RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 MAGI3Q5TCQ9 1506 aa17.53■□□□□ 0.4
HMGCS1-201ENST00000325110 CNTLNQ9NXG0 1405 aa17.53■□□□□ 0.4
HMGCS1-201ENST00000325110 CARD11Q9BXL7 1154 aa17.51■□□□□ 0.39
HMGCS1-201ENST00000325110 UGGT2Q9NYU1 1516 aa17.5■□□□□ 0.39
HMGCS1-201ENST00000325110 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.5■□□□□ 0.396e-9■■■■■ 33.2
HMGCS1-201ENST00000325110 RGL3Q3MIN7 710 aa17.5■□□□□ 0.39
HMGCS1-201ENST00000325110 LAMC3Q9Y6N6 1575 aa17.5■□□□□ 0.39
HMGCS1-201ENST00000325110 CCDC136Q96JN2 1154 aa17.49■□□□□ 0.39
HMGCS1-201ENST00000325110 TSPY4P0CV99 314 aa17.48■□□□□ 0.39
HMGCS1-201ENST00000325110 TSPY10P0CW01 314 aa17.48■□□□□ 0.39
HMGCS1-201ENST00000325110 THOC2Q8NI27 1593 aaKnown RBP17.47■□□□□ 0.39
HMGCS1-201ENST00000325110 PLEKHD1A6NEE1 506 aa17.47■□□□□ 0.39
HMGCS1-201ENST00000325110 HECW1Q76N89 1606 aa17.46■□□□□ 0.39
HMGCS1-201ENST00000325110 DCAF11Q8TEB1 546 aa17.46■□□□□ 0.38
HMGCS1-201ENST00000325110 KDM6BO15054 1643 aa17.45■□□□□ 0.38
HMGCS1-201ENST00000325110 IQGAP2Q13576 1575 aa17.45■□□□□ 0.38
HMGCS1-201ENST00000325110 SAMD9Q5K651 1589 aa17.45■□□□□ 0.38
HMGCS1-201ENST00000325110 DAPK1P53355 1430 aa17.45■□□□□ 0.38
HMGCS1-201ENST00000325110 PRG4Q92954 1404 aaPredicted RBP17.44■□□□□ 0.38
HMGCS1-201ENST00000325110 ANKRD30BQ9BXX2 1392 aa17.44■□□□□ 0.38
HMGCS1-201ENST00000325110 MSH5O43196 834 aa17.43■□□□□ 0.38
HMGCS1-201ENST00000325110 MIA2Q96PC5 1412 aa17.43■□□□□ 0.38
HMGCS1-201ENST00000325110 NUP155O75694 1391 aa17.43■□□□□ 0.38
HMGCS1-201ENST00000325110 ABCA5Q8WWZ7 1642 aa17.43■□□□□ 0.38
HMGCS1-201ENST00000325110 ZBED9Q6R2W3 1325 aa17.42■□□□□ 0.38
HMGCS1-201ENST00000325110 USP47Q96K76 1375 aa17.42■□□□□ 0.38
HMGCS1-201ENST00000325110 ZNF608Q9ULD9 1512 aaPredicted RBP17.42■□□□□ 0.38
HMGCS1-201ENST00000325110 ABCC5O15440 1437 aa17.41■□□□□ 0.38
HMGCS1-201ENST00000325110 NBR1Q14596 966 aa17.41■□□□□ 0.38
HMGCS1-201ENST00000325110 HNRNPMP52272 730 aaKnown RBP eCLIP17.4■□□□□ 0.386e-8■■■■■ 30.3
HMGCS1-201ENST00000325110 NPM2Q86SE8 214 aaKnown RBP17.39■□□□□ 0.38
HMGCS1-201ENST00000325110 LRRIQ1Q96JM4 1722 aa17.39■□□□□ 0.37
HMGCS1-201ENST00000325110 NCOA1Q15788 1441 aa17.39■□□□□ 0.37
HMGCS1-201ENST00000325110 ST20-MTHFSA0A0A6YYL1 179 aa17.38■□□□□ 0.37
HMGCS1-201ENST00000325110 JPH4Q96JJ6 628 aa17.38■□□□□ 0.37
HMGCS1-201ENST00000325110 DENND4BO75064 1496 aaPredicted RBP17.37■□□□□ 0.37
HMGCS1-201ENST00000325110 KIF21AQ7Z4S6 1674 aa17.36■□□□□ 0.37
HMGCS1-201ENST00000325110 ANKRD30AQ9BXX3 1397 aa17.36■□□□□ 0.37
HMGCS1-201ENST00000325110 AKNAQ7Z591 1439 aa17.36■□□□□ 0.37
HMGCS1-201ENST00000325110 TCOF1Q13428 1488 aaKnown RBP17.36■□□□□ 0.37
HMGCS1-201ENST00000325110 ERCC6Q03468 1493 aa17.35■□□□□ 0.37
HMGCS1-201ENST00000325110 RPRD2Q5VT52 1461 aaKnown RBP17.35■□□□□ 0.37
HMGCS1-201ENST00000325110 KDM5BQ9UGL1 1544 aa17.35■□□□□ 0.37
HMGCS1-201ENST00000325110 MYT1LQ9UL68 1186 aa17.34■□□□□ 0.37
HMGCS1-201ENST00000325110 NUDCQ9Y266 331 aa17.33■□□□□ 0.37
HMGCS1-201ENST00000325110 PLB1Q6P1J6 1458 aa17.33■□□□□ 0.36
HMGCS1-201ENST00000325110 BCL11AQ9H165 835 aa17.32■□□□□ 0.36
HMGCS1-201ENST00000325110 CC2D1BQ5T0F9 858 aaKnown RBP17.32■□□□□ 0.36
HMGCS1-201ENST00000325110 ERICH6BQ5W0A0 696 aa17.31■□□□□ 0.36
HMGCS1-201ENST00000325110 MRC2Q9UBG0 1479 aa17.31■□□□□ 0.36
HMGCS1-201ENST00000325110 WDR62O43379 1518 aa17.3■□□□□ 0.36
HMGCS1-201ENST00000325110 ROCK1Q13464 1354 aa17.3■□□□□ 0.36
HMGCS1-201ENST00000325110 ANP32AP39687 249 aaKnown RBP17.3■□□□□ 0.36
HMGCS1-201ENST00000325110 ANKRD50Q9ULJ7 1429 aa17.3■□□□□ 0.36
HMGCS1-201ENST00000325110 NUP153P49790 1475 aaKnown RBP17.3■□□□□ 0.36
HMGCS1-201ENST00000325110 FANCIQ9NVI1 1328 aa17.28■□□□□ 0.36
HMGCS1-201ENST00000325110 ARHGEF11O15085 1522 aa17.28■□□□□ 0.36
HMGCS1-201ENST00000325110 TROQ12816 1431 aaPredicted RBP17.28■□□□□ 0.36
HMGCS1-201ENST00000325110 KIAA0586Q9BVV6 1533 aa17.28■□□□□ 0.36
HMGCS1-201ENST00000325110 ROCK2O75116 1388 aaKnown RBP17.27■□□□□ 0.36
HMGCS1-201ENST00000325110 TARBP1Q13395 1621 aaKnown RBP17.27■□□□□ 0.35
HMGCS1-201ENST00000325110 CARMIL2Q6F5E8 1435 aa17.27■□□□□ 0.35
HMGCS1-201ENST00000325110 KIAA1107Q9UPP5 1409 aa17.27■□□□□ 0.35
HMGCS1-201ENST00000325110 CAMSAP2Q08AD1 1489 aa17.27■□□□□ 0.35
HMGCS1-201ENST00000325110 ADAMTS12P58397 1594 aa17.26■□□□□ 0.35
HMGCS1-201ENST00000325110 GCC2Q8IWJ2 1684 aa17.25■□□□□ 0.35
HMGCS1-201ENST00000325110 TEX14Q8IWB6 1497 aa17.25■□□□□ 0.35
HMGCS1-201ENST00000325110 NOP58Q9Y2X3 529 aaKnown RBP17.23■□□□□ 0.35
HMGCS1-201ENST00000325110 PNISRQ8TF01 805 aaKnown RBP17.22■□□□□ 0.35
HMGCS1-201ENST00000325110 RTL5Q5HYW3 569 aaPredicted RBP17.22■□□□□ 0.35
HMGCS1-201ENST00000325110 PBRM1Q86U86 1689 aa17.22■□□□□ 0.35
HMGCS1-201ENST00000325110 DISP1Q96F81 1524 aa17.22■□□□□ 0.35
HMGCS1-201ENST00000325110 IFT140Q96RY7 1462 aa17.21■□□□□ 0.35
HMGCS1-201ENST00000325110 GRIN2AQ12879 1464 aa17.21■□□□□ 0.35
HMGCS1-201ENST00000325110 KIF15Q9NS87 1388 aa17.21■□□□□ 0.35
HMGCS1-201ENST00000325110 NBPF1Q3BBV0 1214 aa17.21■□□□□ 0.34
HMGCS1-201ENST00000325110 PZPP20742 1482 aa17.2■□□□□ 0.34
HMGCS1-201ENST00000325110 ZBTB47Q9UFB7 747 aaPredicted RBP17.2■□□□□ 0.34
HMGCS1-201ENST00000325110 GPATCH8Q9UKJ3 1502 aaKnown RBP17.19■□□□□ 0.34
HMGCS1-201ENST00000325110 EXOC6Q8TAG9 804 aa17.19■□□□□ 0.34
HMGCS1-201ENST00000325110 KIAA0556O60303 1618 aa17.18■□□□□ 0.34
HMGCS1-201ENST00000325110 C9orf84Q5VXU9 1444 aa17.17■□□□□ 0.34
HMGCS1-201ENST00000325110 SPATA31E1Q6ZUB1 1445 aa17.17■□□□□ 0.34
HMGCS1-201ENST00000325110 PLIN1O60240 522 aa17.17■□□□□ 0.34
HMGCS1-201ENST00000325110 MYBBP1AQ9BQG0 1328 aaKnown RBP17.17■□□□□ 0.34
HMGCS1-201ENST00000325110 PAK3O75914 559 aaPredicted RBP17.17■□□□□ 0.34
HMGCS1-201ENST00000325110 RCAN3Q9UKA8 241 aa17.17■□□□□ 0.34
HMGCS1-201ENST00000325110 DHX29Q7Z478 1369 aaKnown RBP17.17■□□□□ 0.34
HMGCS1-201ENST00000325110 RAPGEF6Q8TEU7 1601 aa17.16■□□□□ 0.34
HMGCS1-201ENST00000325110 DNMT1P26358 1616 aaKnown RBP17.16■□□□□ 0.34
HMGCS1-201ENST00000325110 KTN1Q86UP2 1357 aaKnown RBP17.15■□□□□ 0.34
HMGCS1-201ENST00000325110 RALBP1Q15311 655 aa17.15■□□□□ 0.34
HMGCS1-201ENST00000325110 CDCA7LQ96GN5 454 aa17.15■□□□□ 0.34
HMGCS1-201ENST00000325110 SMG6Q86US8 1419 aaKnown RBP17.14■□□□□ 0.33
HMGCS1-201ENST00000325110 NLRP13Q86W25 1043 aa17.14■□□□□ 0.33
HMGCS1-201ENST00000325110 DEKP35659 375 aaKnown RBP17.12■□□□□ 0.33
HMGCS1-201ENST00000325110 CCDC144AA2RUR9 1427 aa17.12■□□□□ 0.33
HMGCS1-201ENST00000325110 RRP1P56182 461 aaKnown RBP17.12■□□□□ 0.33
HMGCS1-201ENST00000325110 PANK3Q9H999 370 aa17.12■□□□□ 0.33
HMGCS1-201ENST00000325110 KIF14Q15058 1648 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms