPSF7-201ENST00000340437 LAS1LQ9Y4W2 734 aaKnown RBP19.21■□□□□ 0.67
CPSF7-201ENST00000340437 DISP1Q96F81 1524 aa19.21■□□□□ 0.67
CPSF7-201ENST00000340437 ADAMTS12P58397 1594 aa19.2■□□□□ 0.66
CPSF7-201ENST00000340437 KIAA0586Q9BVV6 1533 aa19.2■□□□□ 0.66
CPSF7-201ENST00000340437 PBRM1Q86U86 1689 aa19.2■□□□□ 0.66
CPSF7-201ENST00000340437 KIF15Q9NS87 1388 aa19.19■□□□□ 0.66
CPSF7-201ENST00000340437 MYBBP1AQ9BQG0 1328 aaKnown RBP19.19■□□□□ 0.66
CPSF7-201ENST00000340437 GPATCH8Q9UKJ3 1502 aaKnown RBP19.19■□□□□ 0.66
CPSF7-201ENST00000340437 RRP1P56182 461 aaKnown RBP19.18■□□□□ 0.66
CPSF7-201ENST00000340437 IPO9Q96P70 1041 aaKnown RBP19.18■□□□□ 0.66
CPSF7-201ENST00000340437 DNMT1P26358 1616 aaKnown RBP19.18■□□□□ 0.66
CPSF7-201ENST00000340437 MRC2Q9UBG0 1479 aa19.18■□□□□ 0.66
CPSF7-201ENST00000340437 BCORL1Q5H9F3 1711 aa19.15■□□□□ 0.66
CPSF7-201ENST00000340437 RALBP1Q15311 655 aa19.15■□□□□ 0.66
CPSF7-201ENST00000340437 KIAA0556O60303 1618 aa19.13■□□□□ 0.65
CPSF7-201ENST00000340437 RAPGEF6Q8TEU7 1601 aa19.13■□□□□ 0.65
CPSF7-201ENST00000340437 PANK3Q9H999 370 aa19.13■□□□□ 0.65
CPSF7-201ENST00000340437 NLRP13Q86W25 1043 aa19.12■□□□□ 0.65
CPSF7-201ENST00000340437 GRIN2AQ12879 1464 aa19.12■□□□□ 0.65
CPSF7-201ENST00000340437 KTN1Q86UP2 1357 aaKnown RBP19.12■□□□□ 0.65
CPSF7-201ENST00000340437 C9orf84Q5VXU9 1444 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms