RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 IQGAP2Q13576 1575 aa18.67■□□□□ 0.58
SYNE3-201ENST00000334258 PAK3O75914 559 aaPredicted RBP18.67■□□□□ 0.58
SYNE3-201ENST00000334258 EFCAB5A4FU69 1503 aa18.66■□□□□ 0.58
SYNE3-201ENST00000334258 FYCO1Q9BQS8 1478 aa18.66■□□□□ 0.58
SYNE3-201ENST00000334258 ZNF644Q9H582 1327 aaPredicted RBP18.66■□□□□ 0.58
SYNE3-201ENST00000334258 HFM1A2PYH4 1435 aa18.65■□□□□ 0.58
SYNE3-201ENST00000334258 RTL5Q5HYW3 569 aaPredicted RBP18.65■□□□□ 0.58
SYNE3-201ENST00000334258 ANP32AP39687 249 aaKnown RBP18.65■□□□□ 0.58
SYNE3-201ENST00000334258 PTPRKQ15262 1439 aa18.65■□□□□ 0.58
SYNE3-201ENST00000334258 ZBED9Q6R2W3 1325 aa18.64■□□□□ 0.57
SYNE3-201ENST00000334258 POLR3GLQ9BT43 218 aa18.62■□□□□ 0.57
SYNE3-201ENST00000334258 SENP3-EIF4A1A0A087X0R7 540 aa18.62■□□□□ 0.57
SYNE3-201ENST00000334258 C11orf95C9JLR9 678 aaPredicted RBP18.61■□□□□ 0.57
SYNE3-201ENST00000334258 CNTLNQ9NXG0 1405 aa18.61■□□□□ 0.57
SYNE3-201ENST00000334258 L3MBTL2Q969R5 705 aa18.61■□□□□ 0.57
SYNE3-201ENST00000334258 NAIPQ13075 1403 aa18.6■□□□□ 0.57
SYNE3-201ENST00000334258 CFAP43Q8NDM7 1665 aa18.6■□□□□ 0.57
SYNE3-201ENST00000334258 PLB1Q6P1J6 1458 aa18.6■□□□□ 0.57
SYNE3-201ENST00000334258 EIF5BO60841 1220 aaKnown RBP18.6■□□□□ 0.57
SYNE3-201ENST00000334258 FOXD1Q16676 465 aa18.59■□□□□ 0.57
SYNE3-201ENST00000334258 ZBTB47Q9UFB7 747 aaPredicted RBP18.59■□□□□ 0.57
SYNE3-201ENST00000334258 NCOA2Q15596 1464 aa18.59■□□□□ 0.57
SYNE3-201ENST00000334258 SAMD9Q5K651 1589 aa18.59■□□□□ 0.57
SYNE3-201ENST00000334258 MAGI3Q5TCQ9 1506 aa18.59■□□□□ 0.57
SYNE3-201ENST00000334258 KIAA0586Q9BVV6 1533 aa18.58■□□□□ 0.57
SYNE3-201ENST00000334258 SYNJ2O15056 1496 aa18.57■□□□□ 0.56
SYNE3-201ENST00000334258 LRRIQ1Q96JM4 1722 aa18.57■□□□□ 0.56
SYNE3-201ENST00000334258 DISP1Q96F81 1524 aa18.56■□□□□ 0.56
SYNE3-201ENST00000334258 CCDC7Q96M83 1385 aa18.56■□□□□ 0.56
SYNE3-201ENST00000334258 CEP170Q5SW79 1584 aa18.55■□□□□ 0.56
SYNE3-201ENST00000334258 RTN4Q9NQC3 1192 aaKnown RBP18.55■□□□□ 0.56
SYNE3-201ENST00000334258 PTPN23Q9H3S7 1636 aa18.55■□□□□ 0.56
SYNE3-201ENST00000334258 EPRSP07814 1512 aaKnown RBP18.54■□□□□ 0.56
SYNE3-201ENST00000334258 IPO9Q96P70 1041 aaKnown RBP18.54■□□□□ 0.56
SYNE3-201ENST00000334258 MPHOSPH9Q99550 1183 aa18.53■□□□□ 0.56
SYNE3-201ENST00000334258 PRG4Q92954 1404 aaPredicted RBP18.53■□□□□ 0.56
SYNE3-201ENST00000334258 MAGI1Q96QZ7 1491 aaPredicted RBP18.51■□□□□ 0.55
SYNE3-201ENST00000334258 NPM2Q86SE8 214 aaKnown RBP18.51■□□□□ 0.55
SYNE3-201ENST00000334258 AKNAQ7Z591 1439 aa18.51■□□□□ 0.55
SYNE3-201ENST00000334258 MYOM3Q5VTT5 1437 aa18.51■□□□□ 0.55
SYNE3-201ENST00000334258 KDM5BQ9UGL1 1544 aa18.48■□□□□ 0.55
SYNE3-201ENST00000334258 NUDCQ9Y266 331 aa18.48■□□□□ 0.55
SYNE3-201ENST00000334258 KIF7Q2M1P5 1343 aa18.48■□□□□ 0.55
SYNE3-201ENST00000334258 PLEKHG5O94827 1062 aa18.47■□□□□ 0.55
SYNE3-201ENST00000334258 CFDP1Q9UEE9 299 aaPredicted RBP18.47■□□□□ 0.55
SYNE3-201ENST00000334258 NBPF8Q3BBV2 869 aa18.46■□□□□ 0.55
SYNE3-201ENST00000334258 ZNF326Q5BKZ1 582 aaKnown RBP18.46■□□□□ 0.55
SYNE3-201ENST00000334258 NUP153P49790 1475 aaKnown RBP18.46■□□□□ 0.55
SYNE3-201ENST00000334258 NCOA1Q15788 1441 aa18.46■□□□□ 0.55
SYNE3-201ENST00000334258 KIAA0556O60303 1618 aa18.45■□□□□ 0.54
SYNE3-201ENST00000334258 SLC24A1O60721 1099 aa18.45■□□□□ 0.54
SYNE3-201ENST00000334258 UGGT2Q9NYU1 1516 aa18.45■□□□□ 0.54
SYNE3-201ENST00000334258 PLEKHD1A6NEE1 506 aa18.44■□□□□ 0.54
SYNE3-201ENST00000334258 CARMIL2Q6F5E8 1435 aa18.43■□□□□ 0.54
SYNE3-201ENST00000334258 SMG6Q86US8 1419 aaKnown RBP18.41■□□□□ 0.54
SYNE3-201ENST00000334258 IL27Q8NEV9 243 aa18.41■□□□□ 0.54
SYNE3-201ENST00000334258 TMC1Q8TDI8 760 aa18.41■□□□□ 0.54
SYNE3-201ENST00000334258 SLC4A1APQ9BWU0 796 aaKnown RBP18.4■□□□□ 0.54
SYNE3-201ENST00000334258 PTPRGP23470 1445 aa18.4■□□□□ 0.54
SYNE3-201ENST00000334258 HECW1Q76N89 1606 aa18.39■□□□□ 0.53
SYNE3-201ENST00000334258 LAS1LQ9Y4W2 734 aaKnown RBP18.39■□□□□ 0.53
SYNE3-201ENST00000334258 NUP160Q12769 1436 aa18.39■□□□□ 0.53
SYNE3-201ENST00000334258 PKNOX2Q96KN3 472 aa18.38■□□□□ 0.53
SYNE3-201ENST00000334258 HNRNPMP52272 730 aaKnown RBP eCLIP18.36■□□□□ 0.53
SYNE3-201ENST00000334258 SUPT6HQ7KZ85 1726 aaKnown RBP18.36■□□□□ 0.53
SYNE3-201ENST00000334258 EHBP1L1Q8N3D4 1523 aa18.36■□□□□ 0.53
SYNE3-201ENST00000334258 NEFMP07197 916 aa18.35■□□□□ 0.53
SYNE3-201ENST00000334258 ERCC6L2Q5T890 1561 aa18.34■□□□□ 0.53
SYNE3-201ENST00000334258 DENND4BO75064 1496 aaPredicted RBP18.33■□□□□ 0.53
SYNE3-201ENST00000334258 RAPGEF6Q8TEU7 1601 aa18.32■□□□□ 0.52
SYNE3-201ENST00000334258 RNF123Q5XPI4 1314 aa18.31■□□□□ 0.52
SYNE3-201ENST00000334258 EXOC6Q8TAG9 804 aa18.29■□□□□ 0.52
SYNE3-201ENST00000334258 ANKRD30BQ9BXX2 1392 aa18.29■□□□□ 0.52
SYNE3-201ENST00000334258 CHD1O14646 1710 aa18.29■□□□□ 0.52
SYNE3-201ENST00000334258 PNISRQ8TF01 805 aaKnown RBP18.28■□□□□ 0.52
SYNE3-201ENST00000334258 ATP10BO94823 1461 aa18.28■□□□□ 0.52
SYNE3-201ENST00000334258 PDE4AP27815 886 aa18.27■□□□□ 0.52
SYNE3-201ENST00000334258 TCERG1O14776 1098 aaKnown RBP18.26■□□□□ 0.51
SYNE3-201ENST00000334258 ARHGEF11O15085 1522 aa18.26■□□□□ 0.51
SYNE3-201ENST00000334258 KIF14Q15058 1648 aa18.26■□□□□ 0.51
SYNE3-201ENST00000334258 KDM6BO15054 1643 aa18.25■□□□□ 0.51
SYNE3-201ENST00000334258 TROQ12816 1431 aaPredicted RBP18.25■□□□□ 0.51
SYNE3-201ENST00000334258 RPRD2Q5VT52 1461 aaKnown RBP18.25■□□□□ 0.51
SYNE3-201ENST00000334258 SPATA31E1Q6ZUB1 1445 aa18.25■□□□□ 0.51
SYNE3-201ENST00000334258 RRP1P56182 461 aaKnown RBP18.24■□□□□ 0.51
SYNE3-201ENST00000334258 DHX29Q7Z478 1369 aaKnown RBP18.24■□□□□ 0.51
SYNE3-201ENST00000334258 USP47Q96K76 1375 aa18.24■□□□□ 0.51
SYNE3-201ENST00000334258 RCAN3Q9UKA8 241 aa18.23■□□□□ 0.51
SYNE3-201ENST00000334258 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.23■□□□□ 0.51
SYNE3-201ENST00000334258 ABCC5O15440 1437 aa18.21■□□□□ 0.51
SYNE3-201ENST00000334258 PPM1GO15355 546 aaPredicted RBP18.2■□□□□ 0.5
SYNE3-201ENST00000334258 USP35Q9P2H5 1018 aa18.2■□□□□ 0.5
SYNE3-201ENST00000334258 GPATCH8Q9UKJ3 1502 aaKnown RBP18.2■□□□□ 0.5
SYNE3-201ENST00000334258 DAPK1P53355 1430 aa18.19■□□□□ 0.5
SYNE3-201ENST00000334258 TCOF1Q13428 1488 aaKnown RBP18.19■□□□□ 0.5
SYNE3-201ENST00000334258 TEX14Q8IWB6 1497 aa18.19■□□□□ 0.5
SYNE3-201ENST00000334258 TSPY4P0CV99 314 aa18.18■□□□□ 0.5
SYNE3-201ENST00000334258 TSPY10P0CW01 314 aa18.18■□□□□ 0.5
SYNE3-201ENST00000334258 CARD11Q9BXL7 1154 aa18.18■□□□□ 0.5
SYNE3-201ENST00000334258 BACH2Q9BYV9 841 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 147.7 ms