RNA–Protein interactions for RNA: ENST00000328560.12

ATP2C1-201, Transcript of ATPase secretory pathway Ca2+ transporting 1, humanhuman

TSL 1 (best) BASIC

Gene ATP2C1, Length 3,484 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATP2C1-201ENST00000328560 PBRM1Q86U86 1689 aa19.51■□□□□ 0.71
ATP2C1-201ENST00000328560 MIA2Q96PC5 1412 aa19.5■□□□□ 0.71
ATP2C1-201ENST00000328560 KIAA0586Q9BVV6 1533 aa19.5■□□□□ 0.71
ATP2C1-201ENST00000328560 CFDP1Q9UEE9 299 aaPredicted RBP19.49■□□□□ 0.71
ATP2C1-201ENST00000328560 DENND4BO75064 1496 aaPredicted RBP19.49■□□□□ 0.71
ATP2C1-201ENST00000328560 C11orf95C9JLR9 678 aaPredicted RBP19.48■□□□□ 0.71
ATP2C1-201ENST00000328560 NBPF8Q3BBV2 869 aa19.47■□□□□ 0.71
ATP2C1-201ENST00000328560 FAM9BQ8IZU0 186 aa19.47■□□□□ 0.71
ATP2C1-201ENST00000328560 WDR62O43379 1518 aa19.47■□□□□ 0.71
ATP2C1-201ENST00000328560 KDM5BQ9UGL1 1544 aa19.47■□□□□ 0.71
ATP2C1-201ENST00000328560 CCDC184Q52MB2 194 aa19.46■□□□□ 0.71
ATP2C1-201ENST00000328560 JPH4Q96JJ6 628 aa19.46■□□□□ 0.71
ATP2C1-201ENST00000328560 DAPK1P53355 1430 aa19.45■□□□□ 0.7
ATP2C1-201ENST00000328560 ABCC5O15440 1437 aa19.43■□□□□ 0.7
ATP2C1-201ENST00000328560 GRIN2AQ12879 1464 aa19.43■□□□□ 0.7
ATP2C1-201ENST00000328560 PRG4Q92954 1404 aaPredicted RBP19.43■□□□□ 0.7
ATP2C1-201ENST00000328560 CARMIL2Q6F5E8 1435 aa19.42■□□□□ 0.7
ATP2C1-201ENST00000328560 PLEKHD1A6NEE1 506 aa19.41■□□□□ 0.7
ATP2C1-201ENST00000328560 MRS2Q9HD23 443 aa19.41■□□□□ 0.7
ATP2C1-201ENST00000328560 AKNAQ7Z591 1439 aa19.41■□□□□ 0.7
ATP2C1-201ENST00000328560 NUP153P49790 1475 aaKnown RBP19.4■□□□□ 0.7
ATP2C1-201ENST00000328560 DISP1Q96F81 1524 aa19.4■□□□□ 0.7
ATP2C1-201ENST00000328560 ANKRD30BQ9BXX2 1392 aa19.4■□□□□ 0.7
ATP2C1-201ENST00000328560 GCC2Q8IWJ2 1684 aa19.38■□□□□ 0.69
ATP2C1-201ENST00000328560 CCDC7Q96M83 1385 aa19.37■□□□□ 0.69
ATP2C1-201ENST00000328560 PRKRIP1Q9H875 184 aaPredicted RBP19.36■□□□□ 0.69
ATP2C1-201ENST00000328560 PKD2Q13563 968 aa19.35■□□□□ 0.69
ATP2C1-201ENST00000328560 PLB1Q6P1J6 1458 aa19.35■□□□□ 0.69
ATP2C1-201ENST00000328560 ROCK1Q13464 1354 aa19.35■□□□□ 0.69
ATP2C1-201ENST00000328560 MAGI1Q96QZ7 1491 aaPredicted RBP19.35■□□□□ 0.69
ATP2C1-201ENST00000328560 CNTLNQ9NXG0 1405 aa19.35■□□□□ 0.69
ATP2C1-201ENST00000328560 KIAA0556O60303 1618 aa19.35■□□□□ 0.69
ATP2C1-201ENST00000328560 SENP3-EIF4A1A0A087X0R7 540 aa19.33■□□□□ 0.69
ATP2C1-201ENST00000328560 SYNJ2O15056 1496 aa19.33■□□□□ 0.69
ATP2C1-201ENST00000328560 KIF7Q2M1P5 1343 aa19.33■□□□□ 0.68
ATP2C1-201ENST00000328560 EIF4G3O43432 1585 aaKnown RBP19.33■□□□□ 0.68
ATP2C1-201ENST00000328560 RPRD2Q5VT52 1461 aaKnown RBP19.32■□□□□ 0.68
ATP2C1-201ENST00000328560 RBM19Q9Y4C8 960 aaKnown RBP19.31■□□□□ 0.68
ATP2C1-201ENST00000328560 TROQ12816 1431 aaPredicted RBP19.31■□□□□ 0.68
ATP2C1-201ENST00000328560 KDM2AQ9Y2K7 1162 aa19.3■□□□□ 0.68
ATP2C1-201ENST00000328560 RAPGEF6Q8TEU7 1601 aa19.29■□□□□ 0.68
ATP2C1-201ENST00000328560 TSPY4P0CV99 314 aa19.29■□□□□ 0.68
ATP2C1-201ENST00000328560 TSPY10P0CW01 314 aa19.29■□□□□ 0.68
ATP2C1-201ENST00000328560 NCOA1Q15788 1441 aa19.29■□□□□ 0.68
ATP2C1-201ENST00000328560 CAMSAP2Q08AD1 1489 aa19.27■□□□□ 0.68
ATP2C1-201ENST00000328560 DNMT1P26358 1616 aaKnown RBP19.27■□□□□ 0.67
ATP2C1-201ENST00000328560 TEX14Q8IWB6 1497 aa19.25■□□□□ 0.67
ATP2C1-201ENST00000328560 GPATCH8Q9UKJ3 1502 aaKnown RBP19.24■□□□□ 0.67
ATP2C1-201ENST00000328560 ANKRD30AQ9BXX3 1397 aa19.24■□□□□ 0.67
ATP2C1-201ENST00000328560 NUP155O75694 1391 aa19.23■□□□□ 0.67
ATP2C1-201ENST00000328560 HNRNPMP52272 730 aaKnown RBP eCLIP19.23■□□□□ 0.675e-7■■■■■ 28.1
ATP2C1-201ENST00000328560 PZPP20742 1482 aa19.22■□□□□ 0.67
ATP2C1-201ENST00000328560 ANP32EQ9BTT0 268 aa19.21■□□□□ 0.67
ATP2C1-201ENST00000328560 USP47Q96K76 1375 aa19.2■□□□□ 0.66
ATP2C1-201ENST00000328560 ANKRD50Q9ULJ7 1429 aa19.19■□□□□ 0.66
ATP2C1-201ENST00000328560 CARD11Q9BXL7 1154 aa19.19■□□□□ 0.66
ATP2C1-201ENST00000328560 KIAA1107Q9UPP5 1409 aa19.19■□□□□ 0.66
ATP2C1-201ENST00000328560 KIF14Q15058 1648 aa19.18■□□□□ 0.66
ATP2C1-201ENST00000328560 PTPRGP23470 1445 aa19.18■□□□□ 0.66
ATP2C1-201ENST00000328560 CEP170Q5SW79 1584 aa19.17■□□□□ 0.66
ATP2C1-201ENST00000328560 SPATA31E1Q6ZUB1 1445 aa19.17■□□□□ 0.66
ATP2C1-201ENST00000328560 B4GALNT3Q6L9W6 998 aa19.16■□□□□ 0.66
ATP2C1-201ENST00000328560 DCAF11Q8TEB1 546 aa19.16■□□□□ 0.66
ATP2C1-201ENST00000328560 NUP160Q12769 1436 aa19.15■□□□□ 0.66
ATP2C1-201ENST00000328560 ZBED9Q6R2W3 1325 aa19.14■□□□□ 0.65
ATP2C1-201ENST00000328560 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.14■□□□□ 0.65
ATP2C1-201ENST00000328560 PPP4R2Q9NY27 417 aa19.13■□□□□ 0.65
ATP2C1-201ENST00000328560 RGL3Q3MIN7 710 aa19.12■□□□□ 0.65
ATP2C1-201ENST00000328560 TMC1Q8TDI8 760 aa19.11■□□□□ 0.65
ATP2C1-201ENST00000328560 C9orf84Q5VXU9 1444 aa19.11■□□□□ 0.65
ATP2C1-201ENST00000328560 ST20-MTHFSA0A0A6YYL1 179 aa19.1■□□□□ 0.65
ATP2C1-201ENST00000328560 ATP10BO94823 1461 aa19.09■□□□□ 0.65
ATP2C1-201ENST00000328560 KIF15Q9NS87 1388 aa19.08■□□□□ 0.65
ATP2C1-201ENST00000328560 ITSN2Q9NZM3 1697 aa19.07■□□□□ 0.64
ATP2C1-201ENST00000328560 SALL2Q9Y467 1007 aaPredicted RBP19.05■□□□□ 0.64
ATP2C1-201ENST00000328560 ADGRL2O95490 1459 aa19.05■□□□□ 0.64
ATP2C1-201ENST00000328560 DHX29Q7Z478 1369 aaKnown RBP19.05■□□□□ 0.64
ATP2C1-201ENST00000328560 RSPH4AQ5TD94 716 aa19.02■□□□□ 0.63
ATP2C1-201ENST00000328560 ERICH6BQ5W0A0 696 aa19.01■□□□□ 0.63
ATP2C1-201ENST00000328560 ERICH6Q7L0X2 663 aa19.01■□□□□ 0.63
ATP2C1-201ENST00000328560 MBD5Q9P267 1494 aa19■□□□□ 0.63
ATP2C1-201ENST00000328560 ADGBQ8N7X0 1667 aa19■□□□□ 0.63
ATP2C1-201ENST00000328560 ROCK2O75116 1388 aaKnown RBP19■□□□□ 0.63
ATP2C1-201ENST00000328560 MSH5O43196 834 aa18.99■□□□□ 0.63
ATP2C1-201ENST00000328560 ABCC10Q5T3U5 1492 aa18.99■□□□□ 0.63
ATP2C1-201ENST00000328560 BCORL1Q5H9F3 1711 aa18.98■□□□□ 0.63
ATP2C1-201ENST00000328560 PNISRQ8TF01 805 aaKnown RBP18.97■□□□□ 0.63
ATP2C1-201ENST00000328560 NUDCQ9Y266 331 aa18.97■□□□□ 0.63
ATP2C1-201ENST00000328560 NBPF1Q3BBV0 1214 aa18.97■□□□□ 0.63
ATP2C1-201ENST00000328560 MYT1LQ9UL68 1186 aa18.96■□□□□ 0.63
ATP2C1-201ENST00000328560 ABCA8O94911 1581 aa18.95■□□□□ 0.62
ATP2C1-201ENST00000328560 ADCY10Q96PN6 1610 aa18.95■□□□□ 0.62
ATP2C1-201ENST00000328560 CDC42BPAQ5VT25 1732 aa18.94■□□□□ 0.62
ATP2C1-201ENST00000328560 ARID4BQ4LE39 1312 aaPredicted RBP18.94■□□□□ 0.62
ATP2C1-201ENST00000328560 CCDC136Q96JN2 1154 aa18.94■□□□□ 0.62
ATP2C1-201ENST00000328560 RALGAPBQ86X10 1494 aa18.93■□□□□ 0.62
ATP2C1-201ENST00000328560 CROCC2H7BZ55 1655 aa18.93■□□□□ 0.62
ATP2C1-201ENST00000328560 CCDC144AA2RUR9 1427 aa18.92■□□□□ 0.62
ATP2C1-201ENST00000328560 KDM5CP41229 1560 aa18.91■□□□□ 0.62
ATP2C1-201ENST00000328560 UHRF1BP1Q6BDS2 1440 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms